Strategy delivering strong results

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Strategy delivering strong results Third quarter results to September 30, 2013 Flemming Ornskov, MD Chief Executive Officer Graham Hetherington Chief Financial Officer Our purpose We enable people with life-altering conditions to lead better lives.

THE SAFE HARBOR STATEMENT UNDER THE PRIVATE SECURITIES LITIGATION REFORM ACT OF 1995 Statements included herein that are not historical facts are forward-looking statements. Such forward-looking statements involve a number of risks and uncertainties and are subject to change at any time. In the event such risks or uncertainties materialize, Shire s results could be materially adversely affected. The risks and uncertainties include, but are not limited to, that: Shire s products may not be a commercial success; revenues from ADDERALL XR are subject to generic erosion; the failure to obtain and maintain reimbursement, or an adequate level of reimbursement, by third-party payors in a timely manner for Shire's products may impact future revenues and earnings; Shire relies on a single source for manufacture of certain of its products and a disruption to the supply chain for those products may result in Shire being unable to continue marketing or developing a product or may result in Shire being unable to do so on a commercially viable basis; Shire uses third party manufacturers to manufacture many of its products and is reliant upon third party contractors for certain goods and services, and any inability of these third party manufacturers to manufacture products, or any failure of these third party contractors to provide these goods and services, in each case in accordance with its respective contractual obligations, could adversely affect Shire s ability to manage its manufacturing processes or to operate its business; the development, approval and manufacturing of Shire s products is subject to extensive oversight by various regulatory agencies and regulatory approvals or interventions associated with changes to manufacturing sites, ingredients or manufacturing processes could lead to significant delays, increase in operating costs, lost product sales, an interruption of research activities or the delay of new product launches; the actions of certain customers could affect Shire 's ability to sell or market products profitably and fluctuations in buying or distribution patterns by such customers could adversely impact Shire s revenues, financial conditions or results of operations; investigations or enforcement action by regulatory authorities or law enforcement agencies relating to Shire s activities in the highly regulated markets in which it operates may result in the distraction of senior management, significant legal costs and the payment of substantial compensation or fines; adverse outcomes in legal matters and other disputes, including Shire s ability to obtain, maintain, enforce and defend patents and other intellectual property rights required for its business, could have a material adverse effect on Shire s revenues, financial condition or results of operations; and other risks and uncertainties detailed from time to time in Shire s filings with the U.S. Securities and Exchange Commission, including those risks outlined in Item 1A: Risk Factors in Shire s Form 10-K for the year ended December 31, 2012. 2

Strategy delivering strong results One Shire reorganization well underway Resetting our cost base Driving optimum performance from In-Line and Pipeline Growth in the short and long term 3

Strong results demonstrate good progress Product sales forecast Q4 double digit growth driven by FY 2013 Q1 +1% Q2 +7% Q3 YTD +13% +4% mid-to-high single digit product sales growth Increased guidance: We anticipate delivering full year mid-to-high teens Non GAAP earnings growth 4

One Shire: reorganization well underway Specialty Pharma In-line Human Genetic Therapies Regenerative Medicine One Shire transition Pipeline Single R&D organization and business development Simplifying our business structure Greater commercial focus Holistic pipeline assessment More efficient operations Reduction in overlap Cost reduction and margin expansion 5

Sustaining earnings growth Product sales and revenue growth + One Shire transition More efficient ways of working Combined Non GAAP R&D and SG&A for 2013 1-3% lower than in 2012 Pipeline prioritization = Significant operating leverage in 2013 6

In-Line focus driving commercial excellence 7

Firazyr: strong revenue growth driven by US success Patients Patients Product Progress Potential Estimated 7,000-8,000 US HAE sufferers Only around half of sufferers currently treated Firazyr has benefited from its portable, on-demand, subcutaneous self administered presentation Average patient on Firazyr is treating 12 18 attacks per year Firazyr has the leading market share in US of HAE attacks treated acutely* >1,500 patients in US have received Firazyr commercial therapy to date Potential for significant growth in the future with only 50% of the market treated *based on Shire s market research 8

Vyvanse Back to School campaign gains traction in US Positive trends in Rx growth along with good Q3 sales results Specific tactics stabilizing downward trend seen earlier in the year Sales and Marketing Execution Focused efforts for key physician groups Removing barriers to patient access (i.e., formulary position, patient economics) Current Rx growth rates in line with overall market Share growth higher than achieved during the same Back to School period in 2012 9

