Bionano Tools v1.3 Release Notes

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Winifred Parrish
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2 Table of Contents Legal Notice... 3 Revision History... 4 Bionano Tools... 4 Introduction... 4 Compatibility... 4 IrysSolve Servers... 4 Tools... 4 Technical Assistance Rev A, Bionano Tools v1.3 Release Notes Page 2 of 5

3 Legal Notice For Research Use Only. Not for use in diagnostic procedures. This material is protected by United States Copyright Law and International Treaties. Unauthorized use of this material is prohibited. No part of the publication may be copied, reproduced, distributed, translated, reverseengineered or transmitted in any form or by any media, or by any means, whether now known or unknown, without the express prior permission in writing from Bionano Genomics. Copying, under the law, includes translating into another language or format. The technical data contained herein is intended for ultimate destinations permitted by U.S. law. Diversion contrary to U. S. law prohibited. This publication represents the latest information available at the time of release. Due to continuous efforts to improve the product, technical changes may occur that are not reflected in this document. Bionano Genomics reserves the right to make changes in specifications and other information contained in this publication at any time and without prior notice. Please contact Bionano Genomics Customer Support for the latest information. BIONANO GENOMICS DISCLAIMS ALL WARRANTIES WITH RESPECT TO THIS DOCUMENT, EXPRESSED OR IMPLIED, INCLUDING BUT NOT LIMITED TO THOSE OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. TO THE FULLEST EXTENT ALLOWED BY LAW, IN NO EVENT SHALL BIONANO GENOMICS BE LIABLE, WHETHER IN CONTRACT, TORT, WARRANTY, OR UNDER ANY STATUTE OR ON ANY OTHER BASIS FOR SPECIAL, INCIDENTAL, INDIRECT, PUNITIVE, MULTIPLE OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR ARISING FROM THIS DOCUMENT, INCLUDING BUT NOT LIMITED TO THE USE THEREOF, WHETHER OR NOT FORESEEABLE AND WHETHER OR NOT BIONANO GENOMICS IS ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. Patents Products of Bionano Genomics may be covered by one or more U.S. or foreign patents. Trademarks The Bionano Genomics logo and names of Bionano Genomics products or services are registered trademarks or trademarks owned by Bionano Genomics in the United States and certain other countries. Bionano Genomics, Irys, IrysView, IrysChip, IrysPrep, IrysSolve, Saphyr, Saphyr Chip, and Bionano Access are trademarks of Bionano Genomics, Inc. All other trademarks are the sole property of their respective owners. No license to use any trademarks of Bionano Genomics is given or implied. Users are not permitted to use these trademarks without the prior written consent of Bionano Genomics. The use of these trademarks or any other materials, except as permitted herein, is expressly prohibited and may be in violation of federal or other applicable laws. Copyright 2018 Bionano Genomics, Inc. All rights reserved Rev A, Bionano Tools v1.3 Release Notes Page 3 of 5

4 Revision History Revision A Notes Initial release of document. Bionano Tools This document describes the v1.2 release of Bionano Tools. In this document we will provide an overview of what is changing with this release so that you may better understand the impact of moving to this version of our software. Should you have any questions please contact support@bionanogenomics.com. Introduction Bionano Tools are installed on Saphyr Compute, Bionano Compute, and Bionano Access Servers before server shipment and installation. IrysSolve servers, which have been in use with Bionano Access, also have Bionano Tools installed during the upgrade. The Bionano Tools (folder tools ) is located at the /home/bionano directory on the compute server. The folder contains a collection of tools and scripts, including our computation pipeline Bionano Solve (see P/N for Bionano Solve 3.3 release notes). Each individual tool is versioned independently. These tools together perform computation jobs on the compute server. Compatibility This version of Tools is compatible with Bionano Access 1.3 IrysSolve Servers Tools If you are using an IrysSolve server to perform computational analysis on data generated by the Saphyr instrument, contact Bionano Support to reconfigure the IrysSolve prior to running any samples labeled with the DLS chemistry. Below are the tools included in this release. Tool Folder Pre-update version Post-update version Comment access Access integration scripts pipeline Solve3.2.2_ Solve3.3_ Bionano Solve scripts Rev A, Bionano Tools v1.3 Release Notes Page 4 of 5

5 Technical Assistance For technical assistance, contact Bionano Genomics Technical Support. You can retrieve documentation on Bionano products, SDS's, certificates of analysis, frequently asked questions, and other related documents from the Support website or by request through and telephone. Type Contact Phone Hours of Operation: Monday through Friday, 9:00 a.m. to 5:00 p.m., PST US: +1 (858) Website Bionano Genomics, Inc Towne Centre Drive, Suite 100 San Diego, CA Rev A, Bionano Tools v1.3 Release Notes Page 2 of 5