Electronic Supplementary Informations

Similar documents
LDH-Cytotoxicity Assay Kit II

OPPF-UK Standard Protocols: Mammalian Expression

EZ-10 SPIN COLUMN GENOMIC DNA MINIPREPS KIT HANDBOOK

Supporting Information. Low temperature synthesis of silicon carbide nanomaterials using


Plasmid DNA transfection of SW480 human colorectal cancer cells with the Biontex K2 Transfection System

Propagation of H7 hesc From: UW (John Stamatoyannopoulos) ENCODE group Date: 12/17/2009 Prepared By: S. Paige/S. Hansen (UW)

Enzyme-mediated preparation of hydrogels composed of poly(ethylene glycol) and gelatin as cell culture platforms

CytoPainter Golgi Staining Kit Green Fluorescence

Supporting information

Purification of cytoplasmic RNA from animal cells using the RNeasy Mini Kit

Preparation for 3D cell culture on Alvetex Scaffold. 1. 3T3 cells were routinely maintained in T-75 flasks.

A prospective cancer chemo-immunotherapy approach mediated by synergistic CD326 targeted porous silicon nanovectors

The preparation of native chromatin from cultured human cells.

LHCN-M2 cell culture, differentiation treatment, and cross-linking protocol.

Active targeting of the nucleus using non-peptidic boronate tags

MitoBiogenesis In-Cell ELISA Kit (Colorimetric)

Supplementary Material (ESI) for Chemical Communications This journal is (c) The Royal Society of Chemistry 2009

ab CytoPainter ER Staining Kit Red Fluorescence

DeliverX and DeliverX Plus sirna Transfection Kits

Human Pluripotent Stem Cell Functional Identification Kit

Tissue & Cell Genomic DNA Purification Kit. Cat. #:DP021/ DP Size:50/150 reactions Store at RT For research use only

Preparation of cerium oxide nanoparticles (CNPs). Preparations of CNPs produced

Combined Digoxigenin-labeled in situ hybridization/ Immunohistochemistry protocol (for fixed frozen cryostat sections)

FOR RESEARCH USE ONLY. NOT FOR HUMAN OR DIAGNOSTIC USE.

Standard Operating Procedure

Supplementary Information

For identifying inhibitors and activators of mitochondrial biogenesis in adherent cultured cells.

Immunofluorescence Staining Protocol for 3 Well Chamber, removable

LacZ beta Galactosidase Intracellular Detection Kit

Protocols for Neural Progenitor Cell Expansion and Dopaminergic Neuron Differentiation

Supporting Information

Gel Extraction & PCR Purification Combo Kit (Spin-column)

E.Z.N.A. MicroElute Genomic DNA Kit. D preps D preps D preps

Alt-R CRISPR-Cpf1 System:

Catalytic Effect of Solvent Vapors on the Spontaneous Formation of Caffeine-Malonic Acid Co-Crystal

This Document Contains:

Investigation of Cell Migration using a High Density Cell Exclusion Assay and Automated Microplate Imager

Supplementary information for. An Ultrasensitive Biosensor for DNA Detection Based on. Hybridization Chain Reaction Coupled with the Efficient

PROCEDURE FOR USE NICKEL NTA Magnetic Agarose Beads (5%)

Cells and Tissue DNA Isolation Kit (Magnetic Bead System) 50 Preps Product # 59100

In Situ Hybridization

Assessment of nanoparticles safety: corrected absorbance-based toxicity test

Photon Upconversion Sensitized Nanoprobes for

Developing a real-time fluorescence cell growth monitoring system

Elecrtonic Supplementary Information. Application of quantum dot barcodes prepared using biological self-assembly to multiplexed immunoassays

Accurate and Automated cell confluence assessment in microplates

ProductInformation. Genomic DNA Isolation Kit. Product No. GDI-3 Technical Bulletin No. MB-275 May 2000 TECHNICAL BULLETIN

HiPer Gel Extraction Teaching Kit (Column Based)

Calcein AM Cell Viability Kit

Kit Components Product # (50 samples) Wash Solution A Elution Buffer B

AC Plant Keratin PF Efficacy Data

Cells and Tissue DNA Isolation 96-Well Kit (Magnetic Bead System) Product # 62500

Human Adult Mammary Fibroblast Care Manual

DNA Extraction Kit INSTRUCTION MANUAL. Catalog # Revision A. For In Vitro Use Only

Whole Mount IHC Protocol

Note: for laboratory research use only. RNA High-purity Total RNA Rapid Extraction Kit (Spin-column) Signalway Biotechnology

T ECHNICAL MANUAL. Culture of Human Mesenchymal Stem Cells Using MesenCult -XF Medium

EZ-10 SPIN COLUMN GENOMIC DNA MINIPREPS KIT HANDBOOK

DNA Extraction Kit INSTRUCTION MANUAL. Catalog # Revision B. For In Vitro Use Only

AmpliScribe T7-Flash Transcription Kit

Supplementary Information:

Note that Methylene Blue-stained cultures may require an additional washing step if the second wash is still very blue in appearance.

