For focused group profiling of human cancer drug resistance & metabolism related gene expression

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1 GeneCopoeia TM Expressway to Discovery Product Data Sheet ExProfile TM Human Cancer Drug Resistance & Metabolism Related Gene qpcr Array For focused group profiling of human cancer drug resistance & metabolism related gene expression Cat. No. QG007-A (1 x 96-well plate, Format A) Cat. No. QG007-B (1 x 96-well plate, Format B) Cat. No. QG007-C (1 x 96-well plate, Format C) Cat. No. QG007-D (1 x 96-well plate, Format D) Cat. No. QG007-E (1 x 96-well plate, Format E) Plates available individually or as a set of 6. Each set contains 84 unique gene primer pairs deposited in one 96-well plate. Introduction The ExProfile human cancer drug resistance & metabolism related gene qpcr array profiles the expression of 84 human genes related to the response to chemotherapy. These genes are carefully chosen for their close pathway correlation based on a thorough literature search of peer-reviewed publications, and include genes that encode important enzymes for drug resistance, phase I metabolism and phase II metabolism, as well as cancer-related genes involved in aspects of resistance. This array allows researchers to study pathway-related genes to gain understanding of their roles in cancer drug resistance and metabolism. QG007 plate 01: 84 unique gene PCR primer pairs Shipping and storage conditions Shipped at room temperature Stable for at least 6 months when stored at -20 C Array format GeneCopoeia provides five qpcr array formats (A, B, C, D, and E) suitable for use with the following realtime cyclers. Important note: Upon receipt, please check to make sure that the correct array format was ordered to ensure compatibility with your qpcr instrument. Plate format Instrument provider qpcr instrument model A B C D E Applied Biosystems Applied Biosystems Bio-Rad Laboratories Bio-Rad Laboratories Roche Applied Science 5700, 7000, 7300, 7500, 7700, 7900HT (Standard 96-well block), ViiA TM 7 (Standard 96-well block) 7500 (Fast block), 7900HT (Fast block), StepOnePlus TM, ViiA TM 7(Fastblock) icycler iq,myiq,iq 5 CFX96, DNA Engine Opticon, DNA Engine Opticon 2, Chromo4 LightCycler 480 (96-well block) 1

2 Quality control 1. Each pair of primers in the ExProfile gene qpcr array has been experimentally validated to yield a single dissociation curve peak and to generate a single amplicon of the correct size for the targeted gene. 2. The positive PCR controls (PCR) have been verified to amplify a single amplicon of the correct size with Ct values around 20±2. 3. The Spike-in reverse transcription controls (RT) have been verified to amplify a single amplicon of the correct size with Ct values around 20±3. 4. R 2 > 0.99 was observed for high inter/ intra-array reproducibility. Materials required but not provided All-in-One TM First-Strand cdna Synthesis Kit All-in-One TM qpcr Mix Total RNA extraction kit (RNAzol RT RNA extraction reagent is recommended) DNase/RNase free tips, PCR reaction tubes, 1.5 ml microcentrifuge tubes 5 ml and 10 ml graduated pipettes, beakers, flasks, and cylinders 10 μl to1,000μl adjustable single channel micropipettes with disposable tips 5 μl to20μl adjustable multichannel micropipette, disposable tips, and reservoir qpcr instrument, compatible with gene qpcr arrays ordered Array layout Figure1. Illustration of QG007 plate 01 Gene primer pairs: 84 wells (A row to G row) are designated for a real-time PCR assay for genes (see the primer list). HK1-6: Six pre-deposited housekeeping gene (HK1-6) primer pairs, which can be used as endogenous positive controls as well as for array normalization. GDC: Genomic DNA controls, which can be used to specifically detect genomic DNA contamination with a high level of sensitivity. RT: Spike-in reverse transcription controls, which can be used to monitor the efficiency of the RT reactions. These pre-deposited primer pairs specifically amplify the cdna template reverse transcribed from the spike-in control RNA in the sample. PCR: Positive PCR controls, which are used to verify the PCR efficiency by amplifying the predeposited DNA template with its specific pre-deposited primer pairs. 2

3 Gene primer list Plate Position Catalog No. of Primer Accession No. of Gene Symbol QG A01 HQP NM_ ABCB1 QG A02 HQP NM_ ABCC1 QG A03 HQP NM_ ABCC2 QG A04 HQP NM_ ABCC3 QG A05 HQP NM_ ABCC5 QG A06 HQP NM_ ABCC6 QG A07 HQP NM_ ABCG2 QG A08 HQP NM_ AHR QG A09 HQP NM_ AP1S1 QG A10 HQP NM_ APC QG A11 HQP NM_ AR QG A12 HQP NM_ ARNT QG B01 HQP NM_ ATM QG B02 HQP NM_ BAX QG B03 HQP NM_ BCL2 QG B04 HQP NM_ BCL2L1 QG B05 HQP NM_ BLMH QG B06 HQP NM_ BRCA1 QG B07 HQP NM_ BRCA2 QG B08 HQP NM_ CCND1 QG B09 HQP NM_ CCNE1 QG B10 HQP NM_ CDK2 QG B11 HQP NM_ CDK4 QG B12 HQP NM_ CDKN1A QG C01 HQP NM_ CDKN1B QG C02 HQP NM_ CDKN2A QG C03 HQP NM_ CDKN2D QG C04 HQP NM_ CLPTM1L QG C05 HQP NM_ CYP1A1 QG C06 HQP NM_ CYP1A2 QG C07 HQP NM_ CYP2B6 QG C08 HQP NM_ CYP2C19 QG C09 HQP NM_ CYP2C8 QG C10 HQP NM_ CYP2C9 QG C11 HQP NM_ CYP2D6 QG C12 HQP NM_ CYP2E1 QG D01 HQP NM_ CYP3A4 QG D02 HQP NM_ CYP3A5 QG D03 HQP NM_ DHFR QG D04 HQP NM_ EGFR QG D05 HQP NM_ ELK1 3

