BioXplain The Alliance for Integrative Biology

Transcription

1 The Alliance for Integrative Biology The First Open Platform for Iterative, Predictive and Integrative Biology Manuel GEA Co-founder & CEO Bio-Modeling Systems BioXplain 2009

2 Pharma R&D critical challenge Despite increasing investments in Technology and I.T., the major drugs and biological products submissions to FDA are constantly declining The success rates from first-in-human to registration is on average 11% and does not take into account products withdrawals after launch. Clearly, the issue is not solely a question of technologies! Source: FDA Critical Path Initiative March 2004 BioXplain

3 Pharma R&D critical challenge Yet, the bottlenecks and major reasons for attrition are well known. Discovery research Preclinical develop. Translational medicine Clinical develop. Pharmaco - vigilance Predictive pharmacology Predictive toxicology Biomarkers identification Patient recruitment Biomarkers validation Risk assessment with regulatory authorities Efficacy Safety Both Source: European EFPIA IMI program, 2005 But,.

4 Mechanisms of life are not cartesian: in living cells and tissues numerous components simultaneously interact with multiple partners. Numerous interaction complexes produce multiple concurrent events. The biological effects result from the differential integration of ALL these events. BMSystems; December 2005 Représentation Spatial representation spatiale of des cellular processus processes cellulaires arising naissant from two de independent 2 signaux indépendants signals

5 The biological Reality From genes to physiological functions Four series of deconvolutions and discontinuities. One gene = several different physiological functions Gene mrna 1 Protein mrna 2 mrna 3 mrna n Functional Protein 1 Functional Protein 2 Functional Protein x Complex A Complex B Complex Z Life is a non-linear, integrative process. There are few linear links between genes and physiological effects. At each step, the alternative options are context-dependent AND cannot be directly predicted. BioXplain

6 The Pharma R&D dilemma 1. The mechanisms of life and diseases are non-linear and integrative processes that can t be correctly described using cartesian / mathematic tools. 2. The value of Omics technologies and bioinformatics is limited by the garbage in, garbage out reality. All the information produced is necessarily ALWAYS incomplete, biased and erroneous to an unknown extent. 3. The growing impact of translational medicine, the flood of clinical trials, patients data, etc generate tons of heterogeneous information that can t be efficiently used without robust contextualizing tools & processes. Mathematical modeling failed to provide operational answers addressing these three major issues. We need to change our point of view. BioXplain

7 BMSystems CADI models CADI (Computer Assisted Deductive Integration) based on negative selection processes is a disruptive innovation to build detailed validated biological interaction maps The CADI models belong to the non-mathematical holistic and heuristic class of models. They represent inter-cellular and/or intra-cellular mechanisms associated with a biological status. CADI models reveal the pertinent biological mechanisms, the therapeutic targets & the associated biomarkers, leading to novel, proprietary discoveries. The complex system to study A CADI model representing the system in a specific context Organs level Cells level Molecules level BioXplain

8 Let s go a step beyond The pharmaceutical industry now requires its scientists and clinicians to harness & explain the non-linear mechanisms of health and diseases. But they need simple and adapted systems and tools to help them work. Three complementary, cutting edge life sciences companies decided to collaborate to address this challenge: Bio-Modeling Systems: The inventor of CADI methodologies and tools, including the collaborative iterative validation process. BioXpr: The most diversified provider of Software solutions built from a versatile library of modules to create real-added value from OMICS datasets. Kayentis: The solution provider of the first integrated platform to capture and deliver real time contextualized research & clinical information. The first Open Platform for Iterative Predictive and Integrative Biology. Now we can Bio-Xplain! BioXplain

9 BioXplain The first Open Platform for Iterative Predictive and Integrative Biology Inputs Genotype, Phenotype and environmental data Molecular Profile data Patient Sample: Normal and disease state Drug treated, cell culture, patient samples New hypothesis, New experimental design, Literature data New hypothesis, New experimental design, Literature data BioXplain CADI maps BioXpr & Kayentis Software Outputs Mechanism of disease New pathways Novel relevant drug targets, Biomarkers of disease development Mechanism of drug efficacy and safety Compare mechanisms between candidates Surrogate biomarkers for single or combination treatments Drug synergies for better treatments, Drug repositioning/reprofiling Pharmacogenomics markers for better clinical trials and companion medicine

10 BioXplain outputs Smarter, faster, safer pharmaceuticals and life sciences R&D Outputs Disease understanding/ redefinition, new therapeutic strategies, new associations of existing molecules, BioXplain Identification/selection of relevant predictive Biomarkers R&D programs evaluation. Predictive efficacy and safety profiles, drug (re)positioning /(re)profiling/ rescue.

