1. Published. Journal articles

Transcription

1 Publications Supported by CSCOR and/or Using Observation Products Supported by CSCOR In Association with the Narragansett Bay Coastal Hypoxia Research Program Grants 1. Published Journal articles Brush, M.J. and J.W. Brawley Adapting the light biomass (BZI) models of phytoplankton primary production to shallow marine ecosystems. Journal of Marine Systems 75: CHRP publication no. 111 Brush, M.J. and L.A. Harris (eds) Special issue of Ecological Modelling: "Advances in Modeling Estuarine and Coastal Ecosystems: Approaches, Validation, and Applications". Ecological Modelling 221. Brush, M.J. and L.A. Harris Introduction to the special issue of Ecological Modelling: "Advances in Modeling Estuarine and Coastal Ecosystems: Approaches, Validation, and Applications". Ecological Modelling 221: Brush, M.J. and S.W. Nixon Modeling the role of macroalgae in a shallow sub-estuary of Narragansett Nay, RI (USA). Ecological Modelling 221: Codiga, D.L., H.E. Stoffel, C.F. Deacutis, S. Kiernan, and C.A. Oviatt, Narragansett Bay hypoxic event characteristics based on fixed-site monitoring network time series: Intermittency, geographic distribution, spatial synchronicity, and inter-annual variability. Estuaries and Coasts, DOI /s Codiga, D. L., Density stratification in an estuary with complex geometry: Driving processes and relationship to hypoxia on monthly to inter-annual timescales. J. Geophys. Res., doi: /2012jc Deacutis, C.F., D. Murray, W. Prell, E. Saarman, and L. Korhun Hypoxia in the Upper Half of Narragansett Bay, RI During August 2001 and Northeastern Naturalist 13 Special Issue 4: Fulweiler, R.W. and S.W. Nixon Responses of benthic-pelagic coupling to climate change in a temperate estuary. Hydrobiologia 629: Fulweiler, R.W., S.W. Nixon, B.A. Buckley, and S.L. Granger Reversal of the net dinitrogen gas flux in coastal marine sediments. Nature 448: Harris, L.A. and M.J. Brush Bridging the gap between empirical and mechanistic models of aquatic primary production with the metabolic theory of ecology: An example from estuarine ecosystems. Ecological Modelling 233: CHRP contribution no. 155.

2 Kremer, J.N., J. Vaudrey, D. Ullman, D. Bergondo, N. LaSota, C. Kincaid, D. Codiga, and M.J. Brush Simulating property exchange in estuarine ecosystem models at ecologically appropriate scales. Ecological Modelling 221: Lake, S.J. and M.J. Brush The contribution of microphytobenthos to total productivity in Narragansett Bay, Rhode Island. Estuarine, Coastal and Shelf Science 95: CHRP contribution no Lake, S.J., M.J. Brush, I.C. Anderson, and H.I. Kator Internal versus external drivers of periodic hypoxia in a coastal plain tributary estuary: the York River, Virginia. Marine Ecology Progress Series 492: Nixon, S. W., R. W. Fulweiler, B. A. Buckley, S. L. Granger, B. L. Nowicki, and K. M. Henry The impact of changing climate on phenology, productivity, and benthic-pelagic- coupling in Narragansett Bay. Estuarine, Coastal and Shelf Science. Featured Article 82: Smith, L.M., Silver, C.M. and Oviatt, C.A Quantifying variation in water column photosynthetic quotient with changing field conditions in Narragansett Bay, RI, USA. Journal of Plankton Research, 34(5): Smith, L.M., Whitehouse, S. and Oviatt, C.A Impacts of Climate Change on Narragansett Bay. Northeastern Naturalist, 17(1): Book chapters Deacutis, C.F Evidence of Ecological Impacts from Excess Nutrients in Upper Narragansett Bay. In Ecosystem Based Management: A Case Study of Narragansett Bay. Springer Series in Environmental Management, eds. A. Desbonnet, and B.A. Costa-Pierce, pp , New York: Springer. Kincaid, C., D. Bergondo and K. Rosenberger, Circulation and exchange between lower Narragansett Bay and Rhode Island Sound, in Ecosystem-based Estuary Management: A Case Study of Narragansett Bay, Springer Publ., ed. A. Desbonet, B. Costa-Pierce, , 2008 Nixon, S.W., B. Buckley, S. Granger, L. Harris, A. Oczkowski, R. Fulweiler, and L. Cole Nitrogen and phosphorus inputs to Narragansett Bay: Past, present, and future. Pp In: B. Costa-Pierce and A. Desbonnet (eds. ) Science for Ecosystem-Based Estuarine Management: Narragansett Bay in the 21st Century. Springer Verlag, NY. Oviatt, C Impacts of Nutrients on Narragansett Bay Productivity: A Gradient Approach. In: A. Desbonnet, B. A. Costa-Pierce (eds). Science for Ecosystem-based Management. Springer, N.Y. p Saarman, E., W. L. Prell, D. Murray and C. F. Deacutis Summer Bottom Water Dissolved Oxygen In Upper Narragansett Bay. In Ecosystem Based Management: A Case Study of Narragansett Bay. Springer Series in Environmental Management, eds. A. Desbonnet, and B.A. Costa-Pierce, pp , New York: Springer.

