Biotechnology Regents Biology

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1 Biotechnology

2 We have been manipulating DNA for generations! Artificial breeding/ Selective u creating new breeds of animals & new crop plants to improve our food

3 Animal breeding

4 Breeding food plants Descendants of the wild mustard u the Cabbage family

5 Breeding food plants Evolution of modern corn (right) from ancestral teosinte (left).

6 A Brave New World

7 A Brave New World

8 A Brave New World

9 A Brave New World

10 A Brave New World

11 A Brave New World

12 A Brave New World

13 A Brave New World

14 The code is universal Since all living organisms u use the same DNA u use the same code book u read their genes the same way

15 TACGCACATTTACGTACGCGGATGCCGCGACTATGATC ACATAGACATGCTGTCAGCTCTAGTAGACTAGCTGACT CGACTAGCATGATCGATCAGCTACATGCTAGCACACYC GTACATCGATCCTGACATCGACCTGCTCGTACATGCTA CTAGCTACTGACTCATGATCCAGATCACTGAAACCCTA GATCGGGTACCTATTACAGTACGATCATCCGATCAGAT CATGCTAGTACATCGATCGATACTGCTACTGATCTAGC TCAATCAAACTCTTTTTGCATCATGATACTAGACTAGC TGACTGATCATGACTCTGATCCCGTAGATCGGGTACCT ATTACAGTACGATCATCCGATCAGATCATGCTAGTACA TCGATCGATACTGCTACTGATCTAGCTCAATCAAACTC TTTTTGCATCATGATACTAGACTAGCTGACTGATCATG ACTCTGATCCCGTAGATCGGGTACCTATTACAGTACGA TCATCCGATCAGATCATGCTAGTACATCGATCGATACT

16 TACGCACATTTACGTACGCGGATGCCGCGACTATGATC ACATAGACATGCTGTCAGCTCTAGTAGACTAGCTGACT CGACTAGCATGATCGATCAGCTACATGCTAGCACACYC human genome GTACATCGATCCTGACATCGACCTGCTCGTACATGCTA 3.2 billion bases CTAGCTACTGACTCATGATCCAGATCACTGAAACCCTA GATCGGGTACCTATTACAGTACGATCATCCGATCAGAT CATGCTAGTACATCGATCGATACTGCTACTGATCTAGC TCAATCAAACTCTTTTTGCATCATGATACTAGACTAGC TGACTGATCATGACTCTGATCCCGTAGATCGGGTACCT ATTACAGTACGATCATCCGATCAGATCATGCTAGTACA TCGATCGATACTGCTACTGATCTAGCTCAATCAAACTC TTTTTGCATCATGATACTAGACTAGCTGACTGATCATG ACTCTGATCCCGTAGATCGGGTACCTATTACAGTACGA TCATCCGATCAGATCATGCTAGTACATCGATCGATACT

17 TACGCACATTTACGTACGCGGATGCCGCGACTATGATC ACATAGACATGCTGTCAGCTCTAGTAGACTAGCTGACT CGACTAGCATGATCGATCAGCTACATGCTAGCACACYC human genome GTACATCGATCCTGACATCGACCTGCTCGTACATGCTA 3.2 billion bases CTAGCTACTGACTCATGATCCAGATCACTGAAACCCTA GATCGGGTACCTATTACAGTACGATCATCCGATCAGAT CATGCTAGTACATCGATCGATACTGCTACTGATCTAGC TCAATCAAACTCTTTTTGCATCATGATACTAGACTAGC TGACTGATCATGACTCTGATCCCGTAGATCGGGTACCT ATTACAGTACGATCATCCGATCAGATCATGCTAGTACA TCGATCGATACTGCTACTGATCTAGCTCAATCAAACTC TTTTTGCATCATGATACTAGACTAGCTGACTGATCATG ACTCTGATCCCGTAGATCGGGTACCTATTACAGTACGA TCATCCGATCAGATCATGCTAGTACATCGATCGATACT