4 4 Product Data Sheet QG D06 HQP NM_ EPHX1 QG D07 HQP NM_ ERBB2 QG D08 HQP NM_ ERBB3 QG D09 HQP NM_ ERCC3 QG D10 HQP NM_ ESR1 QG D11 HQP NM_ ESR2 QG D12 HQP NM_ FGF2 QG E01 HQP NM_ FOS QG E02 HQP NM_ GSK3A QG E03 HQP NM_ GSTP1 QG E04 HQP NM_ HIF1A QG E05 HQP NM_ IGF1R QG E06 HQP NM_ IGF2R QG E07 HQP NM_ MET QG E08 HQP NM_ MSH2 QG E09 HQP NM_ MVP QG E10 HQP NM_ MYC QG E11 HQP NM_ NAT2 QG E12 HQP NM_ NFKB1 QG F01 HQP NM_ NFKB2 QG F02 HQP NM_ NFKBIB QG F03 HQP NM_ NFKBIE QG F04 HQP NM_ PPARA QG F05 HQP NM_ PPARD QG F06 HQP NM_ PPARG QG F07 HQP NM_ RARA QG F08 HQP NM_ RARB QG F09 HQP NM_ RARG QG F10 HQP NM_ RB1 QG F11 HQP NM_ RELB QG F12 HQP NM_ RXRA QG G01 HQP NM_ RXRB QG G02 HQP NM_ SOD1 QG G03 HQP NM_ SULT1E1 QG G04 HQP NM_ TNFRSF11A QG G05 HQP NM_ TOP1 QG G06 HQP NM_ TOP2A QG G07 HQP NM_ TOP2B QG G08 HQP NM_ TP53 QG G09 HQP NM_ XPC QG G10 HQP NM_ AR QG G11 HQP NM_ HPRT1 QG G12 HQP NM_ ABCC5 QG H01 HGDC QG H02 HGDC QG H03 HQP NM_ GAPDH QG H04 HQP NM_ ACTB

5 QG H05 HQP NM_ B2M QG H06 HQP NM_ RPL13A QG H07 HQP NM_ HPRT1 QG H08 HQP NR_ RN18S1 QG H09 RT QG H10 RT QG H11 PCR QG H12 PCR 5

6 Limited Use License Following terms and conditions apply to use of ExProfile TM Human Cancer Drug Resistance & Metabolism Related Gene qpcr Array (the Product). If the terms and conditions are not acceptable, the Product in its entirety must be returned to GeneCopoeia within 5 calendar days. A limited End-User license is granted to the purchaser of the Product. The Product shall be used by the purchaser for internal research purposes only. The Product is expressly not designed, intended, or warranted for use in humans or for therapeutic or diagnostic use. The Product must not be resold, repackaged or modified for resale, or used to manufacture commercial products or deliver information obtained in service without prior written consent from GeneCopoeia. This Product should be used in accordance with the NIH guidelines developed for recombinant DNA and genetic research. Use of any part of the Product constitutes acceptance of the above terms. Limited Warranty GeneCopoeia warrants that the Product meets the specifications described in the accompanying Product Datasheet. If it is proven to the satisfaction of GeneCopoeia that the Product fails to meet these specifications, GeneCopoeia will replace the Product. In the event a replacement cannot be provided, GeneCopoeia will provide the purchaser with a refund. This limited warranty shall not extend to anyone other than the original purchaser of the Product. Notice of nonconforming products must be made to GeneCopoeia within 30 days of receipt of the Product. GeneCopoeia s liability is expressly limited to replacement of Product or a refund limited to the actual purchase price. GeneCopoeia s liability does not extend to any damages arising from use or improper use of the Product, or losses associated with the use of additional materials or reagents. This limited warranty is the sole and exclusive warranty. GeneCopoeia does not provide any other warranties of any kind, expressed or implied, including the merchantability or fitness of the Product for a particular purpose. GeneCopoeia is committed to providing our customers with high-quality products. If you should have any questions or concerns about any GeneCopoeia products, please contact us at GeneCopoeia, Inc. GeneCopoeia, Inc Medical Center Drive, Suite 101 Rockville, MD (301) (866) inquiry@genecopoeia.com GeneCopoeia Products are for Research Use Only Copyright 2016 GeneCopoeia, Inc. Trademarks: GeneCopoeia, ExProfile, All-in-One, (GeneCopoeia Inc.); RNAzol RT (Molecular Research Center, Inc.); SYBR (Molecular Probes); icycler iq, MyiQ, iq 5, CFX96, DNA Engine Opticon, DNA Engine Opticon 2, Chromo4 (Bio-Rad); LightCycler (Roche);Trizol, ABI,ROX,ViiA TM,StepOnePlus TM (Life Technologies). QG