Building an innovative pipeline to deliver future growth Discovery and Preclinical Phase 1 Phase 2 Phase 3 Registration Discovery and preclinical assets focussed on rare diseases SHP611 MLD (1) LDX* (Japan) ADHD SHP606 (Lifitegrast) Dry eye disease FIRAZYR (EU) ACE inhibitor-induced AE (7) SHP602 (Ferrokin) Iron overload LDX* BED SHP613 Acute Vascular Repair LDX* MDD SHP607 (PREMIPLEX ) Prevention of ROP (2) FIRAZYR (US) ACE inhibitorinduced AE (5) SHP609 Hunter CNS (3) INTUNIV (EU) ADHD Changes since Q2 2013 results: Program code names updated for new One Shire convention (see appendix) Discontinued ABH001 in Epidermolysis Bullosa SHP610 Sanfilippo A (4) Notes * Lisdexamfetamine dimesylate, active ingredient in VYVANSE/ELVANSE. (1) SHP611 is currently in a Phase 1/2 clinical trial. (2) Retinopathy of prematurity (ROP) is a Rare Disease. (3) SHP609 has completed its Ph 1/2 clinical trial and preparation is underway for a Ph 3 trial. (4) SHP610 has completed its Ph 1/2 clinical trial and preparation is underway for a Ph 2b trial. (5) Phase 3 study expected To be as to commence brave as in Q4 the 2013. people we help. (6) Discussions are planned with the FDA to determine potential clinical development pathways. (7) Application for EU label change, based on an investigator sponsored trial was filed in December 2012. SHP555 (US) Chronic Constipation (6) XAGRID (Japan) Essential Thrombocythaemia INTUNIV (Japan) ADHD VPRIV (Japan) Gaucher 10

SHP607 Prevention of ROP is a significant commercial opportunity Patients Product Progress ~30-40K addressable patients in the US and EU per year Surgery is currently the only widely recognized treatment option IGF-1 protein replacement therapy administered preventatively by continuous IV infusion in first 24-48 hours of life Delivered until endogenous production of IGF- 1 begins at ~30-32 weeks gestational age Phase 2 studies ongoing, with headline data expected 1H 2015 Dose optimization completed Potential Significant commercial opportunity to treat a serious unmet need 11

SHP607 Clinical progress Phase 2 multi-centre trial ongoing in Sweden Completed dose optimization Single dose without need for frequent IGF-1 monitoring Allows for scalability across multiple sites and effective commercialization Endpoints 1 o Maximum severity of ROP 2 o Time to discharge from NICU, Development of bronchopulmonary dysplasia (BPD), Growth / weight gain, Head circumference / brain volume Continued safety analysis Headline line data in H1 2015 12

Significant clinical milestones SHP606 dry eye Phase 3 head line data LDX BED & MDD Phase 3 head line data VYVANSE Head to Head versus Concerta Phase 4 data 2014 2015 INTUNIV EU Phase 3 head line data SHP602 Phase 2b iron overload head line data study 203 SHP613 AVF Phase 2 head line data SHP607 ROP Phase 2 head line data FIRAZYR (EU) ACE inhibitorinduced AE approval (1) Registration and Phase 4 Phase 3 Phase 2 (1) Application for EU label change, based on an investigator sponsored trial was, filed in December 2012. 13

Financial review and 2013 outlook Graham Hetherington Chief Financial Officer Our purpose We enable people with life-altering conditions to lead better lives.

Significant third quarter earnings growth Q3 2013 $m Q3 2012 $m Reported Growth Product sales 1,195 1,055 +13% Product sales excluding ADDERALL XR 1,114 952 +17% Royalties and other revenues 42 45-9% Total revenues 1,237 1,100 +12% EBITDA (1) 456 354 +29% EBITDA % of product sales (1)(2) 35% 29% 545bp EPS - ADS (1) $1.77 $1.36 +30% Cash generation (1) 482 355 +36% (1) These are Non GAAP financial measures. See appendix for a list of items excluded from the US GAAP equivalent used to calculate these measures. (2) Excluding royalties and other revenues. 15

Portfolio delivering broad based growth Q3 2013 $m Q3 2012 $m Reported Growth $m % VYVANSE 299 247 52 +21% LIALDA / MEZAVANT 142 104 38 +36% ELAPRASE 129 111 18 +17% REPLAGAL 109 122 (13) -11% VPRIV 88 75 13 +17% INTUNIV 81 69 12 +17% PENTASA 71 67 4 +5% FIRAZYR 63 30 33 +107% DERMAGRAFT 24 34 (10) -29% OTHER 108 93 15 +16% Product sales excluding ADDERALL XR 1,114 952 162 +17% ADDERALL XR 81 103 (22) -20% Product sales 1,195 1,055 140 +13% 16