18 Can we mix genes from one creature to another?

19 Can we mix genes from one creature to another?

20 Can we mix genes from one creature to another?

21 Can we mix genes from one creature to another?

22 Can we mix genes from one creature to another? YES!

23 Mixing genes for medicine

24 Mixing genes for medicine Allowing organisms to produce new proteins

25 Mixing genes for medicine Allowing organisms to produce new proteins u bacteria producing human insulin

26 Mixing genes for medicine Allowing organisms to produce new proteins u bacteria producing human insulin u bacteria producing human growth hormone

27 How do we do mix genes?

28 How do we do mix genes? Genetic engineering

29 How do we do mix genes? Genetic engineering u find gene

30 How do we do mix genes? Genetic engineering u find gene u cut DNA in both organisms

31 How do we do mix genes? Genetic engineering u find gene u cut DNA in both organisms u paste gene from one creature into other creature s DNA

32 How do we do mix genes? Genetic engineering u find gene u cut DNA in both organisms u paste gene from one creature into other creature s DNA u insert new chromosome into organism

33 How do we do mix genes? Genetic engineering u find gene u cut DNA in both organisms u paste gene from one creature into other creature s DNA u insert new chromosome into organism u organism copies new gene as if it were its own

34 How do we do mix genes? Genetic engineering u find gene u cut DNA in both organisms u paste gene from one creature into other creature s DNA u insert new chromosome into organism u organism copies new gene as if it were its own u organism reads gene as if it were its own

35 How do we do mix genes? Genetic engineering u find gene u cut DNA in both organisms u paste gene from one creature into other creature s DNA u insert new chromosome into organism u organism copies new gene as if it were its own u organism reads gene as if it were its own u organism produces NEW protein: Remember: we all use the same genetic code!

36 Cutting DNA GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

37 Cutting DNA DNA scissors GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

38 Cutting DNA DNA scissors u enzymes that cut DNA GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

39 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

40 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes used by bacteria to cut up DNA of attacking viruses GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

41 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes used by bacteria to cut up DNA of attacking viruses EcoRI, HindIII, BamHI GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

42 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes used by bacteria to cut up DNA of attacking viruses EcoRI, HindIII, BamHI u cut DNA at specific sites GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

43 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes used by bacteria to cut up DNA of attacking viruses EcoRI, HindIII, BamHI u cut DNA at specific sites enzymes look for specific base sequences GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

44 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes used by bacteria to cut up DNA of attacking viruses EcoRI, HindIII, BamHI u cut DNA at specific sites enzymes look for specific base sequences GTAACG AATTCACGCTT GTAACGAATTCACGCTT CATTGCTTAA GTGCGAA CATTGCTTAAGTGCGAA

45 Cutting DNA DNA scissors u enzymes that cut DNA u restriction enzymes used by bacteria to cut up DNA of attacking viruses EcoRI, HindIII, BamHI u cut DNA at specific sites enzymes look for specific base sequences GTAACG AATTCACGCTT GTAACGAATTCACGCTT CATTGCTTAA GTGCGAA CATTGCTTAAGTGCGAA

46 Restriction enzymes

47 Restriction enzymes Cut DNA at specific sites

48 Restriction enzymes Cut DNA at specific sites u leave sticky ends

49 Restriction enzymes Cut DNA at specific sites u leave sticky ends GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

50 Restriction enzymes Cut DNA at specific sites u leave sticky ends restriction enzyme cut site GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA

51 Restriction enzymes Cut DNA at specific sites u leave sticky ends restriction enzyme cut site GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA restriction enzyme cut site

52 Restriction enzymes Cut DNA at specific sites u leave sticky ends restriction enzyme cut site GTAACGAATTCACGCTT CATTGCTTAAGTGCGAA restriction enzyme cut site GTAACG AATTCACGCTT CATTGCTTAA GTGCGAA

53 Sticky ends

54 Sticky ends Cut other DNA with same enzymes

55 Sticky ends Cut other DNA with same enzymes u leave sticky ends on both

56 Sticky ends Cut other DNA with same enzymes u leave sticky ends on both u can glue DNA together at sticky ends

57 Sticky ends Cut other DNA with same enzymes u leave sticky ends on both u can glue DNA together at sticky ends GTAACG AATTCACGCTT CATTGCTTAA GTGCGAA gene you want

