Contents PART 1 EXPERT INTERVIEW WITH BRUCE TOMPKIN PART 2 PATHOGEN UPDATES

Similar documents
Ecology of pathogens in enrichments

Beef Industry Safety Summit Renaissance Austin Hotel 9721 Arboretum Blvd. Austin, TX March 1-3

PART 1 FARM LEVEL PRODUCTION AND REGULATION OF FRESH PRODUCE

Overview of CIDT Challenges and Opportunities

Industry Research Needs

The use of Omics in Hazard Characterisation. Marcel Zwietering Laboratory of Food Microbiology

EURL Working Group on NGS

From classical molecular typing to WGS in a food safety context: WGS at EFSA

Advances in detecting pathogens in foods. Roy Betts Head of Microbiology

PRINCIPLES AND GUIDELINES FOR THE CONDUCT OF MICROBIOLOGICAL RISK ASSESSMENT CAC/GL Adopted Amendments 2012, 2014.

The Future for the Control of Listeria in Food and Beverage Manufacturing. A Leatherhead Food Research white paper. Paul A. Gibbs

Ecology of pathogens in enrichments

Molecular Biology and Microbial Food Safety

Food Safety and Inspection Service A review of laboratory-based regulatory and response activities.

A simplified guide to understanding and using Food Safety Objectives and Performance Objectives

VTEC strains typing: from traditional methods to NGS

Whole Genome Sequencing for food safety FSA Chief Scientific Advisor Report and 2013 Listeria pilot study

Microbial testing. The issue. Why is this important? Things to consider. What to test for

Fresh produce and microbial safety concerns

Bacterial Identification and Characterization

Microbiological specifications

Principles and Guidelines for the Conduct of Microbiological Risk Assessment

Pathogenic organisms no thanks: Use of next generation sequencing techniques in risk assessment and HACCP

The Challenges of Emerging Food Safety Risks to the Food Industry

Interpretation of Microbiological Test Results. Nicola Elviss FW&E Microbiology Network June 2010

Introduction to Whole Genome Sequencing and its Applications in Microbial Diagnostics

The contribution of typing methods to risk assessment - the case of Vero cytotoxin- (Shiga toxin-) producing E. coli (VTEC/STEC)

Emerging Risk Management Tools

Vanessa G. Allen MD Medical Microbiologist Ontario Agency for Health Protection and Promotion

THE USE OF RISK ASSESSMENT TO SUPPORT CONTROL OF SALMONELLA IN PORK

STATEMENT OF COMPLIANCE (HACCP-PREERQUISITES LETTER) December 2016

Curriculum Vitae. Abbas Maleki, Ph.D. Clinical Microbiology Research Center, Ilam University of Medical Sciences, Ilam, Iran

Hazards Occur: Foodborne Illness Statistics. Pathogens Commonly Associated with Fresh Produce: How Can They Be Controlled?

We are IntechOpen, the world s leading publisher of Open Access books Built by scientists, for scientists. International authors and editors

Bachelor s Degree in Food Science and Technology. 3 rd YEAR Food Science II ECTS credits: 4,5 Semester: 1

Curing antibiotic resistance in vivo. Muhammad Kamruzzaman

Is Produce Safe? Microbial Risks from Fresh Produce. Is this a lot? Produce can cause illness. What causes these FBI? 7/25/2010

IFSH WHOLE GENOME SEQUENCING FOR FOOD INDUSTRY SYMPOSIUM May 22-23, 2017

Bacterial Genetics. Prof. Dr. Asem Shehabi Faculty of Medicine University of Jordan

CERTIFICATE OF ACCREDITATION

Compendium. of Methods. for the Microbiological Examination of Foods APHA PRESS. Mary Lou Tortorello. Yvonne Salfinger.

