Product selection guide Ion S5 and Ion S5 XL Systems

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1 Product selection guide Ion S5 and s Cancer genomics research Molecular profiling Ion AmpliSeq Ready-to-Use Panels Ion AmpliSeq Comprehensive Cancer Panel Cat. No Ion AmpliSeq Made-to-Order Panels (Customize your own or browse predesigned panels at ampliseq.com) Ion AmpliSeq On-Demand Panels (Order at ampliseq.com, for germline analysis only) Ion AmpliSeq Library Kit Plus Ion AmpliSeq Library Kit 2.0 (96 LV format) Ion AmpliSeq Cancer Hotspot Panel v2 Chef-Ready Kit Cat. No. A32914 (Ion AmpliSeq Chef DL8 Reagents included) Ion Torrent Oncomine Comprehensive Library Assay* Cat. No. A29226 (Ion AmpliSeq Library Kit 2.0 included) Ion Xpress Barcode Adapters 1-96 Kit (Must use Ion AmpliSeq Library Kit Plus for Ion AmpliSeq On-Demand Panels) Ion Library Equalizer Kit Cat No Ion Torrent Oncomine Focus Assay* Cat. No. A29230 (Ion AmpliSeq Library Kit 2.0 included with the assay) Ion Torrent Oncomine BRCA Research Assay, Chef Ready* Cat. No. A32841 ( included) Ion Torrent Oncomine BRCA Research Assay, Manual* Cat. No. A32840 (Ion AmpliSeq Library Kit Plus included) Ion AmpliSeq Sample ID Panel Cat. No Ion Chef Instrument Ion 510 /Ion 520 /Ion 530 Kit-Chef Ion 540 Kit-Chef Ion OneTouch 2 System Ion 520 /Ion 530 Kit-OT2 Ion 540 Kit-OT2 Ion S5 System Ion S5 XL System Ion 510 Chip Kit Ion 520 Chip Kit Ion 530 Chip Kit Ion 540 Chip Kit Ion S5 Controls Kit Plus Ion S5 Calibration Standard Torrent Suite Software Ion Reporter Software (cloud or server) Ion Torrent Oncomine Lung cfdna Assay* Cat. No. A31149 (Includes library construction reagents) Liquid biopsy Ion Torrent Oncomine Breast cfdna Assay* Cat. No. A31183 (Includes library construction reagents) Ion Torrent Oncomine Colon cfdna Assay* Cat. No. A31182 (Includes library construction reagents) Immuno-oncology Ion Torrent Oncomine Immune Response Research Assay, Automated* Cat. No. A32928 ( included) Ion Torrent Oncomine Immune Response Research Assay* Cat. No. A32881 (Ion AmpliSeq Library Kit 2.0 included) * To learn more about Oncomine assays, go to thermofisher.com/oncomine-assays, then contact a member of the clinical research team to order. All Chef-Ready kits include library equalization reagents and barcodes.

2 Product selection guide Ion S5 and s Gene expression analysis Targeted RNA sequencing Whole-transcriptome RNA sequencing mrna sequencing Small-RNA analysis Ion AmpliSeq RNA Fusion Lung Cancer Research Panel Ion AmpliSeq Custom RNA Panels Ion AmpliSeq Library Kit Plus Ion Xpress Barcode Adapters 1-16 Kit Cat. No Ion AmpliSeq Transcriptome Human Gene Expression Kit Cat. No. A26325 (24 rxns), Cat. No. A26326 (96 rxns), Cat. No. A26327 (384 rxns) Ion AmpliSeq Transcriptome Human Gene Expression Panel, Chef-Ready Kit Cat. No. A31446 (32 rxns) rrna depletion: Invitrogen RiboMinus Eukaryote System v2 Cat. No. A15026 Invitrogen Low Input RiboMinus Eukaryote System v2 Cat. No. A15027 Sample controls: Invitrogen ERCC RNA Spike-In Mix Cat. No mrna isolation: Invitrogen Dynabeads mrna DIRECT Micro Kit Cat. No Sample controls: ERCC RNA Spike-In Mix Cat. No Invitrogen mirvana mirna Isolation Kit Cat. No. AM1560 Ion Total RNA-Seq Kit v2 Cat. No (12 rxns) and Cat. No (48 rxns) Or for less hands-on time: Ion Total RNA-Seq Kit for AB Library Builder System Cat. No Ion Total RNA Library Protocol Card for AB Library Builder System Cat. No Ion Xpress RNA-Seq Barcode 1-16 Kit Cat. No Check quality and quantity of RNA: Invitrogen Qubit 3 Fluorometer Cat. No. Q33216 Invitrogen Qubit RNA HS Assay Kit Cat. No. Q32852 Ion 520/Ion 530 Kit-OT2 Coverage Analysis Plugin Ion AmpliSeq RNA Plugin Third-party software (e.g., Partek software) Coverage Analysis Plugin Ion RNASeq Analysis Plugin Third-party software (e.g., Partek software) Ion AmpliSeq SmallRNA Analysis