58 Sticky ends Cut other DNA with same enzymes u leave sticky ends on both u can glue DNA together at sticky ends GTAACG AATTCACGCTT CATTGCTTAA GTGCGAA GGACCTG AATTCCGGATA CCTGGACTTAA GGCCTAT gene you want chromosome want to add gene to

59 Sticky ends Cut other DNA with same enzymes u leave sticky ends on both u can glue DNA together at sticky ends GTAACG AATTCACGCTT CATTGCTTAA GTGCGAA GGACCTG AATTCCGGATA CCTGGACTTAA GGCCTAT gene you want chromosome want to add gene to GGACCTG AATTCACGCTT CCTGGACTTAA GTGCGAA combined DNA

60 Sticky ends help glue genes together cut sites gene you want cut sites TTGTAACGAATTCTACGAATGGTTACATCGCCGAATTCACGCTT AACATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGTGCGAA

61 Sticky ends help glue genes together cut sites gene you want cut sites TTGTAACGAATTCTACGAATGGTTACATCGCCGAATTCACGCTT AACATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGTGCGAA sticky ends AATTCTACGAATGGTTACATCGCCG GATGCTTACCAATGTAGCGGCTTAA isolated gene

62 Sticky ends help glue genes together cut sites gene you want cut sites TTGTAACGAATTCTACGAATGGTTACATCGCCGAATTCACGCTT AACATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGTGCGAA sticky ends AATTCTACGAATGGTTACATCGCCG GATGCTTACCAATGTAGCGGCTTAA isolated gene cut sites chromosome want to add gene to AATGGTTACTTGTAACG AATTCTACGATCGCCGATTCAACGCTT TTACCAATGAACATTGCTTAA GATGCTAGCGGCTAAGTTGCGAA

63 Sticky ends help glue genes together cut sites gene you want cut sites TTGTAACGAATTCTACGAATGGTTACATCGCCGAATTCACGCTT AACATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGTGCGAA sticky ends AATTCTACGAATGGTTACATCGCCG GATGCTTACCAATGTAGCGGCTTAA isolated gene cut sites chromosome want to add gene to AATGGTTACTTGTAACG AATTCTACGATCGCCGATTCAACGCTT TTACCAATGAACATTGCTTAA GATGCTAGCGGCTAAGTTGCGAA sticky ends stick together chromosome with new gene added TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC

64 Sticky ends help glue genes together cut sites gene you want cut sites TTGTAACGAATTCTACGAATGGTTACATCGCCGAATTCACGCTT AACATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGTGCGAA sticky ends AATTCTACGAATGGTTACATCGCCG GATGCTTACCAATGTAGCGGCTTAA isolated gene cut sites chromosome want to add gene to AATGGTTACTTGTAACG AATTCTACGATCGCCGATTCAACGCTT TTACCAATGAACATTGCTTAA GATGCTAGCGGCTAAGTTGCGAA DNA ligase joins the strands sticky ends stick together chromosome with new gene added TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC

65 Sticky ends help glue genes together cut sites gene you want cut sites TTGTAACGAATTCTACGAATGGTTACATCGCCGAATTCACGCTT AACATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGTGCGAA sticky ends AATTCTACGAATGGTTACATCGCCG GATGCTTACCAATGTAGCGGCTTAA isolated gene cut sites chromosome want to add gene to AATGGTTACTTGTAACG AATTCTACGATCGCCGATTCAACGCTT TTACCAATGAACATTGCTTAA GATGCTAGCGGCTAAGTTGCGAA DNA ligase joins the strands sticky ends stick together Recombinant DNA molecule chromosome with new gene added TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC

66 Why mix genes together? Gene produces protein in different organism or different individual human insulin gene in bacteria TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC

67 Why mix genes together? Gene produces protein in different organism or different individual human insulin gene in bacteria TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC new protein from organism aa ex: human insulin from bacteria aa aa aa aa aa aa aa aa aa

68 Why mix genes together? Gene produces protein in different organism or different individual human insulin gene in bacteria TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC new protein from organism aa ex: human insulin from bacteria aa aa aa aa aa aa aa aa aa bacteria