11 BioXpr: The Integrative Software & Services Platform DNA Sequence Your Protein Sequence Data Data analysis / modeling Genome Annotation & HT sequencing Embedded soft. Information systems Genomics Protein Structure/function Systems Biology Biostats/Clustering BioXplain

12 Kayentis: The Integrated Platform to capture and deliver real time contextualized information 45 countries, 5 continents, users 3 Millions pages captured from pharma, hospitals, Research centers, patients BioXplain

13 BioXplain Three partners sharing same values and history Company Company specificities Created by senior biologists, bioinformaticians and engineers. Inventor of CADI methodologies and tools Research-based biotech company. The company does not sell its technologies nor access to its technologies. 1 spin-off Pherecydes-Pharma. Created by senior biologists and bioinformaticians. Collect, format, store, integrate, analyze and interpret from literature and experimental data ( OMICS, environmental data, ) Technology based on a library of powerful software modules that can be easily combined to create specific custom tools. Created by senior scientists and clinicians. Collect, carry and share research, pre-clinical, clinical and post-marketing data using Digital Pen and Paper technology, DPP. Full, un-biased and complete data capture in real-time ensure the completeness and integrity of the data. Company information The R&D booster for life sciences discoveries, Member of BiO. Established : people based in France, 100 people. working on BMSystems research programs Active in the pharma, Industrial biotech and biosecurity businesses. A State of the Arts software solutions company. Established people based in Namur Belgium. Namur University Spin-off. Numerous clients in the pharma, red and green biotech industries. A software provider with strong growth Established in staff based in France (Gif-sur-Yvette, Grenoble, Reims) and in the United States (Philadelphia). More than users in 44 countries on 5 continents.

14 BioXplain: partners track records World s first in-vitro independently validated in-silico model of a complex human disease: Ras breast cancer. Publication in 2003 with INSERM Unit 553 in Nucleic Acids Research. First integrated platform to capture and deliver real time contextualized research & clinical information in 2004 in the fields of pre-clinical and clinical studies based on the Forms Automation System (FAS) architecture, developed by Hewlett Packard. The most diversified provider of Software solutions built from a versatile library of modules to create real-added value from OMICS datasets in First Biopharmaceutical company created with three patents based on CADI models outputs in the field of infectious diseases and nanobiotechnologies. Pherecydes-Pharma in World s first in-vivo independently validated in-silico model of a human complex disease in neurodegenerative disease field (Creutzfeldt Jakob) in 2008 with CEA life Sciences Dept. Publication pending. First European leading collaborative Industrial Biotech platform in 2007 in the World class industrial biotech cluster in France. BioXplain

15 BioXplain : First value proposal Existing CADI models and maps 8 CADI models & seven «proto-models (PM)», in 6 major medical areas for optimization of the drug development process and the diversification of drugs applications. Pathologies / Applications CNS Oncology - Systemics Models ready for experimental evaluation Alzheimer disease Experimentally validated models Creutzfeldt-Jakob Experimentally validated and published models Breast cancer Proto-Models Pain, migraine Psychiatric disorders Fribromyalgia Metastasis Tamoxifen resistance Infection Immunology Antibacterial bioagent Hepatitis C Chronic Fatigue Syndrome Tissue differentiation Müllerian duct regression Adipocytes growth control Metabolism Hypercholesterolemia BioXplain

16 Founders clients & partners BioXplain

17 BioXplain The First Open Platform for Iterative, Predictive and Integrative Biology Ready for integrated business BioXpr Dr.Benjamin Damien Co-founder & CEO Rue du Séminaire, Namur, Belgium Bio-Modeling Systems Manuel GEA Co-founder & CEO 26, rue Saint Lambert Paris, France Kayentis Philippe Berna Co-founder & CEO 4 Route de la Noue, Gif-sur-Yvette, France pberna@kayentis.com BioXplain