Apply Response Surface Analysis for Interaction of Dose Response Combine Treatment Drug Study

Similar documents
F u = t n+1, t f = 1994, 2005

Elementary tests. proc ttest; title3 'Two-sample t-test: Does consumption depend on Damper Type?'; class damper; var dampin dampout diff ;

Final Exam Spring Bread-and-Butter Edition

Hans Hockey & Kristian Brock Biometrics Matters Ltd, Hamilton, NZ & Cancer Research UK Clinical Trials Unit, Birmingham, UK

Two Way ANOVA. Turkheimer PSYC 771. Page 1 Two-Way ANOVA

BIOSTATISTICAL METHODS

Lecture 2a: Model building I

!! NOTE: SAS Institute Inc., SAS Campus Drive, Cary, NC USA ! NOTE: The SAS System used:!

Problem Points Score USE YOUR TIME WISELY SHOW YOUR WORK TO RECEIVE PARTIAL CREDIT

BIOEQUIVALENCE TRIAL INFORMATION FORM (Medicines and Allied Substances Act [No. 3] of 2013 Part V Section 39)

Computer Handout Two

BIOEQUIVALENCE TRIAL INFORMATION

Read and Describe the SENIC Data

PubH 7470: STATISTICS FOR TRANSLATIONAL & CLINICAL RESEARCH

. *increase the memory or there will problems. set memory 40m (40960k)

Topics in Biostatistics Categorical Data Analysis and Logistic Regression, part 2. B. Rosner, 5/09/17

MCW Office of Research Standard Operating Procedure

BIO 226: Applied Longitudinal Analysis. Homework 2 Solutions Due Thursday, February 21, 2013 [100 points]

Week 3 [16+ Sept.] Class Activities. File: week-03-15sep08.doc/.pdf Directory: \\Muserver2\USERS\B\\baileraj\Classes\sta402\handouts

Balancing the time, cost and risk of drug development. Christina Gustafsson, PhD Pharm, Formulation Scientist at Pharmaceutical Development, APL

The Plan of Enrichment Designs for Dealing with High Placebo Response

Timing Production Runs

Clinical Trials A Closer Look

Soci Statistics for Sociologists

A SAS Macro to Analyze Data From a Matched or Finely Stratified Case-Control Design

COMPOUND MEDICATION NON-FORMULARY (QUALIFIED HEALTH PLANS)

Bios 312 Midterm: Appendix of Results March 1, Race of mother: Coded as 0==black, 1==Asian, 2==White. . table race white

Yoshiaki Uyama,, Ph.D. Office of New Drug III (PMDA)

Psy 420 Midterm 2 Part 2 (Version A) In lab (50 points total)

Compartmental Pharmacokinetic Analysis. Dr Julie Simpson

ECONOMICS AND ECONOMIC METHODS PRELIM EXAM Statistics and Econometrics May 2014

VALIDATION OF ANALYTICAL PROCEDURES: METHODOLOGY *)

Medicines Control Authority Of Zimbabwe

The SAS System 1. RM-ANOVA analysis of sheep data assuming circularity 2

Multiple Imputation and Multiple Regression with SAS and IBM SPSS

Example Analysis with STATA

Guiding dose escalation studies in Phase 1 with unblinded modeling

SAS/STAT 13.1 User s Guide. Introduction to Multivariate Procedures

Example Analysis with STATA

Optimization by RSM of Reinforced Concrete Beam Process Parameters

All Possible Mixed Model Selection - A User-friendly SAS Macro Application

Exploring Functional Forms: NBA Shots. NBA Shots 2011: Success v. Distance. . bcuse nbashots11

Process Characterization Essentials Part I: Process

Measuring Parallelism and Relative Potency In Well-Behaved and Ill-Behaved Cell-Based Bioassays

Introduction to Multivariate Procedures (Book Excerpt)

How to use ANOVA in Qlucore Omics Explorer

GUIDELINE FOR THE STABILITY TESTING

Creative Commons Attribution-NonCommercial-Share Alike License

The Multivariate Regression Model

Shelf Life Determination: The PQRI Stability Shelf Life Working Group Initiative

Clinical trial design issues and options for study of rare diseases

Quadratic Regressions Group Acitivity 2 Business Project Week #4

Model-based Designs in Oncology Dose Finding Studies

Evaluating dose-response under model uncertainty using several nested models

Alternative Trial Designs

Stata Program Notes Biostatistics: A Guide to Design, Analysis, and Discovery Second Edition Chapter 12: Analysis of Variance

You can find the consultant s raw data here:

PROC Report: Various reporting layouts in clinical study reports and Advance Techniques

Facilitating Antibacterial Drug Development: Bayesian vs Frequentist Methods

Validation of Analytical Methods used for the Characterization, Physicochemical and Functional Analysis and of Biopharmaceuticals.