Guidance document Regulation (EC) 882/2004 Microbiological sampling and testing of foodstuffs. Enne de Boer. II. Analysis

Overview of EURL-AMR and NGS activities

Introduction to Whole Genome Sequencing and its Applications in Microbial Diagnostics

FHM-001M: Ecology of pathogens in enrichments

EURL WORKING GROUP ON WHOLE GENOME SEQUENCING AND PULSENET INTERNATIONAL

Microbiology of Healthcare-associated Infections

cgmp/iso CLIA Experience Unsurpassed Quality

The implementation and application of Whole Genome Sequencing in the Campylobacter Reference Laboratory at Public Health England Craig Swift

Introduction to Whole Genome Sequencing and its Applications in Microbial Diagnostics

2011 Beef Safety Summit EXECUTIVE SUMMARY. Dallas, Texas March 2-4, 2011

NZQA registered unit standard version 2 Page 1 of 5. Describe drinking-water contaminants of public health significance

(EFSA-Q ) 1 For the purpose of this document foods of animal origin are limited to fresh unprocessed products of animal origin.

Providing clear solutions to microbiological challenges TM. cgmp/iso CLIA. Polyphasic Microbial Identification & DNA Fingerprinting

REQUEST FOR RESEARCH PROPOSALS

OKLAHOMA DEPARTMENT OF AGRICULTURE, FOOD, AND FORESTRY MEAT AND POULTRY INSPECTION SERVICE OKLAHOMA CITY, OK

An HACCP approach integrating quantitative microbial risk assessment and shelf life prediction

What have we learnt from the re-evaluation? EFSA s perspective

Index 327. Escherichia coli. food-borne pathogen, 66 Shiga toxin, see Shiga toxinproducing

Implementing a Food Safety Intervention Strategy

Provisional Strategic Research Agenda for the One Health European Joint Programme. Date: 14 February 2017

Abstract... i. Committee Membership... iii. Foreword... vii. 1 Scope Introduction Standard Precautions References...

Next Generation Sequencing Applications in Food Safety and Quality

Our world as food scientists has changed already. The most recent

STATEMENT OF COMPLIANCE (HACCP-PREERQUISITES LETTER) July 2015

BEET TECHNOLOGY. PART UVC and BEET. - The ultimate disinfection method. BEET AS Tel: (+47)

Update on activities in ISO and CEN. Kirsten Mooijman

Food Microbiological Examination: General Guidelines

UNITED STATES DEPARTMENT OF AGRICULTURE FOOD SAFETY AND INSPECTION SERVICE WASHINGTON, DC

Climate change, food safety and human health: marine pathogenic bacteria

Emerging Microbial Hazards. Dr Bridget Kelly 23rd May 2007

March 24, Overview

Level 3 Award Food Safety in Catering

THE HORTICULTURE CONFERENCE TH JULY 2018

Livestock Diagnostic Products for Ruminants. Kylt Professional in vitro Diagnostic Solutions.

Microbiology 101 Nina G. Parkinson NGP Consulting November 11, 2014

Module 1: Introduction to Fresh Produce Safety

PROCEEDINGS OF THE ASSOCIATION OF INSTITUTIONS OF TROPICAL VETERINARY MEDICINE

Multilocus Sequence Typing - MLST. Characterisation of bacteria. Hospital outbreak of resistant bacteria. Community outbreak of diarrhoea

REDUCTION EFFICIENCY OF INDEX PATHOGENS IN DRY SANITATION COMPARED WITH TRADITIONAL AND ALTERNATIVE WASTEWATER TREATMENT SYSTEMS

Combatting Antibiotic Resistant Bacteria (CARB) The Need for Data - The USDA Perspective

Sequence quality: GMI Proficiency Tests for Whole Genome Sequencing of bacteria

University Medical Microbiology

PRECISE AND POWERFUL MOLECULAR PATHOGEN DETECTION

Genetic Adaptation II. Microbial Physiology Module 3

Microbial Culture Collection of Cantacuzino Institute

Environmental Surveillance FIDSSA Dr Ben Prinsloo Medical Microbiologist

Genetic Basis of Variation in Bacteria

Ranking Microbiological Risk: EFSA s approach

OPINION OF THE SCIENTIFIC COMMITTEE ON VETERINARY MEASURES RELATING TO PUBLIC HEALTH

The Prerequisites Program includes:

FOOD SAFETY TECHNOLOGY SUMMARY

The American Proficiency Institute is the most innovative. and widely accepted proficiency testing program available.