3 Product selection guide Ion S5 and s Inherited disease research Variant detection with targeted sequencing Variant detection with exome sequencing Ion AmpliSeq On-Demand Panels Ion AmpliSeq Made-to-Order Panels (Customize your own or browse predesigned panels at ampliseq.com) Ion AmpliSeq Exome RDY Kit 1x8 Cat. No. A29854 Ion AmpliSeq Exome RDY Kit 4x2 Cat. No. A29855 Ion AmpliSeq Library Kit Plus (Must use Ion AmpliSeq Library Kit Plus for Ion AmpliSeq On-Demand Panels) Ion Library Equalizer Kit Cat No Ion AmpliSeq Sample ID Panel Cat. No Ion AmpliSeq library kits included in Ion AmpliSeq exome kits Check quality and quantity of dsdna: Invitrogen Qubit 3 NGS Starter Kit Cat. No. Q33218 (Includes Invitrogen Qubit 3 Fluorometer, Qubit dsdna HS Assay Kit, and Qubit assay tubes) Ion Xpress Barcode Adapters 1-16 Kit Cat. No Ion 520/Ion 530 Kit-OT2 Reproductive health research Preimplantation genetic screening (PGS) Ion SingleSeq Kit, included with any of the following: Ion ReproSeq PGS Kit with Ion 510 Chips Cat No. A Ion ReproSeq PGS Kit with Ion 520 Chips Ion ReproSeq PGS Kit with Ion 530 Chips Ion ReproSeq PGS Kit with Ion 510 Chips Cat. No. A Ion ReproSeq PGS Kit with Ion 520 Chips Ion ReproSeq PGS Kit with Ion 530 Chips Ion ReproSeq PGS Kit with Ion 510 Chips Cat No. A Ion ReproSeq PGS Kit with Ion 520 Chips Ion ReproSeq PGS Kit with Ion 530 Chips Ion Reporter Software aneuploidy workflow

4 Product selection guide Ion S5 and s Infectious disease research Discovery and characterization Targeted sequencing Ion AmpliSeq Made-to-Order Panels (Customize your own panel for any genome, or select from the following predesigned panels at ampliseq.com) Ion AmpliSeq TB Research Panel Ion AmpliSeq Ebola Research Panel Ion Xpress Plus Fragment Library Kit Cat. No Thermo Scientific MuSeek Library Preparation Kit, Ion Torrent system compatible Ion Total RNA-Seq Kit v2 Cat. No Ion Library Equalizer Kit Cat.No Automated library preparation: Ion AmpliSeq Transcriptome Human Gene Expression Kit Cat. No. A26325 (24 rxns), Cat. No. A26326 (96 rxns), Cat. No. A26327 (384 rxns) Ion AmpliSeq Transcriptome Human Gene Expression Panel, Chef-Ready Kit Cat. No. A31446 (32 rxns) Cat. Nos. A34019 and A3446 For 600 bp (longer-read) sequencing: Ion 520 & Ion 530 ExT Kit-Chef Cat No. A30670 (Template preparation and sequencing reagents for 400- to 600-base read libraries) Ion 520/530 Kit-OT2 Ion S5 ExT Calibration Standard Cat. No. A30738 Ion Torrent E. coli Control 600 Library Cat. No. A32470 Assembler SPAdes v3.1 Plugin Metagenomics Ion 16S Metagenomics Kit Cat. No. A26216 Ion 16S Metagenomics Kit Cat. No. A26216 Ion Xpress Plus Fragment Library Kit Cat. No (For microbial community characterization by 16S rdna sequencing) MuSeek Library Preparation Kit, Ion Torrent system compatible Ion Library TaqMan Quantitation Kit Cat. No OPTONAL or other Ion Xpress Barcode Adapters Kits Ion 16S Metagenomics workflow

5 Infectious disease research (continued) Plant and animal genomics research Bacterial and viral typing research Variant detection Design custom panels for any reference genome using the Ion AmpliSeq Designer at ampliseq.com; upload a custom reference or use one of the preloaded reference genomes: mouse, chicken, cow, pig, sheep, Chinese hamster, dog, maize, rice, soybean, or tomato MuSeek Library Preparation Kit, Ion Torrent system compatible Ion Xpress Plus Fragment Library Kit Cat. No (or other kits for library preparation from genomic DNA) Ion Library TaqMan Quantitation Kit Cat. No other Ion Xpress Barcode Adapters Kits Ion AmpliSeq LIbrary Kit 2.0 (96 LV format) Ion Library Equilizer Kit Cat. No Automated library preparation: Cat. Nos. A34019 and A3446 For 600 bp (longer-read) sequencing: Ion 520 & Ion 530 ExT Kit-Chef Cat No. A30670 (Template preparation and sequencing reagents for 400- to 600-base read libraries) Ion 520/530 Kit-OT2 Ion S5 ExT Calibration Standard Cat. No. A30738 E. coli Control 600 Library Cat. No. A32470 Pathogen Detector Plugin Applied Biosystems ABL ViroScore-HIV application subscription For Research Use Only. Not for use in diagnostic procedures Thermo Fisher Scientific Inc. All rights reserved. All trademarks are the property of Thermo Fisher Scientific and its subsidiaries unless otherwise specified. TaqMan is a registered trademark of Roche Molecular Systems, Inc., used under permission and license. Partek is a trademark of Partek Incorporated. COL