Table of domains participating in Swap events, and listings of the protein isoforms (annotated for Pfam domains) giving rise to Swap events.

Similar documents
Molecular Cell Biology - Problem Drill 01: Introduction to Molecular Cell Biology

Time allowed: 2 hours Answer ALL questions in Section A, ALL PARTS of the question in Section B and ONE question from Section C.

ENCODE DCC Antibody Validation Document

Inserting genes into plasmids

Supplemental Material for: A high-throughput RNA-seq approach to profile transcriptional responses

Gene expression DNA RNA. Protein DNA. Replication. Initiation Elongation Processing Export. DNA RNA Protein. Transcription. Degradation.

BME Engineering Molecular Cell Biology. The Cytoskeleton (I): Actin The Cytoskeleton (II): Microtubule & Intermediate Filament

Cell-Extracellular Matrix Interactions

BIO 311C Spring Lecture 16 Monday 1 March

Section C: The Control of Gene Expression

Gut microbial colonization in day old chicks. Henri Woelders DirkJan Schokker Mari A. Smits

Quick Review of Protein Synthesis

Chemistry 1050 Exam 4 Study Guide

Chemistry 1120 Exam 3 Study Guide

namibia UniVERSITY OF SC IEnCE AnD TECHnOLOGY FACULTY OF HEALTH AND APPLIED SCIENCES DEPARTMENT OF HEALTH SCIENCES PAPER: THEORY

Translation. Protein Synthesis

Introduction to Proteins

DNA. Branden & Tooze, Ch. 7 Deoxyribose nucleic acids are made of three parts

The cytoskeleton. The cytoskeleton, the motor proteins, the muscle and its regulation. The cytoskeleton. The cytoskeleton.

DNA Binding Domains: Structural Motifs. Effector Domain. Zinc Fingers. Zinc Fingers, continued. Zif268

DNA RNA PROTEIN. Professor Andrea Garrison Biology 11 Illustrations 2010 Pearson Education, Inc. unless otherwise noted

CELL BIOLOGY - CLUTCH CH. 7 - GENE EXPRESSION.

1.5 Nucleic Acids and Their Functions Page 1 S. Preston 1

Key Area 1.3: Gene Expression

BIOLOGY 311C - Brand Spring 2008

3.1 Storing Information. Polypeptides. Protein Structure. Helical Secondary Structure. Types of Protein Structure. Molecular Biology Fourth Edition

Amino Acids & Proteins

Gene Expression and Regulation - 1

Chapter 3 An Introduction to Gene Function 3.1 Storing Information 3.2 Replication 3.3 Mutation

Translation Mechanisms

Self-test Quiz for Chapter 12 (From DNA to Protein: Genotype to Phenotype)

Chapter 2 Molecules to enzymes - Short answer [72 marks]

Please sign below if you wish to have your grades posted by the last five digits of your SSN

From Gene to Protein. Wednesday, 26th July

Bayesian Decomposition

The Central Dogma. DNA makes RNA makes Proteins

Human Anatomy & Physiology I Dr. Sullivan Unit IV Cellular Function Chapter 4, Chapter 27 (meiosis only)

Mechanism of action-1

Sequence Databases and database scanning

Lecture Summary: Regulation of transcription. General mechanisms-what are the major regulatory points?

Hemidesmosome. Focal adhesion

Chapter 11. Gene Expression and Regulation. Lectures by Gregory Ahearn. University of North Florida. Copyright 2009 Pearson Education, Inc..

Chapter 3 Nucleic Acids, Proteins, and Enzymes

Differential Gene Expression

Unit II Problem 3 Genetics: Summary of Basic Concepts in Molecular Biology

Spring 2006 Biochemistry 302 Exam 2

Chapter 15. Cytoskeletal Systems. Lectures by Kathleen Fitzpatrick Simon Fraser University Pearson Education, Inc.

PrimePCR Assay Validation Report

Unit 1 Human cells. 1. Division and differentiation in human cells

Chapter 5: Microbial Metabolism (Part I)

Molecular biology WID Masters of Science in Tropical and Infectious Diseases-Transcription Lecture Series RNA I. Introduction and Background:

Lecture 11: Metalloproteins - I

Highlights Translation I

Relationship of Gene s Types and Introns

Chapter 8 Lecture Outline. Transcription, Translation, and Bioinformatics

Transcription. By : Lucia Dhiantika Witasari M.Biotech., Apt

Gene Expression: Transcription

TRANSCRIPTION COMPARISON OF DNA & RNA TRANSCRIPTION. Umm AL Qura University. Sugar Ribose Deoxyribose. Bases AUCG ATCG. Strand length Short Long

Metabolism BIOL 3702: Chapter 10

CELL BIOLOGY BIOL3030, 3 credits Fall 2012, Aug 20, Dec 14, 2012 Tuesday/Thursday 8:00 am-9:15 am Bowman-Oddy Laboratories 1049

CYTOSKELETON, MOTORPROTEINS.