3 Dissertations and theses Balt, C Subestuarine Circulation and Dispersion in Narragansett Bay. PhD Dissertation. University of Rhode Island. Narragansett, RI. Fulweiler, R. W The impact of climate change on benthic-pelagic coupling and the biogeochemical cycling of Narragansett Bay, R.I. PhD Dissertation, University of Rhode Island, Narragansett, RI. Krumholz, J Spatial and Temporal Patterns in Nutrient Standing Stock and Mass Balance in Response to Load Reductions in a Temperate Estuary Ph.D. Dissertation. University of Rhode Island, Narragansett, RI. Lake, S.J Modeling the formation of periodic hypoxia in partially mixed estuaries and its response to oligotrophication and climate change. Ph.D. dissertation, College of William and Mary, Williamsburg, VA. LaSota, N., Observational and numerical experiments on the flushing of nutrients in the Providence River Estuary, MS Thesis, University of Rhode Island, 186 pages. Pfeiffer-Herbert, A.S Larval Transport in an Estuarine Shelf System: Interaction of Circulation Patterns and Larval Behavior. PhD Dissertation. University of Rhode Island. Narragansett, RI. Rogers, J., Circulation and transport in upper Narragansett Bay, MS Thesis, University of Rhode Island, 95 pages. Smith, Leslie M Impacts of spatial and temporal variation of water column production and respiration on hypoxia in Narragansett Bay. Thesis for Ph.D., University of Rhode Island. Reports, conference proceedings, and other Bergondo, D., and C. Kincaid, Development and calibration of a model for tracking dispersion of waters from Narragansett Bay Commission facilities within the Providence River, Narragansett Bay Commission Final Report, 46 pages, Codiga, D.L., A moving window trigger algorithm to identify and characterize hypoxic events using time series observations, with application to Narragansett Bay. Technical Report Graduate School of Oceanography, University of Rhode Island, Narragansett, RI, 101pp. Melrose, D. C., M. S. Berman, L. M. Smith, C. A. Oviatt The ecological effects of climate change on the Narragansett Bay estuary. ICES CM 2009/(G:07). 20p.