Adaptive Dose Ranging Studies:

29 August Dear Sir/Madam:

Utilities and Pitfalls of Modeling & Simulation in Pivotal Trials

Probability Of Booking

Bayesian Designs for Clinical Trials in Early Drug Development

VICH Topic GL2 (Validation: Methodology) GUIDELINE ON VALIDATION OF ANALYTICAL PROCEDURES: METHODOLOGY

EffTox Users Guide and Tutorial (version 2.9)

Group Sequential Monitoring of Clinical. Trials with Multiple Endpoints. Christopher Jennison, Dept of Mathematical Sciences, University of Bath, UK

What Is Conjoint Analysis? DSC 410/510 Multivariate Statistical Methods. How Is Conjoint Analysis Done? Empirical Example

Regression diagnostics

FREQUENTLY ASKED QUESTIONS

It s About Time! A Primer on Time-Slotting of Data Using SAS Maria Y. Reiss, Wyeth Research, Collegeville, PA

Categorical Variables, Part 2

Bayesian analysis for small sample size trials using informative priors derived from historical data

8. Clinical Trial Assessment Phase II

Adaptive Model-Based Designs in Clinical Drug Development. Vlad Dragalin Global Biostatistics and Programming Wyeth Research

395 South Youngs Road Buffalo, New York cognigencorp.com An On-Site 2-Day Workshop in Engineering The Pharmacometric Enterprise

ESTIMATION OF FORAGE MASS OF OLD WORLD BLUESTEM USING A VISUAL OBSTRUCTION MEASUREMENT TECHNIQUE

EFFICACY OF ROBUST REGRESSION APPLIED TO FRACTIONAL FACTORIAL TREATMENT STRUCTURES MICHAEL MCCANTS

Equivalency Testing: The roles of assay precision, truth, bias, tolerance, risk and control strategy in setting equivalence margins

PharmaSUG 2014 BB18 INTRODUCTION TO SUMMARY LEVEL CLINICAL SITE (SLCS) DATASET

The Role of a Clinical Statistician in Drug Development By: Jackie Reisner

Cleaning and Cleaning Validation of API Plant and Equipment

The evaluation of the full-factorial attraction model performance in brand market share estimation

Management and Accountability of Investigational Medicinal Products in the King s Clinical Research Facility

Proof of Concept Vs Proof of Value

Paper Principal Component Regression as a Countermeasure against Collinearity Chong Ho Yu, Ph.D.

Application: Effects of Job Training Program (Data are the Dehejia and Wahba (1999) version of Lalonde (1986).)

The Construction of a Clinical Trial. Lee Ann Lawson MS ARNP CCRC

A Modeling and Simulation Case Study

Management and Accountability of Investigational Medicinal Products in the King s Clinical Research Facility

Pharmaceutical Application for Stability (PASS) Analysis

The use of model based dose response in choosing doses in a lean clinical development plan. Alun Bedding, PhD

To document the review procedures for a submission regarding compassionate/treatment use of investigational drugs, biologics and devices.

5 th Training Workshop for Micro-, Small- and Medium- Sized Enterprises (SMEs)

ICON MEDICINE FORMULARY PROCESS

GEN-003. Positive Phase 2b Clinical Efficacy Results. Immunotherapy Candidate for Genital Herpes. 12-Month Top-line Results

COMPARING MODEL ESTIMATES: THE LINEAR PROBABILITY MODEL AND LOGISTIC REGRESSION

Predicting user rating on Amazon Video Game Dataset

ECONOMICS AND ECONOMIC METHODS PRELIM EXAM Statistics and Econometrics May 2011

Transcription:

Paper PO13 Apply Response Surface Analysis for Interaction of Dose Response Combine Treatment Drug Study Tung-Yi (Tony) Wu, Ph.D. Kos Pharmaceuticals Inc., Miami, FL ABSTRACT Combination treatments are widely used in medicine. When a clinical trial employs two (or more) drugs and is expensive, a matrix design with response surface analysis become an essential statistical method to obtain an overall profile, a minimum effective dose and/or maximum percentage change from baseline. In this paper, the author will demonstrate one example of a SAS program (using Proc RSREG and Proc G3D) to obtain response surface results. An example of low-cost response surface method design that does not require all possible dose-pair combination is also included. INTRODUCTION Combination drug treatments may involve synergy or antagonism. For the same combination of drugs, we might have both synergistic effects for dose-pairs in some regions and antagonistic effects in different dose-pair regions. Combination-dosages for prescription drugs for humans means that two (or more) drugs may be combined in a single-dosage form such that each component makes a contribution to the claimed effects of the combination and the dosage of each component is such that the combination is safe and effective for a relevant patient population. Such concurrent therapy is defined in the labeling for the drug [21 CFR 300.50]. In order to obtain information for both effectiveness and safety, a matrix study design with response surface analysis is often used for combination drug treatment. Typically all combinations of doses of the two drugs are tested in humans. However, by looking at the expected matrix responses, a smaller design might be found. FIRST EXAMPLE The first example includes two drugs (A and B) and the response variable of Z (percentage change of response variable), obtained from a prior study sample data from environmental science are used to illustrate this method. The percentage change results (variable: Z) of this study were analyzed by estimating the response surface as a function of A and B. Such an analysis yields a response surface with the following overall structure: Z = ß 0 + ß A*A + ß B*B + B A2 *A 2 + ß B2*B 2 + ß AB*A*B

