These vectors are primarily designed for high level protein expression in transiently transfected cells. Your Gene GGT CHYSEL_TAV SV40-NT NLS ATG

Similar documents
These vectors are primarily designed for high level protein expression in transiently transfected cells. Your Gene GGT ATG

Your Gene GGT Term_T7 ATG. Protease Cleavage Site. Name Affinity Tag Protease Cleavage Site Qty Storage. pd454-fh8 FH8 PCS_TEV 10Rx -20

IP-Free Electra DAUGHTER Vectors Mammalian with CMV promoter

pdsipher and pdsipher -GFP shrna Vector User s Guide

Heterologous protein expression systems

AP Biology Gene Expression/Biotechnology REVIEW

Green Fluorescent Protein (GFP) Purification. Hydrophobic Interaction Chromatography

CHAPTER 20 DNA TECHNOLOGY AND GENOMICS. Section A: DNA Cloning

Lecture 25 (11/15/17)

Transfection of CRISPR/Cas9 Nuclease NLS ribonucleoprotein (RNP) into adherent mammalian cells using Lipofectamine RNAiMAX

BIOLOGY LTF DIAGNOSTIC TEST DNA to PROTEIN & BIOTECHNOLOGY

Pre-made Lentiviral Particles for Nuclear Permeant CRE Recombinase Expression

CHAPTER 9 DNA Technologies

Chapter 18: Regulation of Gene Expression. 1. Gene Regulation in Bacteria 2. Gene Regulation in Eukaryotes 3. Gene Regulation & Cancer

Chem 465 Biochemistry II

XactEdit Cas9 Nuclease with NLS User Manual

CHAPTER 13 LECTURE SLIDES

7.1 The lac Operon 7-1

DNA Structure and Properties Basic Properties Predicting Melting Temperature. Dinesh Yadav

Chapter 31. Transcription and RNA processing

DNA Transcription. Visualizing Transcription. The Transcription Process

Transcription in Eukaryotes

Prokaryotic Transcription

Fig Ch 17: From Gene to Protein

Biology 201 (Genetics) Exam #3 120 points 20 November Read the question carefully before answering. Think before you write.

An innovative multigenic plasmid for high levels of expression of the GFP and LacZ reporter genes Catalog # pvitro2-gfplacz

TransIT -mrna Transfection Kit

GENE REGULATION IN PROKARYOTES

Computational Biology I LSM5191 (2003/4)

DNA Transcription. Dr Aliwaini

Gene Regulation in Eukaryotes

Pre-made Lentiviral Particles for nuclear permeant CRE recombinase expression

Lecture Four. Molecular Approaches I: Nucleic Acids

REGULATION OF GENE EXPRESSION

pvivo1-gfp/lacz An innovative multigenic plasmid for high levels of expression of the GFP and LacZ reporter genes in tumors Catalog # pvivo1-gfp-lacz

Problem Set 8. Answer Key

DNA makes RNA makes Proteins. The Central Dogma

Cloning in bacteria. Presenter: Vito Baraka (BSc,MSc Cand.)

Zool 3200: Cell Biology Exam 2 2/20/15

Review of Protein (one or more polypeptide) A polypeptide is a long chain of..

Color-Switch CRE recombinase stable cell line

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity

Multiple choice questions (numbers in brackets indicate the number of correct answers)

Cignal Reporter Assay Handbook

CRE/CREB Reporter Assay Kit camp/pka Cell Signaling Pathway Catalog #: 60611

Certificate of Analysis

Nucleic acids deoxyribonucleic acid (DNA) ribonucleic acid (RNA) nucleotide

Prokaryotic Transcription

Protein Synthesis. Presented by Dr. Mohammad Saadeh The requirements for the Pharmaceutical Biochemistry I Philadelphia University Faculty of pharmacy

M I C R O B I O L O G Y WITH DISEASES BY TAXONOMY, THIRD EDITION

GENE REGULATION slide shows by Kim Foglia modified Slides with blue edges are Kim s

3 Designing Primers for Site-Directed Mutagenesis

Regulation of gene expression. (Lehninger pg )

TRANSCRIPTION AND PROCESSING OF RNA

MIT Department of Biology 7.013: Introductory Biology - Spring 2005 Instructors: Professor Hazel Sive, Professor Tyler Jacks, Dr.

