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Herbert Garrett
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2 Introduction to Genetics GENETICS branch of biology that deals with heredity and variation of organisms. Chromosomes carry the hereditary information (genes) Arrangement of nucleotides in DNA DNA RNA Proteins

3 Chromosomes (and genes) occur in pairs Homologous Chromosomes New combinations of genes occur in sexual reproduction Fertilization from two parents

4 History Before mendel, applied genetics did occur (selective breeding) 1822 Mendel s birth Limited information about breeding Breeders could produce some desired traits But couldn t predict why the traits would disappear in certain generations No model to explain it.

Gregor Johann Mendel Austrian Monk, born in what is now Czech Republic in 1822 Son of peasant farmer, studied Theology and was ordained priest Loved teaching

5 Gregor Johann Mendel Austrian Monk, born in what is now Czech Republic in 1822 Son of peasant farmer, studied Theology and was ordained priest Loved teaching at a secondary school, but failed teaching certification exam twice! Went to the university of Vienna, where he studied botany and learned the Scientific Method

6 Mendel s life Returned to Brno (Czech Rep.), where he started experiments to produce different types of peas. Worked with pure lines of peas for eight years Prior to Mendel, heredity was regarded as a "blending" process and the offspring were essentially a "dilution"of the different parental characteristics.

7 Mendel s peas Mendel looked at seven traits or characteristics of pea plants:

In 1866 he published Experiments in Plant Hybridization, in which he established the two principles of inheritance Attempts to repeat his work

8 In 1866 he published Experiments in Plant Hybridization, in which he established the two principles of inheritance Attempts to repeat his work failed because the plant reproduced asexually! Work was largely ignored for 34 years, until 1900, when 3 independent botanists rediscovered Mendel s work.

10 Mendel was the first biologist to use Mathematics to explain his results quantitatively. Mendel predicted The concept of genes That genes occur in pairs That one gene of each pair is present in the gametes

11 Terminology you need to know: Gene a unit of heredity; a section of DNA sequence encoding a single protein. Alleles two genes that occupy the same position on homologous chromosomes and that cover the same trait (like flavors of a trait). Locus a fixed location on a strand of DNA where a gene or one of its alleles is located.

12 Homozygous having identical genes (one from each parent) for a particular characteristic. Heterozygous having two different genes for a particular characteristic Dominant the allele of a gene that masks or suppresses the expression of an alternate allele; the trait appears in the heterozygous condition. Recessive an allele that is masked by a dominant allele; does not appear in the heterozygous condition, only in homozygous.

Phenotype the physical appearance of an organism.

that contains HALF of the genetic information necessary for expression of

(one trait); parents differ by a single trait.

13 Phenotype the physical appearance of an organism. Genotype the genetic makeup of an organisms Gamete a specialized sex cell that contains HALF of the genetic information necessary for expression of a trait Monohybrid cross: a genetic cross involving a single pair of genes (one trait); parents differ by a single trait. P = Parental F 1 = First filial generation; offspring from a genetic cross. F 2 = Second filial generation of a genetic cross

14 Zygote special cell that forms from the fusion of two gametes

15 Monohybrid cross a method of finding out the inheritance pattern of a trait between two single organisms. Parents differ by a single trait. Crossing two pea plants that differ in stem size, one tall one short T = allele for Tall t = allele for dwarf TT = homozygous tall plant t t = homozygous dwarf plant T T t t

16 Monohybrid cross for stem length: P = parentals true breeding, homozygous plants: T T t t (tall) (dwarf) F 1 generation is heterozygous: T t (all tall plants)

17 Punnett square A useful tool to do genetic crosses For a monohybrid cross, you need a square divided by four. Looks like a window pane We use the Punnett square to predict the genotypes and phenotypes of the offspring.

18 Using a Punnett Square STEPS: 1. determine the genotypes of the parent organisms 2. write down your "cross" (mating) 3. draw a p square Parent genotypes: TT and t t Cross T T t t

19 Punnett square 4. "split" the letters of the genotype for each parent & put them "outside" the p square 5. determine the possible genotypes of the offspring by filling in the p square 6. summarize results (genotypes & phenotypes of offspring) T T t T t T t Genotypes: 100% T t t T t T t Phenotypes: 100% Tall plants

20 Monohybrid cross: F 2 generation If you let the F1 generation self fertilize, the next monohybrid cross would be: (offspring F 2 ) T t T t T t T T T T t T t t t t (tall) (tall) Genotypes: 1 TT= Tall 2 Tt = Tall 1 tt = dwarf Genotypic ratio= 1:2:1 Phenotype: 3 Tall 1 dwarf Phenotypic ratio= 3:1

21 Mendel s Principles Principle of Dominance: One allele masked another, one allele was dominant over the other in the F 1 generation. Principle of Segregation: When gametes are formed, the pairs of hereditary factors (genes) become separated, so that each sex cell (egg/sperm) receives only one kind of gene.