Significant operating leverage in 2013 Year on Year: 2013 YTD 2012 YTD Product sales +7% +14% R&D (1) +10% +17% SG&A (1) -7% +8% Combined R&D and SG&A (1) -1% +11% Ratios: % of product sales Gross margin (1) 85.9% 86.2% R&D (1) 19% 19% SG&A (1) 32% 37% EBITDA (1) (2) 35% 31% (1) These are Non GAAP financial measures. See appendix for a list of items excluded from the US GAAP equivalents used to calculate these measures. (2) Excluding royalties and other revenues. 17

Strong third quarter cash generation Millions of USD Cash generation +482-48 Tax and interest payments -46 Capital expenditure Free cash flow +388-13 Company share buy back purchases Other investing and financing +9 Net cash inflow QTD +384 Net cash inflow YTD +204 Note: Shire has a revolving 5 year credit facility of $1.2bn signed in November 2010 which remains undrawn at September 30, 2013. 18

Increasing guidance to mid-to-high teens earnings growth in 2013 Direction v. FY 2012 Full year 2013 dynamics Latest guidance Previous guidance where changed Product sales Growth in the mid-to-high single digits (1) Royalties and Other revenues Combined royalties & other revenues 35-40% lower than 2012 Gross margins At a similar level to 2012 Combined R&D and SG&A Reported EPS-ADS R&D 5-7% higher than 2012 Low double digit growth SG&A 5-7% lower than 2012 2-4% lower than 2012 1-3% lower than 2012 Tax rate Core effective tax rate of 18-20% Mid-to-high teens Non GAAP earnings growth for the full year Only marginally higher than 2012 Anticipate delivering full year double digit Non GAAP earnings growth Expectations for 2014-2015 Continuing operating leverage in both 2014 and 2015. Combined R&D and SG&A approximately $250 million lower in 2014 and $300 million lower in 2015 (compared to current consensus expectations (2) ). (1) Similar level of product sales growth expected in the fourth quarter as delivered in the third quarter. (2) Based on the most To recent be as consensus brave as estimates the people compiled we by help. Consensus Forecast Ltd, as of the date of this release, of combined Non GAAP R&D and SG&A of $2,662 million and $2,683 million for the years ending December 31, 2014 and 2015 respectively, available on Shire s website (http://www.shire.com/shireplc/en/investors/forecasts). 19

Summary Flemming Ornskov, MD Chief Executive Officer Our purpose We enable people with life-altering conditions to lead better lives.

Strategy delivering good results One Shire reorganization well underway Resetting our cost base Driving optimum performance from In-Line and Pipeline Growth in the short and long term 21

Questions and Answers Our purpose We enable people with life-altering conditions to lead better lives.

Appendix Our purpose We enable people with life-altering conditions to lead better lives.

Program Code Renaming Index for new One Shire convention New Code Old Code Indication SHP555 SPD555 Chronic Constipation SHP602 SPD602 Iron Overload SHP606 SPD606 Dry Eye Disease SHP607 HGT-ROP-001 Retinopathy of Prematurity SHP609 HGT2310 Hunter CNS SHP610 HGT1410 Sanfilippo Syndrome Type A SHP611 HGT1110 Metachromatic Leukodystrophy (MLD) SHP613 SRM003 Acute Vascular Repair 24

Operating leverage Key financial ratios Year on Year: Q3 2013 Q3 2012 Product sales +13% +4% R&D (1) +2% +22% SG&A (1) +1% -5% Combined R&D and SG&A (1) +1% +3% Ratios: % of product sales Gross margin (1) 84.4% 85.0% R&D (1) 19% 21% SG&A (1) 31% 35% EBITDA (1) (2) 35% 29% (1) These are Non GAAP financial measures. See appendix for a list of items excluded from the US GAAP equivalents used to calculate these measures. (2) Excluding royalties and other revenues. 25

Product sales regional analysis US $m Europe $m LATAM $m Other $m Total $m Q3 2013 product sales 815 248 44 88 1,195 % of Product sales 68% 21% 4% 7% YoY growth +15% +6% +37% +10% +13% YTD 2013 product sales 2,403 737 145 257 3,542 % of Product sales 68% 21% 4% 7% YoY growth +8% +1% +19% +9% +7% FY 2012 product sales 2,929 983 171 324 4,407 % of Product sales 67% 22% 4% 7% YoY growth +14% 0% +33% +19% +12% 26

