Thermo Scientific EASY-nLC 1000 System. Effortless, split-free nanoflow UHPLC Top performance in LC/MS

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Thermo Scientific EASY-nLC 1000 System Effortless, split-free nanoflow UHPLC Top performance in LC/MS

Effortless split-free, nanoflow UHPLC The Thermo Scientific EASY-nLC 1000 is a fully integrated, split-free, nanoflow liquid chromatograph optimized for separating biomolecules such as proteins and peptides at ultra high pressures up to 1000 bar (15,000 psi.) The instrument seamlessly integrates with various mass spectrometers (MS), securing instant trouble-free operation. 2

Using the EASY-nLC 1000 system has increased our throughput by 25% Professor Matthias Mann, Max Planck Institute for Signal Transduction, Germany Top Performance in LC/MS The market leading operating pressure of the EASY-nLC 1000 system offers an unprecedented choice of columns and is designed to help researchers achieve top performance in LC/MS. Combine the Thermo Scientific EASY-Spray source with Acclaim PepMap C18 columns for plug-and-spray simplicity and state-of-the-art performance. 3

Unrivaled ease of use and productivity for instant trouble-free operation Designed for MS workflows Quality assured the system is shipped pre-configured and tested by mass spectrometry Installed and running within hours Accurate and reproducible Dual flow sensors immediately before ultra high-pressure mixing ensure accurate delivery of each mobile phase Automatic and intelligent flow control Continuous 24/7 operation - 2 x 25 ml solvent bottles - Sufficient for up to three weeks use Seamless interface and synchronization with MS - Transfer lines exit through side plate Wizard-style programming - Touch screen control Enclosed cooled autosampler - 96 or 384 well plates - Wash/waste bottles - 54 vial capacity 4

Easy access Modular components Identical valves, pumps, and flow sensors Intelligent maintenance Automatic scripts Remote diagnostics Built-in PC and software Full event log Classic connection nanoviper connection Thermo Scientific Dionex nanoviper fittings eliminate conventional drawbacks Leak-free, fingertight to UHPLC pressures Virtually zero-dead volume by design Ensures maximum performance Gain additional insights from automated 2D experiments The Thermo Scientific EASY-2D application consists of a biphasic SCX-RP precolumn and automatic injection of sample and salt plugs. The Venn diagram from a tryptic digest of a protein extract from a human multiple myeloma cell line clearly demonstrates superior performance to both a simple run and a traditional MudPIT experiment. (Courtesy of Paul Taylor, PhD Hospital for Sick Children, Toronto, Canada) 5

Excellent reproducibility EASY-nLC 1000 vs Standard nano-lc Instrument Parameters Max loading pressure 980 bar vs 280 bar Gradient overhead reduced from 1 hour to 25 mins or less Same setup (140 min MS acquisition) 10 runs per day vs 8 runs per day More Identifications Using the EASY-nLC 1000 system we were able to detect 30% more peptides using longer columns and smaller beads Prof. Jens Ardersen, SDU CEBL, Odense Dermark 1216 40 ºC (three replicates) 1049 946 Relative Abundance 100 90 80 70 60 50 40 30 20 10.17 414.7132 25.36 431.2003 41.51 415.7122 145.65 62.37 495.2914 576.2874 122.88 112.49 472.7680 590.8126 83.78 554.2858 104.52 81.70 513.3069 656.2866 182.62 655.8538 184.82 151.64 839.4651 757.3942 180.05 697.3755 225.06 966.5861 161.02 799.8738 198.38 851.4542 216.45 595.3321 238.66 872.4122 254.71 932.7183 1071 14,843 1234 1246 10 6 0 0 20 40 60 80 100 120 140 160 180 200 220 240 260 Minutes Proven Performance Multiple HeLa Cell Lysate Injections HeLa cell lysates are very complex samples. In this experiment, 4 hour gradients were used to ensure good separation for efficient peptide analysis and subsequent protein identification. The retention time deviation for some key peaks were observed to be less than 40 seconds, corresponding to an RT RSD of approximately 0.3%. 4087 unique proteins were identified from a single HPLC separation of a 1000 ng human cell digest with a 50 cm EASY-Spray column. Additional IDs from Temperature- Controlled Replicates Combining triplicates run at different temperature (optimized for peptide ID) yields up to 15% more peptide IDs and up to 5% more protein IDs, compared to technical replicates run under identical conditions.

in complex samples 2435 35 ºC, 40 ºC and 45 ºC 2320 11,416 2101 Multiple Tryptic Digest BSA Injections Short gradients are used to illustrate Impressive RT RSD (0.2%), Sharp peaks (2.1s FWHM), resulting in High peak capacity under normal conditions Instrument Parameters Thermo Scientific Velos Pro dual pressure ion trap mass spectrometer 1-column setup (10 cm, 50 μm ID, 1.9 μm C18) 5 35% ACN over 10 min Thermo Scientific Nanospray Flex Ion Source 1814 2342 2720 Sharper Peaks Better Separation Split-free, ultra-high-pressure nanoflow LC allows for almost infinite freedom when: Matching inner diameter to optimal linear velocity for each resin Selecting column length and smaller beads to improve separation Reducing column ID to increase analyte concentration for nanoelectrospray ionization and improved detector sensitivity 7

Full compatibility with state-of-the-art LC/MS technology The EASY-nLC 1000 system offers market leading performance and integrates seamlessly with all Thermo Scientific nanoesi sources and MS families Discovery The ultrahigh resolution of the Thermo Scientific Orbitrap Elite mass spectrometer creates new possibilities in research and discovery. EASY-Spray Source Order No. ES081 Quanfirmation The benchtop Thermo Scientific Q Exactive mass spectrometer is a powerful HR/AM instrument to identify, quantify, and confirm. EASY-nLC 1000 For effortless sample introduction. Order No. LC120 Analysis The Thermo Scientific Velos Pro is the pinnacle of ion trap mass spectrometry that delivers enhanced performance for complex sample analyses. Nanospray Flex Source Order No. ES071 Targeted The Thermo Scientific TSQ Vantage triple stage quadrupole mass spectrometer delivers the highest sensitivity with the lowest noise for the quantitative analysis of small molecules, peptides, biosimilars, and biologics. www.thermofisher.com 2016 Thermo Fisher Scientific Inc. All rights reserved. All trademarks are the property of Thermo Fisher Scientific Inc. and its subsidiaries. Specifications, terms and pricing aresubject to change. Not all products are available in all countries. Please consult your local sales representative for details. Africa-Other +27 11 570 1840 Australia +61 3 9757 4486 Austria +43 1 333 50 34 0 Belgium +32 53 73 42 41 Brazil +55 11 3731 5140 China +852 2428 3282 Denmark +45 70 23 62 60 Europe-Other +43 1 333 50 34 0 Finland/Norway/Sweden +46 8 556 468 00 France +33 1 60 92 48 00 Germany +49 6126 991 0 India +91 22 2764 2735 Italy +39 02 51 62 1267 Japan +81 6 6885 1213 Korea +82 2 3420 8600 Netherlands +31 76 579 55 55 Singapore +65 6289 1190 Sweden +46 8 473 3380 Switzerland +41 62 205 9966 Taiwan +886 2 8751 6655 UK/Ireland +44 1442 233555 USA and Canada +847 295 7500 BR52119_E 11/16S