where: Z = percentage change of response variable, % A = A dosage B = B dosage AB = interaction term (combination of A and B) Example of SAS program using Proc RSREG and Proc G3D listed in Appendix I. The response surface analysis of the data was used to identify a percentage change pattern and identify the interaction conditions that can yield a "maximum" percentage change. In Table 1 the response surface analysis are presented (Raymond, 1971). These estimated parameters for the statistics indicated a wellestablished removal pattern which can be described by a response surface model with linear and quadratic terms (see partial F-test and F-test for overall [total] regression results in Table 1 and Appendix II). For this model variable A seems to be the most critical parameter (t-test; in Table 1), whereas the interaction term can be ignored. Canonical analysis of the results yielded negative eigenvalues (i.e. -0.45 and 10.58). This implies the existence of a maximum stationary point. The response surface analysis indicated a pattern which yielded a theoretical maximum percentage change of 88.9% at an A dosage value of 8.56 and B dosage value of 7.51 (i.e., at the stationary point; Figure 2). This finding illustrates the potential use of this procedure to have approximately 89% change of the measure response variable with a recommended A dosage close to 8.5 and, a B dosage above 7. SAS output of the Example I are listed in Appendix II. Table 1 RESPONSE SURFACE ANALYSIS RESULTS Parameters Estimates t-test Prob. ß 0 11.196971 1.57 0.120 ß A 13.199672 7.12 <0.001 ß B 5.64681 1.19 0.236 ß A2-0.657330-3.79 <0.001 Partial F-Ratio test (Prob.) 150.91 (<0.0001) 7.44 (0.0010) ß B2-0.228770-0.26 0.797 ß AB -0.258904-0.77 0.446 0.59 (0.4456) R 2 = 0.77, F-value = 63.46 [total regression], Prob. = <0.0001

Figure 1: The Response Surface Plot Figure 2: The Contour Plot

SECOND EXAMPLE The second example is an on going project, data are not available at this time; however, the study design is as follows: Study design: double-blind, parallel-group, muti-center, ten dose-pairs, escalating study design Study drug A dose: Low, Medium, Medium-High, High Study drug B dose: Low, High Combination of A and B: Low, Medium, Medium-High, High Study drug Placebo: Active Placebo Table 2 shows the study design of a possible efficient response surface clinical study design. This low-cost alternative response surface method design does not requires all possible dose-pair combinations. The partial matrix design of the response surface becomes a cost-effectiveness strategy for clinical studies. Table 2: Example of low-cost response surface method design STUDY DRUG Placebo (B) Low (B) Medium (B) High( B) Placebo(A) X X X Low(A) Medium(A) X X X Medium-High(A) X High (A) X X X CONCLUSIONS In the first example, the response surface design included all possible dosepairs; however, in the pharmaceutical industry the clinical trials are very expensive. Study designs become very important. Any additional dose-pairs will significantly increase the study cost. In the second example, the study design does not include all possible dose-pairs. The matrix design of response surface analysis using Proc RSREG and Proc G3D will be a cost-effectiveness method for statistical analysis. There are some limitations of this method of designing a partial matrix study. Prior data are needed. The example here benefited by having such data. However, other ways of getting prior information might include literature review, pilot study, or expectations for response for which this method might be generalized.

REFERENCE 1. Raymond H. Myers: Response Surface Methodology, 1971. 2. SAS: SAS System for Regression, Cary, NC, SAS Institute, Inc. 3. SAS: SAS/GRAPH Software, version 6, Cary, NC, SAS Institute, Inc. 4. SAS: User s Guide, Cary, NC, SAS Institute, Inc. 5. Theodore Allen et al, Low-Cost Response Surface Methods From Simulation Optimization, Quality Reliability Engineering International 2002; 18:5-17 TRADEMARKS SAS is a registered trademark of SAS Institute Inc., in the USA and other countries. ACKNOWLEDGMENTS I would like to thanks Phillip Simmons and Caroline Malott for their review and provided great comments. CONTACT INFORMATION Your comments and questions are valued and encouraged. Contact the author at: Author Name: Tung-Yi (Tony) Wu Company KOS Pharmaceuticals Address: 2200 N. Commerce Parkway (suite 300), Weston, FL. 33326 Work phone: (954) 331-3499 Fax: (954) 331-3882 Email: twu@kospharm.com