Royalties & Other revenues Q3 2013 $m Q3 2012 $m Reported Growth FOSRENOL 14 14-1% 3TC and ZEFFIX 10 11-5% ADDERALL XR 6 11-45% REMINYL & Other 8 6 +25% Royalties 38 42-10% Other revenues 4 3 - Royalties & Other revenues 42 45-9% 27

Shire income statement growth analysis 2012 Q1 2012 Q2 2012 Q3 2012 Q4 2012 FY 2013 Q1 2013 Q2 2013 Q3 Direction V. FY 12 FY 2013 Dynamics Explanations Total Product Sales $1,107m $1,148m $1,055m $1,097m $4,407m $1,117m $1,230m $1,195m Growth in the mid-to-high single digits (3) versus prior year +24% +16% +4% +5% +12% +1% +7% +13% Royalties & Other revenues $65m $60m $45m $104m $274m $45m $45m $42m 35-40% lower than 2012 versus prior year -22% -14% -32% +11% -12% -31% -26% -9% Total Revenues $1,172m $1,208m $1,100m $1,201m $4,681m $1,162m $1,275m $1,237m versus prior year +21% +14% +1% +5% +10% -1% +6% +12% Gross Margin (1) (2) 86% 87% 85% 86% 86% 87% 87% 84% At a similar level to 2012 Combined R&D and (2) SG&A $632m $615m $588m $645m $2,480m $592m $626m $595m 1-3% lower than 2012 versus prior year +20% +10% +3% +8% +10% -6% +2% +1% Tax Rate (2) +20% +20% +18% +15% +18% +19% +23% +19% Core effective tax rate of 18-20% EPS ADS (2) $1.48 $1.68 $1.36 $1.58 $6.10 $1.63 $1.79 $1.77 versus prior year +20% +26% +6% +4% +14% +10% +6% +30% Mid-to-high teens Non GAAP earnings growth for the full year (1) Gross margin calculated as a percentage of product sales. (2) These are Non GAAP financial measures. See appendix for a list of items excluded from the US GAAP equivalents used to calculate these measures. (3) Similar level of product sales growth expected in the fourth quarter as delivered in the third quarter. 28

Non GAAP cash flow measures Non GAAP cash generation and free cash flow reconciliation Q3 2013 $m Q3 2012 $m Non GAAP cash generation (1) 482 355 Tax and interest payments, net (48) (67) US GAAP net cash provided by operating activities 434 288 Capital expenditure (46) (27) Non GAAP free cash flow (2) 388 261 (1) Non GAAP cash generation represents net cash provided by operating activities, excluding up-front and milestone payments for in-licensed and acquired products, tax and interest payments. (2) Non GAAP free cash flow represents net cash provided by operating activities, excluding up-front and milestone payments for in-licensed and acquired products, but including capital expenditure in the ordinary course of business. 29

Non GAAP net cash September 30, 2013 $m December 31, 2012 $m Cash and cash equivalents 1,686 1,482 Convertible bonds (1,100) (1,100) Other (9) (9) Net cash 577 373 30

Non GAAP measures This presentation contains financial measures not prepared in accordance with US GAAP. These Non GAAP financial measures are used by Shire s management to make operating decisions because they facilitate internal comparisons of the Company s performance to historical results and to competitors results. They should not be considered in isolation from, as substitutes for, or superior to financial measures prepared in accordance with US GAAP. The following items are excluded from these non-gaap financial measures: Amortization and asset impairments: Intangible asset amortization and impairment charges; and Other than temporary impairment of investments. Acquisitions and integration activities: Upfront payments and milestones in respect of in-licensed and acquired products; Costs associated with acquisitions, including transaction costs, and fair value adjustments on contingent consideration and acquired inventory; Costs associated with the integration of companies; and Non-controlling interest in consolidated variable interest entities. Divestments, re-organizations and discontinued operations: Gains and losses on the sale of non-core assets; Costs associated with restructuring and re-organization activities; Termination costs; and Income / (losses) from discontinued operations. Legal and litigation costs: Net legal costs related to the settlement of litigation, government investigations and other disputes (excluding internal legal team costs). 31

Investor relations contacts North America: Eric Rojas T: +1 781 482 0999 E: erojas@shire.com Europe: Sarah Elton-Farr Souheil Salah T: +44 1256 894157 T: +44 1256 894160 E: seltonfarr@shire.com E: ssalah@shire.com Our purpose We enable people with life-altering conditions to lead better lives.