HEPARIN CALCIUM. Heparinum calcicum

Gunasekar Ramachandran a, Natesan Sundaramoorthy Karthikeyan a, b, Periyasamy Giridharan c, Kulathu Iyer Sathiyanarayanan a *

Electronic Supplementary Information (ESI) for. In vivo Two-photon Fluorescent Imaging of Fluoride with a Desilylationbased Reactive Probe

Cellular Fractionation

Low cost and non-toxic genomic DNA extraction for use in molecular marker studies.

Polyvidone Polyvinylpyrrolidone H 2 C H C N

Creating RAFT 3D Cell Cultures with Different Thicknesses and Different Cell Types

VDL106.3 LARGE-SCALE AMPLIFICATION AND PURIFICATION OF ADENOVIRAL VECTOR

Before You Begin. Calibration Protocols

RayBio Apoptotic DNA Ladder Extraction Kit

Myers Lab ChIP-seq Protocol v Modified January 10, 2014

Microarray Protocol for Agilent Inkjet-Deposited Presynthesized Oligo Arrays Aminoallyl Method AfCS Procedure Protocol PP Version 1, 10/20/03

THE INSTITUTE FOR GENOMIC RESEARCH Standard Operating Procedure SOP #: M004 REVISION LEVEL:.3 EFFECTIVE DATE: 9/16/03

Nanobody Library Selection by MACS

Investigation of cellular uptake mechanisms by correlative TEM and SIM

In Vitro Monitoring of the Formation of Pentamers from the Monomer of GST Fused HPV 16 L1

Enumeration, Phenotyping, and Identification of Activation Events in Conjugates Between T Cells and Antigen-Presenting Cells by Flow Cytometry

Cortical Neural Induction Kit. Protocol version 1.0

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Protocol for induction of expression and cell lysate production

HiMesoXL TM Mesenchymal Stem Cell Expansion Medium

Cytotoxicity LDH Assay Kit-WST

Protocols for Hematopoietic Differentiation of Murine ES Cells (in 6 or 24 well plates) Media Preparation

M13 Based Phage Scaffold Prep

Pinpoint Slide DNA Isolation System Catalog No. D3001

CAPZ PREPARATION BY BACTERIAL EXPRESSION (LYSIS BY DETERGENT, NOT SONICATION.) Soeno, Y. et al., J Mus. Res. Cell Motility 19:

Enzyme-encapsulated microreactor for efficient theanine synthesis

Supplementary File 3: DNA and RNA isolation

HepG2 Labeling and Cell Growth Protocol for IROA Phenotypic Metabolic Profiling

Colorimetric detection of influenza A (H1N1) virus based on peptide functionalized polydiacetylene (PEP-PDA) nanosensor

ab CytoPainter Mitochondrial Staining Kit NIR Fluorescence

In vitro Human Umbilical Vein Endothelial Cells (HUVEC) Tube-formation Assay. Josephine MY Ko and Maria Li Lung *

Cell Migration, Chemotaxis and Invasion Assay Using Staining

Methodology for Immunohistochemistry. Learning Objectives:

3D Mammary Colony-Forming Cell Assay Giusy Tornillo 1* and Sara Cabodi 2

PureLink Plant Total DNA Purification Kit

Transcription:

Introduction of disulfide bridges within silica nanoparticles to control their intra- cellular degradation S. Quignard, S. Masse, G. Laurent and T. Coradin Electronic Supplementary Informations ESI-1 : Detailed experimental protocols ESI-2 : TEM images of x%ss nanoparticles (scale bar = 100nm) and corresponding size distribution ESI-3 (a) { 1 H}- 13 C and (b) { 1 H}- 29 Si HETCOR ssnmr spectra of 30%SS without APTES ESI-4 : Dissolution of x%ss particles at ph 7.4 and 37 C ESI-5 : Fluorescence optical imaging of human dermal fibroblast cells after 24 h (left- hand column) and 7 days (right- hand column) contact with x%ss nanoparticles. WGA- AlexaFluor555 and Lysosensor yellow- blue were used for red staining of the membrane and blue staining of the endosomes, respectively. Green fluorescence corresponds to FITC. ESI-6 : TEM images of x%ss silica nanoparticles after 7 days of contact with HDFa (left hand column scale bar = 1 mm ; right hand column scale bar = 100 nm) ESI-7 : TEM images of x%ss silica nanoparticles with HDFa after 7 days of contact followed by washing and further 7 days in culture (left hand column scale bar = 1 mm ; right hand column scale bar = 100 nm) ESI-8 : Cytotoxicity of x%ss silica nanoparticles as monitored by the Alamar blue test 1