2054, Chap. 14, page 1

CHAPTER 17 FROM GENE TO PROTEIN. Section C: The Synthesis of Protein

BIOLOGY. Chapter 16 GenesExpression

Transcription in Prokaryotes. Jörg Bungert, PhD Phone:

Lecture 9 Controlling gene expression

RNA and Protein Synthesis

Chapter 11: Regulation of Gene Expression

Name: Class: Date: ID: A

GeNei TM Transformation Teaching Kit Manual

Transcription Eukaryotic Cells

Materials and methods. by University of Washington Yeast Resource Center) from several promoters, including

phcmv Expression Vectors Instruction Manual

Bio 101 Sample questions: Chapter 10

Ch. 10 Notes DNA: Transcription and Translation

Self-test Quiz for Chapter 12 (From DNA to Protein: Genotype to Phenotype)

TrueORF TM cdna Clones and PrecisionShuttle TM Vector System

Chapter 8 DNA Recognition in Prokaryotes by Helix-Turn-Helix Motifs

HiPer Plasmid DNA Cloning Teaching Kit

BEADLE & TATUM EXPERIMENT

RNA : functional role

Improving CRISPR-Cas9 Gene Knockout with a Validated Guide RNA Algorithm

Themes: RNA and RNA Processing. Messenger RNA (mrna) What is a gene? RNA is very versatile! RNA-RNA interactions are very important!

Gene Expression Transcription/Translation Protein Synthesis

number Done by Corrected by Doctor Hamed Al Zoubi

Convoy TM Transfection Reagent

From Gene to Protein transcription, messenger RNA (mrna) translation, RNA processing triplet code, template strand, codons,

sirna Transfection Into Primary Neurons Using Fuse-It-siRNA

TurboFect in vitro Transfection Reagent. Description. Storage. Reagents to be Supplied by the User. #R ml ( for in vitro transfections)

Cat # Box1 Box2. DH5a Competent E. coli cells CCK-20 (20 rxns) 40 µl 40 µl 50 µl x 20 tubes. Choo-Choo Cloning TM Enzyme Mix

1. What is the structure and function of DNA? Describe in words or a drawing the structure of a DNA molecule. Be as detailed as possible.

pdual Expression Vector

Solutions to Quiz II

Introducing new DNA into the genome requires cloning the donor sequence, delivery of the cloned DNA into the cell, and integration into the genome.

Summary of Mutagenic Toxicity Test Results for EvaGreen

Learning Objectives :

User s Guide MegaTran 1.0 Transfection Reagent

Protocols for cloning SEC-based repair templates using SapTrap assembly

Avalanche -Omni Transfection Reagent

EcoR1 is a type IIP restriction endonuclease which cleaves the palindromic

Molecular Cell Biology - Problem Drill 11: Recombinant DNA

The Regulation of Bacterial Gene Expression

NAME TA SEC Problem Set 3 FRIDAY March 5, Problem sets will NOT be accepted late.

Chapter 10: Gene Expression and Regulation

pbluescript II RI Predigested Vector

Mammalian Optimized GFP Strand 11 Plasmid Product Number RESEARCH PRODUCT INSERT

Transcription:

Mammalian Expression Vectors has mammalian expression vectors suitable for transient or stable expression. These vectors are available with features including various promoters, markers, and fusions. Mammalian Transient Expression Vectors These vectors are primarily designed for high level protein expression in transiently transfected cells. Mammalian Transient Expression Vectors: CMV Promoter Vectors are available for fusion of your ORF to fluorescent proteins or localization signals. Vectors are also available with IRES or CHYSEL sequences for translational coupling of your ORF and a fluorescent protein to provide expression monitoring. Some vectors contain mammalian selectable markers for generating stable cell lines, though this is much more efficient with our Stable Expression Vectors. Plasmid Map P_CMV_IE1_Hs P_T7 ATG Your Gene GGT CHYSEL_TAV SV40-NT NLS E_CMV_IE1_Hs 1 5000 CometGFP-C152Y LacO1 Term_bla 500 pa_gh-bt(min) 4500 Term_rpoC 4000 pd668-ac CMV-ORF-2A-GFP, Mamm-E... 5380 bp 1000 1500 E_SV40 P_SV40E Ori_SV40 Ori_pUC 3500 2000 P_EM7 3000 2500 M_Blasticidin-r_* M_Ampicillin-r_* pa_sv40e P_Amp Name Qty Storage pd668-ac 10Rx -20

Standard Transfection Protocol 1. 24 hours before transfection seed cells (in antibiotic free media) to be 70-90% Confluent at time of transfection. (6 well plate: 0.25-1.0x10 6, 24 well plate: 0.5-2.0x10 5, 96 well plate: 1-4x10 4 ) 2. *Dilute Lipofectamine in DMEM or Opti-MEM (LifeTech) 3. *Dilute DNA (endotoxin free is optimal) in DMEM or Opti-MEM (LifeTech) 4. Add diluted DNA mixture to diluted Lipofectamine mixture. 5. Incubate for 10 minutes. 6. Add DNA-Lipid complex to cells 7. Visualize cells using microscope and analyze. *At we typically use a 1:1 ratio of DNA:Lipofectamine Mammalian Expression Vector Controls 's mammalian expression vectors are available with Protein Paintbox genes to serve as controls. In addition, any mammalian-optimized Paintbox Protein gene in an Electra MOTHER vector can be cloned into any Electra DAUGHTER vector.