Caused by mutant recessive gene carried by 1 in 20 people of European descent One in 400 Caucasian

22 Human case: CF Mendel s Principles of Heredity apply universally to all organisms. Cystic Fibrosis: a lethal genetic disease affecting Caucasians. Caused by mutant recessive gene carried by 1 in 20 people of European descent One in 400 Caucasian couples will be both carriers of CF 1 in 4 children will have it. CF disease affects transport in tissues mucus is accumulated in lungs, causing infections.

23 Inheritance pattern of CF IF two parents carry the recessive gene of Cystic Fibrosis (cf), that is, they are heterozygous (Cf cf), one in four of their children is expected to be homozygous for cf and have the disease: Cf cf Cf Cf = normal Cf cf = carrier, no symptoms cf cf = has cystic fibrosis Cf cf Cf Cf Cf cf Cf cf cf cf

24 Probabilities Of course, the 1 in 4 probability of getting the disease is just an expectation, and in reality, any two carriers may have normal children. However, the greatest probability is for 1 in 4 children to be affected. Important factor when prospective parents are concerned about their chances of having affected children. Now, 1 in 29 Americans is a symptom less carrier (Cf cf) of the gene.

25 Dihybrid crosses Matings that involving parents that differ in two genes (two independent traits) For example flower color P = purple (dominant) p = white (recessive) and stem length: T = tall t = dwarf

26 Dihybrid cross: flower color and stem length TT PP tt pp (tall, purple) (dwarf, white) Possible Gametes for parents T P and t p T P t p Tt P p F1 Generation: All tall, purple flowers (Tt Pp)

27 Dihybrid cross F 2 If F 1 generation is allowed to self pollinate, Mendel observed 4 phenotypes: Possible gametes: TP Tp tp tp Tt Pp Tt Pp (tall, purple) TP Tp tp tp (tall, purple) TP Tp tp tp TTPP TTPp TtPP TTPp TTpp TtPp TtPp Ttpp TtPP TtPp ttpp ttpp TtPp Ttpp ttpp ttpp Four phenotypes observed Tall, purple (9); Tall, white (3); Dwarf, purple (3); Dwarf white (1)

28 Dihybrid cross 9 Tall purple 3 Tall white 3 Dwarf purple 1 Dwarf white TP Tp tp tp TP Tp tp tp TTPP TTPp TtPP TtPp TTPp TTpp TtPp Ttpp TtPP TtPp ttpp ttpp TtPp Ttpp ttpp ttpp Phenotype Ratio = 9:3:3:1

29 Genotype ratios (9): 1 TTPP 2 TTPp 2 TtPP 4 TtPp 1 TTpp 2 Ttpp 1 ttpp 2 ttpp 1 ttpp Dihybrid cross Phenotypes: Tall, purple (9) Tall, white (3) Dwarf, purple (3) Dwarf, white (1)

30 Principle of Independent Assortment Based on these results, Mendel postulated the Principle of Independent Assortment: Members of one gene pair segregate independently from other gene pairs during gamete formation Genes get shuffled these many combinations are one of the advantages of sexual reproduction

meiosis (special cell division that yields gametes)

31 Relation of gene segregation to meiosis There s a correlation between the movement of chromosomes in meiosis (special cell division that yields gametes) and the segregation of alleles that occurs in meiosis

32 Test cross When you have an individual with an unknown genotype, you do a test cross. Cross with a homozygous recessive individual. For example, a plant with purple flowers can either be PP or Pp therefore, you cross the plant with a pp (white flowers, homozygous recessive) P? pp

33 Test cross If you get all 100% purple flowers, then the unknown parent was PP p P P p P P p If you get 50% white, 50% purple flowers, then the unknown parent was Pp p p P p P P p P p p p p p P p p p

34 Dihybrid test cross?? If you had a tall, purple plant, how would you know what genotype it is?? tt pp TTPP TTPp TtPP TtPp

