Minimal Residual Disease assessment in Multiple Myeloma by Next-Generation Sequencing

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Minimal Residual Disease assessment in Multiple Myeloma by Next-Generation Sequencing Prof Hervé AVET-LOISEAU, : MD, PhD Institut Universitaire du Cancer Toulouse, France MRD Meta-Analysis in Myeloma Nikhil Munshi, MD Lipper Myeloma Center Dana-Farber Cancer Institute

Why to assess MRD in Myeloma? The main rationale is the correlation response/outcome Cumulative Proportion Surviving 1,0 0,9 0,8 0,7 0,6 0,5 0,4 0,3 0,2 OS RC vs TBRP RC vs RP TBRC vs RP P=0.01 P<10-6 P=0.04 CR, n=278 ncr, n=124 PR, n=280 PD, n=25 Lahuerta et al. JCO 2008 0,1 0 12 24 36 48 60 72 84 96 Months from diagnosis CR ncr PR PD Medians EFS, months 61 40 34 13 Medians OS, months NR NR 61 15

Why to assess MRD in Myeloma? Treatment advances have increased the likelihood of achieving CR.

Why to assess MRD in Myeloma? However, a large majority of pts with CR eventually relapse, suggesting that undetectable, but clinically meaningful MRD may be present.

Why to assess MRD in Myeloma? Diagnosis 10 12 CR 10 10 80% HD trials

MRD: What are the techniques? (Old) Gold Standard: Multiparametric Flow Cytometry Myeloma cells present a specific phenotype / normal PC This phenotype is stable during evolution normal PCs normal PCs PCA2 PCA1 clonal PCs clonal PCs

MRD: What are the techniques? Next-Generation Sequencing Myeloma cells present unique Ig gene rearrangements These clonal rearrangements are stable during evolution

NGS: Technical principles Functional Allèle IgH fonctionnel Allele hypermuté Mix J Locus IGH 14q32 Mix B Mix CMix E Mix J Non-Functional allele Mix D Mix J Locus IGK 2p11

NGS: Technical principles Non B cell Leukocytes Normal B cells Myeloma cells FREQUENCY OF MYELOMA CLONE AMONG B CELLS = S L / (S L + S B ) NUMBER OF MYELOMA MOLECULES PER LEUKOCYTE = S L x (N R /S R ) / N TOT

Is MRD clinically pertinent?

BLOOD, 19 JANUARY 2012 - VOLUME 119, NUMBER 3 BLOOD, 15 MAY 2014 - VOLUME 123, NUMBER 20

Significant Impact of Minimal Residual Disease (MRD) Status On Survival Outcomes In pts (pts) With Multiple Myeloma (MM) Who Achieve Complete Response (CR): A Meta-Analysis A total of 405 published articles with MRD 25 articles recently published articles Of these, 21 reported overall survival (OS) or progression-free survival (PFS) results, as well as MRD status Overall, 2,208 pts were evaluated for MRD Nine publications reported conventional CR at the time of MRD measurement. Six represented unique data sets. Munshi N et al., JAMA Oncol, in press

Refining the literature search Exclusion criteria Publications were excluded if they: Only included patients with relapsed and/or refractory MM Included patients who had undergone allogenic SCT Assessed MRD in apheresis product Reported on the same study population used in an already-included trial Analysis was restricted to techniques with a detection limit of 0.01% MM, multiple myeloma; MRD, minimal residual disease; SCT, stem cell transplant.

Number of patients with PFS and OS data allowing for analysis Patients assessed for PFS 496 1,515 21 articles retrieved in total Any response-achieving patients (n = 13 studies) Patients assessed for OS 496 1,329 CR-achieving patients (n = 4 studies) OS, overall survival; PFS, progression-free survival. 0 500 1,000 1,500 2,000 Number of patients assessed 1. Paiva B, et al. J Clin Oncol. 2011;29:1627-33. 2. Paiva B, et al. Blood. 2012;119:687-91. 3. Rawstron AC, et al. J Clin Oncol. 2013;31:2540-7. 4. Swedin A, et al. Br J Haematol. 1998;103:1145-51. Munshi N et al., JAMA Oncol, in press

The effect of MRD status on PFS and OS (All patients) Munshi N et al., JAMA Oncol, in press

The effect of MRD status on PFS and OS (All patients) Munshi N et al., JAMA Oncol, in press

The effect of MRD status on PFS and OS (CR patients) Munshi N et al., JAMA Oncol, in press

The effect of MRD status on PFS (CR patients) 100 CR-achieving patients 18 PFS (%) 80 60 40 20 0 2 (adjusted) = 35.85; P < 0.0001 0 2 4 6 8 10 12 Time (years) Number at risk by year: 389 359 301 211 155 96 65 35 16 12 1 155 129 86 51 33 19 12 7 7 5 0 Data are adjusted for different proportions of patients being MRD-positive and MRD-negative by study. 3-year PFS: 70% (MRD ) vs. 46% (MRD+) 5-year PFS: 48% (MRD ) vs. 27% (MRD+) MRD-negative (n=389) MRD-positive (n=155) CR patients MRD-negative MRD-positive Median PFS 56 months 34 months Majority of MRD-positive patients progressed by 6 years; nearly 50% of MRD-negative patients progression free Munshi N et al., JAMA Oncol, in press

The effect of MRD status on OS (CR patients) 100 80 CR-achieving patients MRD-negative (n=362) MRD-positive (n=134) 19 OS (%) 60 40 CR patients MRD-negative MRD-positive Median OS 112 months 82 months 20 0 Data are adjusted for different proportions of patients being MRD-positive and MRD-negative by study. CR, complete response; MRD, minimal residual disease; NR, not reached; OS, overall survival. Munshi N, et al. IMW 2015, abstract 0394. 2 (adjusted) = 15.06; P < 0.0001 0 2 4 6 8 10 12 Time (years) Number at risk by year: 362 359 331 274 218 138 76 34 8 3 1 134 131 111 81 55 35 20 10 5 5 2 Median OS was not reached for MRD-negative pts versus 82 months for MRD-positive pts) OS @ 3-years, 94% versus 80% OS @ 7-years, 67% versus 47% OS @ 5-years, 80% versus 61%

Conclusions of the meta-analysis MRD is definitely predictive of both longer PFS and OS Most of the available results are from MFC MFC has a quite low sensitivity (10-4 ) Following question: Would a higher sensitivity have a better predictivity?