Electra Cloning System Electra is a simple one-tube universal cloning process that can be performed in a 5 minute bench-top reaction with the fidelity of a restrictionbased cloning system. A gene from one MOTHER vector is compatible with all DAUGHTER vectors, allowing rapid testing of many different sequence contexts simultaneously. Reagents The Electra Reagents kit contains all necessary components to facilitate cloning a gene from a MOTHER into a DAUGHTER vector. The Electra reaction can also be used to clone a PCR product into either a MOTHER or a DAUGHTER vector. Electra Buffer Mix is supplied at 10X final concentration (use 2 µl in a 20 µl reaction) Electra Enzyme Mix is supplied at 20X final concentration (use 1 µl in a 20 µl reaction) Cloning Protocol Component Volume (µl) MOTHER DNA / Positive control (20 ng) 1 DAUGHTER Vector (20 ng) 1 Electra Buffer (10x) 2 Electra Enzyme (20x) 1 Water 15 Total 20 1. Combine components and incubate at 25-37 C for 5-20 minutes. 2. Transform 1-2 µl into chemically competent E. coli. (DH10B cells recommended) 3. Recover cells for 45 minutes and then plate on appropriate antibiotic for the DAUGHTER. 3a. Optionally include streptomycin at 100 µg/ml (for selection against pmother with rpsl); or plate on YEG with antibiotic plus p-chloro phenylalanine at 10mM (for selection against pmother with phes). Positive Control A positive control MOTHER vector carries a gene in which Ptet drives expression of green fluorescent protein (DasherGFP). A successful Electra reaction will produce green fluorescent colonies from the DAUGHTER vector. Electra DAUGHTER Vectors Electra DAUGHTER vectors are supplied as linearized DNA, with overhangs compatible with an ATG (encoding methionine) at the 5' end and GGT (encoding glycine) at the 3' end.

Electra MOTHER Vectors Genes in MOTHER vectors have adjacent restriction sites that produce overhangs compatible with an ATG at the 5' end and GGT at the 3' end upon digestion with SapI. Alternatively Electra ends can be added to any gene* by PCR. We recommend you add the following ends to your PCR primers: 5'-TACACGTACTTAGTCGCTGAAGCTCTTCTATG...(ORF)...-3' 5'-TAGGTACGAACTCGATTGACGGCTCTTCTACC...(ORF Reverse Complement)...-3' *Your gene must not contain any internal SapI recognition sites, since the Electra cloning process utilizes the typeiis enzyme SapI. MOTHER vectors also contain a counter-selection gene. This can be used to eliminate any residual gene propagating in the MOTHER.