Austrian Research Centers GmbH - ARC

How well prepared is the fresh produce industry for a food safety scare?

SUMMARY. Key words: antibioticresistance, Enterobacteriaceae, ESBL, CTX-M,

CRE is not the first organism we ve had that has become resistant to antibiotics, so why is it so important? CRE resistance is complex because it can

CHAPTER 2A HOW DO YOU BEGIN TO CLONE A GENE? CHAPTER 2A STUDENT GUIDE 2013 Amgen Foundation. All rights reserved.

PROFICIENCY TESTING PROGRAMS MICROBIOLOGY

Transcription:

Contents PART 1 EXPERT INTERVIEW WITH BRUCE TOMPKIN Interview with a food safety expert: Dr R. Bruce Tompkin R B Tompkin, Retired, USA and J Sofos, Colorado State University, USA - Food safety: past and current - Food safety management systems - Future efforts to further control food safety concerns PART 2 PATHOGEN UPDATES Pathogen update: Salmonella T Hald, DTU, Denmark - Incidence and burden of human salmonellosis - Epidemiology and disease transmission in humans - Classification and subtypes - Tracing the sources of human salmonellosis source attribution - Discussion on sources to human salmonellosis Pathogen update: Listeria monocytogenes J Chen and K Nightingale, Texas Tech, USA - The genus Listeria, L monocytogenes and listeriosis - Listeriosis: epidemiology, virulence factors and evolution - In vitro and in vivo models to assess virulence - Ecology, transmission and genetic diversity of L Monocytogenes - Regulations and risk assessments s Pathogen update: Bacillus species F Carlin, INRA, France and C Nguyen-the, INRA, France - Bacillus cereus in food: characterisation and taxonomy - Poisoning caused by B cereus and other Bacillus spp - Control of Bacillus species in foods and food processing Pathogen update: Vibro species M Strom, National Oceanic and Atmospheric Administration, USA - Source of infection, types of pathology - Virulence and strain variability - Current risk management Other human food-borne pathogenic vibrios - Current and future trends Emerging parasites in food Y Ortega, University of Georgia, USA - Protozoa - Cestoda - Nematoda - Trematoda - Epidemiology, prevention and control

s New research on antimicrobial resistance in foodborne pathogens J Threlfall, HPA, UK - Increasing occurrence of resistance to quinolones and cephalosporins in Salmonella - Increasing occurrences of resistance to quinolones and macrolides in Campylobacter - The recent emergence and spread of new multidrug-resistant clones of monophasic Salmonella Typhimurium-like organisms - Rapid emergence and spread of strains of Enterobacteriaceae, and in particular Escherichia coli, exhibiting resistance to extended spectrum beta (ß)-lactamases (ESBLs) or producing AmpC (ß)- lactamases, control measures Antibiotic resistance development and identification of response measures T Kuile and S Brul, University of Amsterdam, The Netherlands - Existing international risk assessments - Control targets - Monitoring and reporting usage and resistance - Reservation of antibiotics for human health care - Prudent use - Role of the competent authorities - Responsibilites for veterinarians - Farmers mission - Control measures that can be implemented immediately PART 3 PATHOGEN SURVEILLANCE, DETECTION AND IDENTIFICATION Advances in separation and concentration of microorganisms from food samples L Jaykus and S H Suh, North Carolina State University and Byron Brehm-Stecher, Iowa State University, USA - The need for pre-analytical sample processing - Emerging approaches s Second generation polymerase chain reaction (PCR) and DNA microarrays for in vitro and in situ study of foodborne pathogens K Rantsiou and L Cocolin, University of Turin, Italy - Quantitative polymerase chain reaction (PCR) - Transcriptomics s and future trends New approaches in microbial pathogen detection J Irudayaraj, Purdue University, USA - Detection methods - Emerging methods