Martinez-Lopez J et al., Blood 2014;123:3073 Higher sensitivity: NGS

IFM DFCI 2009 Trial 700 patients < 66y, Newly diagnosed symptomatic MM 3 RVD 5 RVD MEL200 + ASCT 2 RVD MRD* MRD* 12 months Lenalidomide maintenance MRD* MRD* * Primary objective = 7-color Flow, Secondary objective = Molecular

IFM 2009 trial 54% Conventional CR 289 patients analyzed by NGS Applicability of NGS: 92% (8% clone ID failure) Median follow-up: 44 months

IFM 2009 trial MRD at pre-maintenance 1.0 Patients without progression (%) 0.9 0.8 0.7 0.6 0.5 0.4 0.3 0.2 P-value (trend) : p<0.0001 <10-6 [10-6;10-5[ [10-5;10-4[ >=10-4 N at risk (events) <10-6 [10-6 ;10-5 [ [10-5 ;10-4 [ [10-4 ;10-3 [ 0 12 6 18 24 87 (0) 87 (0) 87 (2) 85 (2) 83 (6) 74 (4) 54 (3) 31 (0) 8 31 (0) 31 (1) 30 (2) 28 (0) 27 (4) 22 (1) 17 (2) 8 (1) 4 49 (0) 49 (2) 47 (2) 45 (2) 43 (7) 34 (4) 22 (6) 8 (0) 2 79 (0) 79 (9) 70 (11) 59 (9) 50 (11) 38 (6) 28 (9) 6 (3) 0 30 Months since randomization 36 48 42

IFM 2009 trial MRD at post-maintenance 1.0 Patients without progression (%) 0.9 0.8 0.7 0.6 0.5 0.4 0.3 0.2 P-value (trend) : p<0.0001 <10-6 [10-6;10-5[ [10-5;10-4[ >=10-4 N at risk (events) <10-6 [10-6 ;10-5 [ [10-5 ;10-4 [ [10-4 ;10-3 [ 0 12 6 18 24 86 (0) 86 (0) 86 (0) 86 (0) 86 (5) 77 (3) 61 (5) 36 (0) 10 29 (0) 29 (0) 29 (0) 29 (0) 28 (5) 22 (3) 16 (4) 4 (1) 1 23 (0) 23 (0) 23 (0) 23 (1) 22 (3) 19 (2) 14 (5) 3 (0) 2 40 (0) 40 (0) 40 (0) 40 (6) 33 (9) 23 (6) 15 (4) 4 (1) 2 30 Months since randomization 36 48 42

IFM 2009 trial FCM Negative Patients MRD at pre-maintenance 1.0 Patients without progression (%) 0.9 0.8 0.7 0.6 0.5 0.4 0.3 0.2 0.1 P-value : p<0.0001 Negative (<10-6) Positive 0.0 N at risk (events) MRD neg (<10-6 ) MRD positive 0 12 6 18 24 87 (0) 87 (0) 87 (2) 85 (2) 83 (6) 74 (4) 54 (3) 31 (0) 8 159 (0) 159 (12) 147 (15) 132 (11) 120 (22) 94 (11) 67 (17) 22 (4) 6 30 Months since randomization 36 48 42

MRD at post-maintenance IFM 2009 trial FCM Negative Patients Patients without progression (%) 1.0 0.9 0.8 0.7 0.6 0.5 0.4 0.3 0.2 0.1 0.0 P-value : p<0.0001 Negative (<10-6) Positive N at risk (events) MRD neg (<10-6 ) MRD positive 0 12 6 18 24 86 (0) 86 (0) 86 (0) 86 (0) 86 (5) 77 (3) 61 (5) 36 (0) 10 92 (0) 92 (0) 92 (0) 92 (7) 83 (17) 64 (11) 45 (13) 11 (1) 5 30 Months since randomization 36 48 42

MRD by NGS vs MFC NGS FCM Highly sensitive (> 10-6 ) Standardized Informative in 92% of pts Frozen samples Less sensitive (10-5 ) Many different panels Informative in 100% of pts Fresh samples

Conclusions The highest sensitivity is the most discriminant 10-6 is required NGS is probably the technique of choice MFC should be used in case of clone ID failure MRD could (should?) be the main objective of future trials MRD could identify cured patients

Conclusions Limitations: MRD evaluates MM in one BM region What about other regions? Solutions: cfdna sequencing analyses? ongoing Imaging techniques: PET-TDM+++

Bartel et al. Blood 2009;114:2068-2076

Zamagni et al, Blood 2011;118:5989-5995

IFM 2009 trial PET CT normalisation before maintenance Impact on PFS (62% normalised) 69% 51.6% p < 0.001

Conclusions New concepts in assessment of response in MM IMWG consensus (Kumar S et al., Lancet Oncol, in press) - MRD in BM with the most sensitive technique - PET-TDM