Feature list descriptions Ampicillin-r Blasticidin-r CHYSEL_TAV CometGFP-C152Y E_CMV_IE1_Hs E_SV40 LacO1 NLS Ori_pUC P_CMV_IE1_Hs P_EM7 P_SV40E pa_gh-bt(min) pa_sv40e A semi-synthetic penicillin derived from 6-amino-penicillanic acid causes cell death by inhibiting cell wall biosynthesis. The gene coding for ampicillin resistance (bla) is a beta lactamase which is secreted into the periplasmic space where it catalyzes hydrolysis of the beta-lactam ring of ampicillin. E.coli transformed with plasmid containing the ampicillin resistance gene can grow on media containing 50-100 µg/ml ampicillin. (www.jac.oxfordjournals.org/content/43/5/699.full) Blasticidin is a peptidyl nucleoside antibiotic that inhibits protein synthesis by interfering with the peptide bond formation in the ribosomal machinery. Resistance to blasticidin is conferred by the blasticidin resistance gene from Bacillus cereus (bsr) which codes for blasticidin S- deaminase. Cell death induced by blasticidin is rapid and cell lines carrying a blasticidin resistance gene can be obtained in less than a week. Typically, mammalian cells are sensitive to blasticidin concentrations of 1-10 µg/ml, and bacteria to 25-100 µg/ml. (www.ncbi.nlm.nih.gov/ pubmed/1720391) The TAV CHYSEL (cis-acting hydrolase element) or 2A peptide was found in the insect Thosea asigna virus (TaV). Multiple proteins can be efficiently produced from one coded peptide by a mechanism that relies on the self-cleaving 2A peptide sequence which allows for translational 'skipping'. The 2A peptide mediates the co-translational cleavage of a polyprotein. After cleavage, the short 2A peptide remains fused to the C- terminus of the 'upstream' protein, while a proline is added to the N-terminus of the 'downstream' protein. (www.plosone.org/article/info%3adoi %2F10.1371%2Fjournal.pone.0018556) IP-Free green fluorescent reporter protein that is used as a selectable marker for expression monitoring of your protein. Ex/Em: 400/515 nm. The cytomegalovirus (CMV) enhancer element plays a critical role in overcoming inefficient transcriptional activities of promoters, thereby enhancing transcription. The hcmv IE1 enhancer/promoter is one of the strongest enhancer/promoters known and is active in a wide range of cell types. (www.link.springer.com/article/10.1007%2fs11248-008-9235-y) The enhancer element from simian virus 40 (SV40) plays a critical role in overcoming inefficient transcriptional activities of promoters, thereby enhancing transcription. (www.sciencedirect.com/science/article/pii/1044577393800037) LacO is a regulatory gene of the lac operon. If lactose is missing from the growth medium, the repressor binds very tightly to a short DNA sequence just downstream of the promoter near the beginning of lacz called the lac operator. The repressor binding to the operator interferes with binding of RNAP to the promoter, and therefore transcription occurs only at very low levels. When cells are grown in the presence of lactose, however, a lactose metabolite called allolactose, which is a combination of glucose and galactose, binds to the repressor, causing a change in its shape. Thus altered, the repressor is unable to bind to the operator, allowing RNAP to transcribe and thereby leading to higher levels of the encoded proteins. Silencing of the promoter prior to IPTG induction is achieved using symmetrical lac operators (Proc Natl Acad Sci USA 1983. 80:6785. Sadler et al) spaced around the promoter to maximize cooperativity (EMBO J 1994. 13:3348. Oehler et al). This operator pair ensures significantly tighter repression than regular lac operators. Overlapping T5 promoter/lac operator has been described (Proc Natl Acad Sci USA 1988. 85:8973. Lanzer and Bujard ). (www.ncbi.nlm.nih.gov/pubmed/6316325) A nuclear localization signal (NLS) is an amino acid sequence that 'tags' a protein for import into the cell nucleus by nuclear transport. Typically, this signal consists of one or more short sequences of positively charged lysines or arginines exposed on the protein surface. Chelsky et al. proposed the consensus sequence K-K/R-X-K/R for monopartite NLSs. A protein translated with a NLS will bind strongly to importin, and together the complex will move through the nuclear pore. Once in the nucleus, Ran-GTP binds to the importin-protein complex, causing importin to lose affinity for the protein, thereby releasing the protein. (www.jbc.org/content/282/8/5101.full) The origin of replication is a sequence in a genome at which replication is initiated. The puc ori is a mutated form of origin derived from E. coli plasmid pbr322 which allows production of greater than 500 copies of plasmid per cell. (www.en.wikipedia.org/wiki/origin_of_replication) The CMV promoter is a constitutive mammalian promoter and mediates strong expression in various cellular systems. We have seen strong expression in HEK 293 and CHO cells. CMV mediates strong Cas9 transient expression compared to CAG or CBh promoters. CMV promoter mediated only transient expression in hescs. CMV promoters have been reported to be prone to 'silencing' in some cell lines. (www.plosone.org/ article/info%3adoi%2f10.1371%2fjournal.pone.0010611) The EM7 promoter is a synthetic bacterial promoter derived from the T7 promoter that enables the constitutive expression of the antibiotic resistance gene in E.coli. (www.google.com/patents/us7244609) The SV40 early promoter is a weak promoter from Simian Virus 40 (SV40) compared to the CMV promoter. The SV40 promoter works well in most cells but performs best in cell lines containing the stably integrated SV40 large T antigen, such as the African green monkey kidney COS cell lines. (www.ncbi.nlm.nih.gov/pubmed/6313230) The bovine growth hormone polyadenylation (bgh-polya) signal is a specialized termination sequence for protein expression in eukaryotic cells. (www.ncbi.nlm.nih.gov/pubmed/17407167) The simian virus 40 early polyadenylation signal is an RNA element which promotes efficient polyadenylation resulting in high levels of steadystate mrna. A poly(a) tail is added to an RNA at the end of transcription and protects the mrna molecule from enzymatic degradation in the cytoplasm and aids in transcription termination, export of mrna from the nucleus and translation. (www.ncbi.nlm.nih.gov/pubmed/2836265)