APPENDIX I : THE RSREG EXAMPLE ******************************************************************* Program Name: rsreg1.sas Programmed by: Tony Wu Software: SAS 8 *******************************************************************; dm output 'clear;log;zoom off;clear'; libname SUG04 'c:\working_file\'; data PO13; set SUG04.po13; proc sort ; by dosagea dosagea; RUN; Proc rsreg data=po13 out=pr123; model pctchange=dosagea dosageb/lackfit predict residual; ridge max; data grid; do dosagea=1 to 10 by 0.2; do dosageb = 1 to 8 by 0.2; output; data PO13; set po13 grid; dosagea2=dosagea**2; dosageb2=dosageb**2; dosageab=dosagea*dosageb; proc reg data=po13; model pctchange=dosagea dosageb dosagea2 dosageb2 dosageab; output out=results p=yhat r=residual rstudent=rstudent h=hatvalue; id obs; data fit; set results; if pctchange=.; pctchange=yhat; proc g3d data=fit; plot dosagea*dosageb=pctchange / grid caxis=blue xticknum=7 yticknum=9 zticknum=6;;

*=== PLOT RESPONSE SURFACE BASE ON Proc RSREG results ===; data abc; a= 11.19692; b= 13.19967; c= 5.65468; d= -0.65733; e= -0.20877; f= -0.25890; do dosagea=1 to 10 by 0.5; do dosageb=1 to 8 by 0.5; output; output; data abcz; set abc ; do pctchange= a + b*dosagea + c*dosageb + d*dosagea*dosagea + e*dosageb*dosageb + f*dosagea*dosageb; output; proc g3d data=abcz; plot dosagea*dosageb=pctchange/ grid caxis=blue xticknum=8 yticknum=10 zticknum=10; format dosagea dosageb pct_change 5.0 ; proc gcontour data=abcz; plot dosagea*dosageb=pctchange / XTICKNUM=11 yticknum=8 levels= 90 88 85 80 75 70 ; proc g3grid data=abcz out=gridnums; grid dosagea*dosageb=pctchange / spline smooth=0.05 axis1=1 to 10 by.25 axis2=1 to 8 by.25; run ; proc g3d data=gridnums ; plot dosagea*dosageb=pctchange / grid caxis=black xticknum=8 yticknum=10 zticknum=10; ******************************************************************** End of program. ********************************************************************;

APPENDIX II : THE RSREG EXAMPLE OUTPUT The RSREG Procedure Coding Coefficients for the Independent Variables Factor Subtracted off Divided by dosagea 4.500000 4.000000 dosageb 2.500000 1.500000 Response Surface for Variable pctchange Response Mean 65.317475 Root MSE 8.808467 R-Square 0.7733 Coefficient of Variation 13.4856 Type I Sum Regression DF of Squares R-Square F Value Pr > F Linear 2 23418 0.7356 150.91 <.0001 Quadratic 2 1154.460169 0.0363 7.44 0.0010 Crossproduct 1 45.523211 0.0014 0.59 0.4456 Total Model 5 24618 0.7733 63.46 <.0001 Sum of Residual DF Squares Mean Square F Value Pr > F Lack of Fit 29 3224.715069 111.197071 1.78 0.0279 Pure Error 64 3991.070000 62.360469 Total Error 93 7215.785069 77.589087 Parameter Estimate from Coded Parameter DF Estimate STD Error t Value Pr > t Data Intercept 1 11.196917 7.132636 1.57 0.1199 67.078727 dosagea 1 13.199672 1.854258 7.12 <.0001 26.545761 dosageb 1 5.654681 4.743323 1.19 0.2362 5.018648 dosagea*dosagea 1-0.657330 0.173213-3.79 0.0003-10.517285 dosageb*dosagea 1-0.258904 0.338004-0.77 0.4456-1.553422 dosageb*dosageb 1-0.228770 0.886228-0.26 0.7969-0.514732 Sum of Factor DF Squares Mean Square F Value Pr > F dosagea 3 22954 7651.192435 98.61 <.0001 dosageb 3 1340.178660 446.726220 5.76 0.0012 The RSREG Procedure Canonical Analysis of Response Surface Based on Coded Data Critical Value Factor Coded Uncoded dosagea 1.015104 8.560415 dosageb 3.343257 7.514886 Predicted value at stationary point: 88.941394 Eigenvectors Eigenvalues dosagea dosageb -0.454779-0.076960 0.997034-10.577238 0.997034 0.076960