Tracking of pathogens via virulence factors: Shiga toxin-producing Escherichia coli in cattle and potential risk for human disease J Elder, Colorado State University and K Nightingale, Texas Tech, USA - The impact of Shiga toxin-producing E.coli (SHEC) on public health - STEC virulence factors - Prevalence of STEC in cattle and other reservoirs - Challenges and considerations for the detection of STEC - Summary and discussion and further readings New research on estimating the global burden of foodborne disease R Lake, Institute of Environmental Science and Research, New Zealand, A H Havelaar, National Institute for Public Health and the Environment, The Netherlands and T Kuchenmuller, WMO, Denmark - Estimating the burden of foodborne diseases: metrics and attribution - Foodborne Disease Burden Epidemiology Reference Group (FERG) structure and process - FERG outputs to date and additional reading PART 4 FOOD PRESERVATION TECHNIQUES Novel methods for pathogen control in livestock preharvest: an update T R Callaway, R C Anderson, T S Edrington, K J Genovese, R B Harvey, T L Poole and D J Nisbet, USDA-ARS, USA - Foodborne pathogenic bacteria: Human exposure routes - The gastrointestinal tract microflora and ecological inertia - Delineation of anti-pathogen versus pro-commensal strategies - Competitive enhancement strategies to reduce food-borne pathogens - Direct anti-pathogen strategies to reduce food-borne pathogen - Animal management intervention strategies s New research on ensuring safety in dry processing environments J-L Cordier, Nestlé Quality Assurance Center, Switzerland - Control measures applied during the manufacture of low-moisture products - Survival of pathogens low-moisture products and environments - Fate of pathogens low-moisture processing environments - Cleaning procedures - Verification of control measures - Disinfection and use of sanitizers New research on bacteriophage and food safety J Klumpp and M J Loessner, ETH Zurich, Switzerland - Bacteriophages of foodborne pathogens - General considerations for bacteriophage application - Phage preparations for pathogen detection and control - Bacteriophage lytic enzymes and their application in food - Pathogen detection

s New research on MAP and pathogen behaviour A Vermeulen, P Ragaert, A Rajkovic, S Samapundo, F Lopez-Galvez and F Devlieghere, Ghent University, Belgium - Trends in packaging configurations - Effect of packaging configuration on food safety - Critical evaluation of current research on modified atmosphere packaging and food safety and some future research trends New research on organic acids and pathogen behaviour K Koutsoumanis, Aristotle University of Thessaloniki and P Skandamis, Agricultural University of Athens, Greece - Applications of organic acids in fresh meat decontamination - Application of organic acids in fresh produce decontamination - Risks and concerns: microbial adaptation - Legislation aspects and further reading Progress in intervention programmes to eradicate foodborne helminth infections K Kniel, University of Delaware, USA - Foodborne helminth infections and food animal contamination - Impact of intervention programs - Future directions PART 5 PATHOGEN CONTROL MANAGEMENT Advances in understanding of the impact of personal hygiene and human behaviour on food safety C Griffith, Editor of British Food Journal, UK - Food handler knowledge and practices - Food handlers, cross contamination and hand hygiene - Food safety culture - Food hygiene training and future trends - Further reading Expanding the use of HACCP beyond its traditional application areas W H Sperber, Retired, USA - Historical perspective - Contemporary perspective - Expansion of HACCP beyond traditional areas of application - Necessary and practical food safety improvements - Barriers to food safety progress - A plan for global food safety progress

Biotracing in food safety G C Barker, Institute of Food Research, UK - Elements of biotracing - Biotracing in food chain systems PART 6 UNDERSTANDING AND MODELLING PATHOGEN BEHAVIOUR Advances in single-cell approaches for the study of foodborne pathogens B Brehm-Stecher, Iowa State University, USA - Single-cell analyses in food microbiology - Advances in single-cell techniques for the study of foodborne pathogens and future trends Advances in genomics and proteomics-based methods for the study of foodborne bacterial pathogens P Fratamico, USDA-ARS, USA - Genomic technologies: sequencing, typing and profiling - Functional genomics - Molecular serotyping, subtyping and metagenomics - Food-based proteomic investigations (including introductory section Proteomic-based techniques ) - Mass spectrometry Next generation of predictive models J Baranyi, A Metris and C Pin, Institute of Food Research, UK - Models at cell-population level - Models at single-cell level - Molecular level s