4 Nixon, S. S. and R. W. Fulweiler Nutrient pollution, eutrophication, and the degradation of coastal marine ecosystems. Pp In: C. M. Duarte (ed.) Global Loss of Coastal Habitats: Rates, Causes and Consequences. Fundación BBVA, Bilbao, Spain. Oviatt, C.A Exploring Hypoxia. International Innovation: Vaudrey, J.M.P. (2013) Narragansett Bay EcoGEM Model, 2006; Users Manual v Vaudrey, J.M.P. and J.N. Kremer. (2009) Progress on the Ecological Component of the Hybrid Model: 2009 Annual Report. Vaudrey, J.M.P. and J.N. Kremer. (2008) Working Report on the Narragansett Bay EcoGEM Model v Vaudrey, J.M.P. and J.N. Kremer. (2008) Summary Report of the 2007 Deployment of the Moored Vertical Profilers in Narragansett Bay, Rhode Island and Preliminary Observations on the Synchronicity of Stratification and Destratification Events Vaudrey, J.M.P. and J.N. Kremer. (2008) Progress on the Ecological Component of the Hybrid Model: 2008 Annual Report. Vaudrey, J.M.P. and J.N. Kremer. (2007) Contour Plots of Data from the 2006 Deployment of the Moored Vertical Profilers in Narragansett Bay, Rhode Island Vaudrey, J.M.P. and J.N. Kremer. (2006) Summary Report of the 2006 Deployment of the Moored Vertical Profilers in Narragansett Bay, Rhode Island 2. Submitted and in preparation Brush, M.J. and S.W. Nixon. Submitted. An intermediate complexity, hybrid empirical-mechanistic eutrophication model for shallow marine ecosystems. Fisher, J. and W. Prell, In preparation. Detecting spatial and temporal patterns of chlorophyll seasonality in Narragansett Bay: A multivariate approach. Ganju, N.K., M.J. Brush, B. Rashleigh, A.L. Aretxabaleta, P. del Barrio, M. Forsyth, J.S. Grear, L.A. Harris, S.J. Lake, G. McCardell, J. O Donnell, D.K. Ralston, R.P. Signell, J.M. Testa, and J.M.P. Vaudrey. In preparation. Progress and challenges in coupled hydrodynamic-ecological estuarine modeling. Krumholz, J.S., and C.A. Oviatt, Submitted. Investigating The Impact of Advanced Wastewater Treatment on Nutrient Dynamics In Narragansett Bay, RI. Lake, S.J. and M.J. Brush. In preparation. Modeling the contribution of multiple organic matter sources to the development of periodic hypoxia in a tributary estuary: the York River, Virginia.

5 Lake, S.J. and M.J. Brush. In preparation. Modeling the response to external load reductions in a warmer climate: primary production, net ecosystem metabolism, and hypoxia in the York River Estuary, Virginia. Martin, A., W. Prell, In preparation, Taxonomy and distribution of Benthic Foraminifera in Narragansett Bay. Oviatt, C.A., L. Smith, J. Krumholz, K. Coupland, H. Stoffel, A. Keller, M.C. McManus, and L. Reed. In preparation. Managed Nutrient Reduction Impacts on Nutrient Standing Stock Concentrations, Metabolism and Hypoxia in Narragansett Bay. Pfeiffer-Herbert, A., C. Kincaid, K. Rosenberger, D. Bergondo, In preparation. Dynamics of wind-driven estuarine-shelf exchange: implications for ecosystem processes in the Narragansett Bay estuary. Prell, W., A. Martin, D. Murray, In preparation. Benthic foraminifer faunas as a proxy for mapping the spatial and temporal extent of hypoxia in Narragansett Bay. Rogers, J., C. Kincaid and D. Bergondo. In preparation. Circulation in the heart of Narragansett Bay. Smith, LM, M Schult, CA Oviatt. Submitted. Metabolism, a key driver of hypoxia in Narragansett Bay, Rhode Island. Vaudrey, J.M.P., M.J. Brush, D. Ullman, and J.N. Kremer. In preparation. Development of a hybrid physical-ecological model for predicting the onset of hypoxia in the estuarine waters of Narragansett Bay, RI, USA. Vaudrey, J.M.P. and M.J. Brush. In preparation. Modeling estuarine hypoxia in Narragansett Bay, R.I. with an intermediate-complexity approach. in: Modeling Coastal Hypoxia: Numerical Simulations of Patterns, Controls and Effects of Dissolved Oxygen Dynamics, eds: J. Dubravko, K.A. Rose, R.D. Hetland, K. Fennel. Springer Publishing.