ESI-1 : Detailed experimental protocols Synthesis of x%ss particles: x%ss particles were synthesised based on the Stöber process. Briefly, tetraethyl orthosilicate (TEOS 98 wt%, Aldrich) was added to a stirring solution of ammonium hydroxyde solution (30%, CarloErba Reagents) in ethanol directly followed by the dropwise addition of Bis(triethoxysilylpropyl)disulfide (BTSPD 98 wt%, ABCR) and finally the addition of a solution of fluorescein-grafted aminopropyl triethoxysilane (APTES, Merck; FITC isomer 1 95%, Alpha Aesar). All solutions had the same composition except for the concentration of BTSPD: 0.16 mol/l TEOS, 0.34 mol/l ammonium hydroxide, 0.09 mmol/l final FITC concentration, 6 mm final APTES concentration. BTSPD concentrations for 10%SS, 20%SS, 30%SS and 40%SS were respectively 6.7, 13.4, 20.2 and 26.9 mmol/l. The solution was stirred for 48h at room temperature before purification of the nanoparticles by dialysis (Spectra/Por, diameter 25 mm, pore diameter 4.2 5.0 nm from Carl Roth) with 200 ml particle suspension being dialysed 5 times under magnetic stirring against 2 L of ultrapure water (Milli-Q) with a minimum time of 4 h. Solid-state NMR Solid-state NMR spectra were performed on a Bruker AVANCE III 300 WB spectrometer at B 0 = 7.04 T with ν 0 ( 1 H) = 300 MHz, ν 0 ( 13 C) = 75.51 MHz, ν 0 ( 29 Si) = 59.66 MHz using a 7 mm probe for 1D and a 4 mm probe for 2D HETCOR experiments. Cross-polarization coupled to magic angle spinning (CP-MAS) was performed on dried powders finely grounded and packed into ZrO 2 rotors. The spinning rate was 5 khz for 1D and 14 khz for 2D experiments. 1D CP-MAS experiments were carried out using ramp up polarization transfer conditions, 90 pulse, recycle delays of 1 s, contact times of 1 ms and 3 ms for respectively 2

{ 1 H}- 13 C CP-MAS and { 1 H}- 29 Si CP-MAS experiments, recording 4.096 scans. 2D HETCOR-MAS experiments were carried out using tangent ramp polarization transfer conditions, recycle delays of 1 s, spectral width of 14 khz, contact times of 1 ms and 3 ms for respectively { 1 H}- 13 C HETCOR and { 1 H}- 29 Si HETCOR experiments, recording 32 slices (f1 dimension) and 1.680 scans for { 1 H}- 13 C HETCOR and 6.800 scans for { 1 H}- 29 Si HETCOR experiments. For both 1D and 2D experiments, a line broadening of 30 Hz was applied for { 1 H}- 13 C and 50 Hz for { 1 H}- 29 Si experiments using an exponential apodization function on the f2 dimension. For 2D experiments, a cosine apodization function was applied on the f1 dimension. Refocused { 1 H}- 29 Si INEPT sequence (Insensitive Nuclei Enhanced by Polarization Transfer) was carried out using a 4 mm probe heated at 353 K, spinning at 8 khz, with a recycling delay of 2 s, recording 72.240 scans and using 10 ms for both evolution and refocalisation delays. A line broadening of 10 Hz was applied. Dissolution and reduction by DTT Dissolution of x%ss particles was assessed at ph 7.4 in Tris-HCl buffer (50 mm with 10 mm KCl) and at ph 4.5 in acetate buffer (50 mm with 10 mm KCl) with the silicomolybdate method as described in [13]. Reduction of the disulfide by dithiothreitol (DTT) was monitored by UV-visible spectroscopy through the absorbance at 290 nm of the cyclic compound resulting from the oxidation of DTT. x%ss particles were suspended in Tris-HCl buffer ph 7.4 at 0.6 mg/ml and dioxygen was removed by flowing nitrogen in the solution for 5 minutes and thus avoid oxidation of DTT by oxygen. Subsequently, DTT solution in phosphate buffer (0.2 M) was added to obtain 3