36 Beyond Mendelian Genetics: Incomplete Dominance Mendel was lucky! Traits he chose in the pea plant showed up very clearly One allele was dominant over another, so phenotypes were easy to recognize. But sometimes phenotypes are not very obvious

37 Incomplete Dominance Snapdragon flowers come in many colors. If you cross a red snapdragon (RR) with a white snapdragon (rr) R R r r You get PINK flowers (Rr) R r

38 Incomplete dominance When F1 generation (all pink flowers) is self pollinated, the F2 generation is 1:2:1 red, pink, white Incomplete Dominance R r R R R R r r R r r r

39 Incomplete dominance What happens if you cross a pink with a white? A pink with a red?

40 Incomplete Dominance Other Examples: Hair Texture: Curly hair is incompletely dominant (HH) to straight hair (SS). Those who have wavy hair are intermediate (HS). Inter eye Distance: Close set eyes are incompletely dominant (DD) to eyes set far apart (FF). Medium set eyes are DF. Lip Protrusion: Protruding lips are incompletely dominant (PP) to nonprotruding lips (NN). Slightly protruding lips are intermediate (PN).

41 CODoMiNANCE Two alleles that are equally dominant One allele that is recessive to both When both dominants are present, both show, not a mid range. Roan coat color in ungulates (cows!!) giving both brown and white HAIRS!

42 Co dominance smokey blue roan

43 CoDominance human blood groups

44 Blood Donation Type O-negative blood does not have any antigens. It is called the "universal donor" type because it is compatible with any blood type. Type AB-positive blood is called the "universal recipient" type because a person who has it can receive blood of any type. Although "universal donor" and "universal recipient" types may be used to classify blood in an emergency, blood type tests are always done to prevent transfusion reactions

45 ABO and Rh Blood Type Frequencies in the United States ABO type RH type How many have it Total O + 38% 45% O 7% A + 34% 40% A 6% B + 9% 11% B 2% AB + 3% 4% AB 1%

46 What blood can you receive? CAN RECEIVE O ** O + B B + A A + AB AB AB * * * * * * * * AB * * * * A + * * * * A * * B + * * * * B * * O + * * O *

47 Codominance human blood groups

48 Multiple alleles More than one allele exists within a population Example: human blood groups A, B, AB, O

49 POLYGENIC traits Poly = many Genic = genes Height, Hair and Eye Colors in humans A vast number of possibilities

51 AaBbCc AaBbCc Sperm 1 / 1 8 / 1 8 / 1 8 / 1 8 / 1 8 / 1 8 / 1 8 / 8 1 / 8 1 / 8 1 / 8 Eggs 1 / 8 1 / 8 1 / 8 1 / 8 1 / 8 Phenotypes: Number of 1 / 64 6 / / / / 64 6 / 64 1 / 64 dark-skin alleles:

52 LINKED GENES Two genes for two different traits are on the same chromosome. Are they passed on together? Light Hair/Light eyes Red Hair/Freckles

53 SEX LINKED Sex Linked on the X or Y Chromosome Most often on X Use X or X h to show it is on the X. Hemophilia, Duschenne s Muscular Dystrophy, or Colorblindness

54 SEX LINKED X X = normal Female X Y = normal Male X h Y = male with hemophilia X h X = female carrier X h X h = female with hemophilia

56 Pedigrees Mutations are accidental changes in genes. rare, random, and usually result in recessive alleles pedigrees used to study heredity (inheritance patterns) hemophilia inherited condition where blood is slow to clot or does not clot at all only expressed when individual has no copies of the normal allele Royal hemophilia sex linked

57 Royal Hemophilia Pedigree

58 Summary of Genetics Chromosomes carry hereditary info (genes) Chromosomes (and genes) occur in pairs New combinations of genes occur in sexual reproduction Monohybrid vs. Dihybrid crosses Mendel s Principles: Dominance: one allele masks another Segregation: genes become separated in gamete formation Independent Assortment: Members of one gene pair segregate independently from other gene pairs during gamete formation

Introduction to Genetics. DANILO V. ROGAYAN JR. Faculty, Department of Natural Sciences

Introduction to Genetics. DANILO V. ROGAYAN JR. Faculty, Department of Natural Sciences Introduction to Genetics DANILO V. ROGAYAN JR. Faculty, Department of Natural Sciences GENETICS Introduction to Genetics and heredity Gregor Mendel a brief bio Genetic terminology (glossary) Monohybrid