PTC Acquisition of Agilis Biotherapeutics

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PTC Acquisition of Agilis Biotherapeutics July 19, 2018 1

Forward-looking statements within the meaning of The Private Securities Litigation Reform Act of 1995 All statements, other than those of historical fact, contained in this presentation are forward-looking statements, including statements related to PTC s expectations with respect to the closing of its planned acquisition of Agilis and the other transactions contemplated in conjunction with the acquisition; the potential financial impact and benefits to PTC of the acquisition, including with respect to the business of Agilis to be acquired and PTC's expectations with respect to contingent payments to the Agilis equityholders based on net sales and the potential achievement of development, regulatory and sales milestones and contingent payments to the Agilis equityholders with respect thereto; the future expectations, plans and prospects for PTC; PTC's strategy, future operations, future financial position, future revenues or projected costs; and the objectives of management. Other forward-looking statements may be identified by the words "look forward", "plan," "anticipate," "believe," "estimate," "expect," "intend," "may," "target," "potential," "will," "would," "could," "should," "continue," and similar expressions. PTC's actual results, performance or achievements could differ materially from those expressed or implied by forward-looking statements it makes as a result of a variety of risks and uncertainties, including those related to: satisfaction of the conditions to closing the acquisition (including the failure to obtain necessary Agilis stockholder and regulatory approvals) in the anticipated timeframe or at all; PTC s ability to realize the anticipated benefits of the acquisition, including the possibility that the expected benefits from the acquisition will not be realized or will not be realized within the expected time period; negative effects of the announcement of the acquisition on the market price of PTC s common stock; significant transaction costs; unknown liabilities; the risk of litigation and/or regulatory actions related to the acquisition; other business effects, including the effects of industry, market, economic, political or regulatory conditions; changes in tax and other laws, regulations, rates and policies; the eligible patient base and commercial potential of Translarna TM (ataluren) and Emflaza; the sufficiency of PTC's cash resources and its ability to obtain adequate financing in the future for its foreseeable and unforeseeable operating expenses and capital expenditures; and the factors discussed in the "Risk Factors" section of PTC's most recent Quarterly Report on Form 10- Q or Annual Report on Form 10-K as well as any updates to these risk factors filed from time to time in PTC's other filings with the SEC. As with any pharmaceutical under development, there are significant risks in the development, regulatory approval and commercialization of new products. There are no guarantees that any product candidate will receive or maintain regulatory approval in any territory, or prove to be commercially successful, including Translarna or Emflaza, or any product candidates acquired in the transaction from Agilis. The forward-looking statements contained herein represent PTC's views only as of the date of this presentation and PTC does not undertake or plan to update or revise any such forward-looking statements to reflect actual results or changes in plans, prospects, assumptions, estimates or projections, or other circumstances occurring after the date of this presentation except as required by law. Jul-18 2

Delivering on our strategic vision VISION PTC is a fully integrated, innovative rare disorder company leveraging research capabilities and core technology platforms, building out world-class commercial capabilities, and being an ideal partner for late-stage, ultra-orphan disorders for which there is high unmet medical need. Fully Integrated Orphan Franchise STRATEGY Niche Oncology platform Flexible and Opportunistic 3

Strong rare disease combined pipeline Commercial DMD *DMD AADC Deficiency SMA** Late develop. Aniridia Dravet / CDKL5 Early develop. Friedreich Ataxia BMI1 Preclinical Angelman Syndrome HD FD DHODH 1 Cog. Disorder DHODH 2 Gene Therapy and CNS Programs Emflaza TM (deflazacort) Translarna TM (ataluren) NextGen Readthrough Alternative Splicing Oncology * MA requires annual renewal following reassessment by the European Medicines Agency (EMA), confirmatory study 041 for conditional approval ongoing. ** Sunfish clinical study of RG7916 in SMA type 2/3 patients transitioned to its phase 3 second stage in Oct 2017, Firefish in SMA type 1 patients transitioned to its phase 3 second stage in March 2018 4

Acquisition fits perfectly within PTC s strategy 20 years rare genetic disease focus Global development and business infrastructure State of art patient finding & reimbursement Market Access Expertise 5

Potential gene therapy development milestones IND Friedreich Ataxia IND Angelman Syndrome 2019 2020 FDA BLA + EMA MAA submissions AADC Deficiency IND Cognitive disorder /Reelin 6

Platform gene therapy manufacturing advantages Targeted micro-dosing Low doses of vector required Efficient, scalable manufacturing Low manufacturing hurdles using existing systems Strategic partnership with MassBiologics of UMMS* Immediate clinical manufacturing capabilities as well as the potential to expand to commercial scale *MassBiologics of University of Massachusetts Medical School 7

Potential addressable market in excess of $5B AADC, FA, & AS: ~100,000 patients Global Prevalence AADC & FA: ~30,000 patients AADC deficiency: ~5,000 patients AADC: Aromatic L-amino acid decarboxylase FA: Friedreich ataxia AS: Angelman syndrome Launch Sequence 8

Strengthening leadership team and adding experience in gene therapy Dr. Pykett Agilis President and Chief Executive Officer Dr. Cook Agilis Chief Operating Officer 9

Focus on the most advanced gene therapy programs Commercial Late develop. AADC Deficiency Early develop. Friedreich Ataxia Preclinical * MA requires annual renewal following reassessment by the European Medicines Agency (EMA), confirmatory study 041 for conditional approval ongoing. ** Sunfish clinical study of RG7916 in SMA type 2/3 patients transitioned to its phase 3 second stage in Oct 2017, Firefish in SMA type 1 patients transitioned to its phase 3 second stage in March 2018 Jul-18 10