a final concentration of 1.3 mm and the solution was kept at 37 C in oxygen-free atmosphere. At determined times, 1 ml solution was removed, centrifuged 15 minutes at 6,000 rpm and absorbance at 290 nm was recorded. Cells and treatments with nanoparticles Normal human dermal fibroblasts (from Promocell) were grown in Dulbecco's Modified Eagle Culture Medium (DMEM, Gibco BRL) supplemented with fetal Calf Serum (10%, from Gibco BRL), penicillin (100 units ml 1 ), streptomycin (100 µg ml 1, from Gibco BRL) and fungizone (0.25 µg ml 1, from Gibco BRL). The culture flasks (75 cm 2 ) were kept at 37 C in 95% humidity and 5% CO 2 atmosphere. At confluence, fibroblasts were removed from cultured flasks by treatment with 0.1% trypsin and 0.02% EDTA. Cells were rinced and resuspended in the supplemented DMEM media. Fibroblasts were used at passage 7-8 for the experiments. Uptake of silica nanoparticles was determined by fluorescence spectroscopy and TEM. The cells were seeded at a density of 30,000 cells per well in 24-well plate with round glass coverslips at the bottom of the wells. The cells were kept 24h with culture medium at 37 C in 95% humidity and 5% CO 2 atmosphere previous to incubation with 0.6 mg ml 1 of x%ss nanoparticles for different times (from 4 hours to 14 days) with replacement of the supernatant by fresh medium on day 7. Nanoparticle internalization For fluorescence microscopy, coverslips with the cells were removed at determined intervals of time, washed three times with PBS 1X, and fixed with 4% paraformaldehyde (1 h, 4 C). Staining of the membranes with wheat germ agglutinin Alexa Fluor 555 conjugate (Invitrogen) and the endosomes with Blue/Yellow Lysosensor (Invitrogen) were used to 4

investigate the internalization and location of the nanoparticles within the cells. Briefly, the coverslips were incubated 15 min at room temperature with Lysosensor, rinsed with HBSS 1X and then incubated for 10 min with the other marker before observation under a fluorescent microscope (Axio 100, Carl Zeiss). For TEM, cells were fixed at determined intervals of time using 3.63% glutaraldehyde in 0.05 M sodium cacodylate buffer with 0.3 M saccharose for 1 h at 4 C. Following this fixation step, samples were washed three times before post-fixing with 2% osmium tetraoxide for 1 h at 4 C. After the washing steps, the cells were detached from the culture flasks and centrifuged. The pellets were dehydrated with an ascending ethanol series ending with propylene oxide and embedded in araldite. Ultra thin sections were prepared with an Ultracut ultramicrotome (Reichert, France). Slides were analyzed with a FEI Tecnai electron microscope operating at 120 kv. Images were obtained for at least 10 cells for each sample. Exocytosis and intracellular dissolution To assess the possible exocytosis of internalized particles, cells were exposed to a suspension of 0.6 mg ml 1 nanoparticles for 7 days in culture medium as described for the uptake experiments. Culture medium was then removed and cells rinsed before adding fresh medium. The fluorescence intensity of medium was analyzed both directly and after centrifugation in a Nanosep 3kD centrifugal device to remove particles and have access to the proportion of released FITC over time. As a reference, a suspension of 0.6 mg/ml nanoparticles in culture medium was kept at 37 C under mechanical stirring. All experiments were performed in triplicate. Toxicological assay 5

Cellular activity of cells in 24-well plate was evaluated with Alamar Blue assay (n = 6). Cells were rinced with medium and incubated, at 37 C in a humidified 5% CO 2 air atmosphere, for 4 h with a 10% solution of alamar blue in phenol red-free culture medium. Absorbance of the medium at 570 nm and 600 nm was recorded with a UV visible spectrometer and cellular activity was calculated. Incubation of the particles with Alamar Blue gave negligible absorbance values. 6

ESI-2 : TEM images of x%ss nanoparticles (scale bar = 100nm) and corresponding size distribution 7

ESI-3 (a) { 1 H}- 13 C and (b) { 1 H}- 29 Si HETCOR ssnmr spectra of 30%SS without APTES 8

ESI-4 : Dissolution of x%ss particles at ph 7.4 and 37 C 9

Electronic Supplementary Material (ESI) for Chemical Communications ESI- 5 : Fluorescence optical imaging of human dermal fibroblast cells after 24 h (left-hand column) and 7 days (right-hand column) contact with x%ss nanoparticles. WGAAlexaFluor555 and Lysosensor yellow-blue were used for red staining of the membrane and blue staining of the endosomes, respectively. Green fluorescence corresponds to FITC. 10

Electronic Supplementary Material (ESI) for Chemical Communications ESI- 6 : TEM images of x%ss silica nanoparticles after 7 days of contact with HDFa (left hand column scale bar = 1 µm ; right hand column scale bar = 100 nm) 11

Electronic Supplementary Material (ESI) for Chemical Communications ESI- 7 : TEM images of x%ss silica nanoparticles with HDFa after 7 days of contact followed by washing and further 7 days in culture (left hand column scale bar = 1 µm ; right hand column scale bar = 100 nm) 12

ESI-8 : Cytotoxicity of x%ss silica nanoparticles as monitored by the Alamar blue test 13