69 Why mix genes together? Gene produces protein in different organism or different individual human insulin gene in bacteria TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC new protein from organism aa ex: human insulin from bacteria aa aa aa aa aa aa aa aa aa bacteria human insulin

70 Why mix genes together? How can bacteria read human DNA? Gene produces protein in different organism or different individual human insulin gene in bacteria TAACGAATTCTACGAATGGTTACATCGCCGAATTCTACGATC CATTGCTTAAGATGCTTACCAATGTAGCGGCTTAAGATGCTAGC new protein from organism aa ex: human insulin from bacteria aa aa aa aa aa aa aa aa aa bacteria human insulin

71 Uses of genetic engineering

72 Uses of genetic engineering Genetically modified organisms (GMO)

73 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins

74 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins Protect crops from insects: BT corn

75 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins Protect crops from insects: BT corn w corn produces a bacterial toxin that kills corn borer (caterpillar pest of corn)

76 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins Protect crops from insects: BT corn w corn produces a bacterial toxin that kills corn borer (caterpillar pest of corn) Extend growing season: fishberries

77 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins Protect crops from insects: BT corn w corn produces a bacterial toxin that kills corn borer (caterpillar pest of corn) Extend growing season: fishberries w strawberries with an anti-freezing gene from flounder

78 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins Protect crops from insects: BT corn w corn produces a bacterial toxin that kills corn borer (caterpillar pest of corn) Extend growing season: fishberries w strawberries with an anti-freezing gene from flounder Improve quality of food: golden rice

79 Uses of genetic engineering Genetically modified organisms (GMO) u enabling plants to produce new proteins Protect crops from insects: BT corn w corn produces a bacterial toxin that kills corn borer (caterpillar pest of corn) Extend growing season: fishberries w strawberries with an anti-freezing gene from flounder Improve quality of food: golden rice w rice producing vitamin A improves nutritional value

80 Bacteria Bacteria are great! u one-celled organisms u reproduce by mitosis easy to grow, fast to grow w generation every ~20 minutes

81 Bacteria Bacteria are great! u one-celled organisms u reproduce by mitosis easy to grow, fast to grow w generation every ~20 minutes

82 Bacteria Bacteria are great! u one-celled organisms u reproduce by mitosis easy to grow, fast to grow w generation every ~20 minutes

83 Bacterial DNA

84 Bacterial DNA Single circular chromosome u only one copy = haploid u no nucleus

85 Bacterial DNA Single circular chromosome u only one copy = haploid u no nucleus Other DNA = plasmids!

86 Bacterial DNA Single circular chromosome u only one copy = haploid u no nucleus Other DNA = plasmids! bacteria chromosome

87 Bacterial DNA Single circular chromosome u only one copy = haploid u no nucleus Other DNA = plasmids! bacteria chromosome plasmids

88 There s more

89 There s more Plasmids

90 There s more Plasmids u small extra circles of DNA

91 There s more Plasmids u small extra circles of DNA u carry extra genes that bacteria can use

92 There s more Plasmids u small extra circles of DNA u carry extra genes that bacteria can use u can be swapped between bacteria

93 There s more Plasmids u small extra circles of DNA u carry extra genes that bacteria can use u can be swapped between bacteria bacterial sex!!

94 There s more Plasmids u small extra circles of DNA u carry extra genes that bacteria can use u can be swapped between bacteria bacterial sex!! rapid evolution = antibiotic resistance

95 There s more Plasmids u small extra circles of DNA u carry extra genes that bacteria can use u can be swapped between bacteria bacterial sex!! rapid evolution = antibiotic resistance u can be picked up from environment

96 Grow bacteria make more

97 Grow bacteria make more plasmid

98 Grow bacteria make more gene from other organism plasmid +

99 Grow bacteria make more gene from other organism recombinant plasmid plasmid + vector

100 Grow bacteria make more gene from other organism recombinant plasmid transformed bacteria plasmid + vector

101 Grow bacteria make more gene from other organism recombinant plasmid transformed bacteria plasmid + vector grow bacteria

102 Grow bacteria make more gene from other organism recombinant plasmid transformed bacteria plasmid + vector grow bacteria harvest (purify) protein

103 Applications of biotechnology

104

105 I m a very special pig! Got any Questions?