AADC deficiency is a well-defined monogenic disorder amenable to gene therapy Mutation of the DDC gene causes deficiency of the AADC enzyme AADC makes dopamine via well-defined biochemical pathway AADC Dopamine Synthesis L-Dopa Dopamine Putamen Non-dividing cells Affected cells remain intact for long periods Limited, focal number of affected cells Amenable to direct delivery No treatment available for underlying cause Wassenberg T et al. Orphanet J Rare Dis. 2017;12(1):12 11

AADC deficiency is a devastating disease with high unmet need Rare progressive childhood disease, affecting approximately 5,000 patients globally Children with severe AADC deficiency never achieve motor development milestones and require care throughout their lifetimes Profound development failure with shortened life expectancy in severe forms (4-8yrs) Head Position 3-4 months Sitting 6-9 months Standing 10-12 months Severe AADC Normal Wassenberg T et al. Orphanet J Rare Dis. 2017;12(1):12 12

GT- AADC: Advanced CNS-delivered gene therapy program Putamen Target-delivered gene therapy Single administration of AAV2-hAADC Low dose (1.8 x 10 11 vg total) Direct delivery using established stereotactic surgery Clinically durable effect in patients First patients treated in 2010 Three clinical studies with safety data in 26 patients Functional improvements on validated scales Significant and durable gains in major motor development milestones Hwu W et al. Sci Transl Med. 2012;4(134):134ra61 Hwu W et al. Lancet Child Adolesc Health 2017;1: 265 73 13

GT-AADC: Durable restoration of dopamine in patients Pharmacodynamic PET imaging highlights significant de novo dopamine production Significant change from baseline in patients observed, independent of chronological age (n=13) Pre-treated Patient Patient A: at 1 year Patient B: at 5 years Data on file. Agilis Biotherapeutics 14

GT-AADC: Significant & durable motor improvements 1-Year Results of Motor Development PDMS-2 1 through 12 months Studies 1 & 2 5-Year Results of Motor Development PDMS-2 1 through 60 months - Study 1 150 150 Score 100 Score 100 50 50 0 20 40 60 80 100 120 Chronological Age (Months) 0 20 40 60 80 100 120 Chronological Age (Months) 1 Peabody Developmental Motor Scale Data on file. Agilis Biotherapeutics 15

AADC deficiency patient Before and after treatment with GT-AADC https://www.ptcbio.com/en/aadc/ 16

Potential gene therapy development milestones IND Friedreich Ataxia IND Angelman Syndrome 2019 2020 FDA BLA + EMA MAA submissions AADC Deficiency IND Cognitive disorder /Reelin 17

Focus on the most advanced gene therapy programs Commercial Late develop. AADC Deficiency Early develop. Friedreich Ataxia Preclinical * MA requires annual renewal following reassessment by the European Medicines Agency (EMA), confirmatory study 041 for conditional approval ongoing. ** Sunfish clinical study of RG7916 in SMA type 2/3 patients transitioned to its phase 3 second stage in Oct 2017, Firefish in SMA type 1 patients transitioned to its phase 3 second stage in March 2018 Jul-18 18

Friedreich Ataxia (FA) is a severe neuromuscular disorder amenable to gene therapy Inherited, monogenic disease arising from triplet repeat expansion Mutation in frataxin gene limits protein production Larger repeat expansion Most common hereditary ataxia (~25,000 patients globally) Lower protein levels Childhood onset Debilitating, life shortening neuromuscular disorder Reduced mitochondrial function Dentate nucleus Purkinje cell Only palliative treatments available currently Koeppen A. J Neurol Sci. 2011 April 15; 303(1-2): 1 12 19

Moving toward IND filing in 2019 GT-FA Intracerebellar Dosing in Porcine Model* GT-FA Intracerebellar Dosing in NHP Model* 1000 Cerebellar Cortex 3000 Cerebellar Cortex ELISA for Human Frataxin (ng/g) 800 600 400 200 0 Dentate Nucleus Target Frataxin Protein Healthy Human DN ELISA for Human Frataxin (ng/g) 2500 2000 1500 1000 500 0 Dentate Nucleus Target Frataxin Protein Healthy Human DN Unilateral dose of 3.0 x 10 12 vg total - Day 28 Mean (SEM) *Human-specific detection 20 Bi-lateral Dose of 2.4 x 10 12 vg total - Day 28 - Mean (SEM) *NHP background subtracted Data on file. Agilis Biotherapeutics 20

Most advanced FA gene therapy program PTC plans to file IND in 2019 Targeted Micro dosing / direct to CNS Favorable immunogenic profile Animal data supports appropriate dose Patient group engagement 21

Transaction highlights Consideration $200M upfront ( ~ $150M stock / $50M cash) $60M potential future development milestones in the next 2-years, including BLA acceptance for GT-AADC Up to $535M related to regulatory approvals for AADC, FA and Angelman + one PRV Up to $150M in tiered commercial milestones 2-6% of net sales for FA and Angelman Financing Funding using cash on hand Timing Subject to customary closing, expected to be finalized in Q3 2018 22

Significant value creation opportunities over next two years Gene Therapy platform BLA submission and potential approval of first CNS-delivered gene therapy IND submission of FA gene therapy next year Preclinical development of AS and cognitive disorder programs advancing Duchenne franchise Launch of pediatric label expansion for Translarna Translarna Non-ambulatory label expansion submission in 2018 Translarna dystrophin study for U.S. approval in 2019 Continue to establish Emflaza as standard of care Continue to expand Translarna business globally Splicing platform SMA Firefish & Sunfish pivotal data for potential registration Huntington s and FD programs choose DC and enter clinical development Niche Oncology platform Initiation of PTC299 and PTC596 clinical trials 23