Introduction to genome biology Sandrine Dudoit and Robert Gentleman

2012 GENERAL [5 points]

Biochemistry 302. Exam 2. March 10, Answer Key

2 nd Term Final. Revision Sheet. Students Name: Grade: 12-A/B. Subject: Chemistry. Teacher Signature. Page 1 of 10

Post-translational modification

IB BIO I Replication/Transcription/Translation Van Roekel/Madden. Name Date Period. D. It separates DNA strands. (Total 1 mark)

Switch On Protein-Protein Interactions

Molecular Genetics. The flow of genetic information from DNA. DNA Replication. Two kinds of nucleic acids in cells: DNA and RNA.

Bi 8 Lecture 7. Ellen Rothenberg 26 January Reading: Ch. 3, pp ; panel 3-1

Chapter 25: Regulating Eukaryotic Transcription The Ligand Responsive Activators

Chem 465 Biochemistry II

Find this material useful? You can help our team to keep this site up and bring you even more content consider donating via the link on our site.

Towards definition of an ECM parts list: An advance on GO categories

NUCLEIC ACID METABOLISM. Omidiwura, B.R.O

PrimePCR Assay Validation Report

Microbial Metabolism. PowerPoint Lecture Presentations prepared by Bradley W. Christian, McLennan Community College C H A P T E R

Judy Wieber. Department of Computational Biology. May 28, 2008

BIOLOGY 111. CHAPTER 6: DNA: The Molecule of Life

1 Scaffolds. 2 Extracellular matrix

Chapter 4: How Cells Work

Chapter 4: How Cells Work

Old EXAM 1 BIO409/509 NAME. Please number your answers and write them on the attached, lined paper.

C. Incorrect! Threonine is an amino acid, not a nucleotide base.

Creation of a federated database of blood proteins: a powerful new tool for finding and characterizing biomarkers in serum

From Gene to Protein transcription, messenger RNA (mrna) translation, RNA processing triplet code, template strand, codons,

Chapter 9 - Protein Translation

Biochemistry, Cell and Molecular Biology Test Practice Book

Eukaryotic Gene Expression Prof. P. N. Rangarajan Department of Biochemistry Indian Institute of Science, Bangalore

Chapter 17. From Gene to Protein. Slide 1. Slide 2. Slide 3. Gene Expression. Which of the following is the best example of gene expression? Why?

Nucleic Acids and the Encoding of Biological Information. Chapter 3

Scientific Method. Name: NetID: Exam 1 Version 1 September 12, 2017 Dr. A. Pimentel

DNA Function: Information Transmission

CHAPTER 18 LECTURE NOTES: CONTROL OF GENE EXPRESSION PART B: CONTROL IN EUKARYOTES

Transcription: Synthesis of RNA

DNA and RNA Structure Guided Notes

PrimePCR Assay Validation Report

Unit 1: DNA and the Genome. Sub-Topic (1.3) Gene Expression

RNA Expression of the information in a gene generally involves production of an RNA molecule transcribed from a DNA template. RNA differs from DNA

The cytoskeletal system

Transcription:

Table of domains participating in Swap events, and listings of the protein isoforms (annotated for Pfam domains) giving rise to Swap events. I. Table of domains participating in Swap events in 65 pairs of protein isoform sequences. Domains participating in Swap Events (D1 <> D2) Domain D1 Domain D2 Description of Domain D1 Description of Domain D2 Hormone_receptor zf C4 Ligand binding domain of nuclear hormone receptor. Steroid hormone receptor activity; transcription factor activity. DNA dependent regulation of transcription. KRAB Zf C2H2 Kruppel associated box. Nucleic Acid binding; DNA dependent regulation of transcription. Zinc finger C4 type. Found in steroid/thyroid hormone receptors; transcription factor activity. Regulation of transcription. Zinc finger. Nucleic acid binding. SCAN zf C2H2 SCAN domain (named after SRE ZBP, CTfin51, AW 1 and Number 18 cdna). Found in several zf C2H2 proteins. DNA dependent regulation of transcription. Zinc finger, C2H2 type. Zinc ion binding; nucleic acid binding. Mito_carr efhand Mitochondrial carrier. Transport CH Plectin Calponin homology domain. Actin binding family. Cytoskeletal / signal transduction sushi CUB Sushi domain (SCR repeat) Complement control protein (CCP) modules, or short consensus repeats (SCR). Complement and adhesion. RGS PDZ Regulator of G protein signaling domain. C2 PDZ Ca2+ dependent membrane targeting module. Signal transduction / EF hand. Calcium ion binding. Signaling. Buffering/transport. Plectin repeat. Found in Plakin proteins. Plasma and nuclear membrances. Structural motif in extracellular and plasma membrane associated proteins. PDZ domain. Protein binding. Signaling PDZ domain. Protein binding. Signaling

Domains participating in Swap Events (D1 <> D2) membrane trafficking collagen emi Collagen triple helix repeat. Phosphate transport. Extracellular structural proteins Found in extracellular proteins. Nebulin LIM Nebulin repeat. Found in the thin filaments of striated vertebrate muscle. Actin binding protein. PH Pkinase_Tyr pleckstrin homology. Intracellular signaling / constituent of cytoskeleton. Pkinase_tyr supposed to contain PH domains. LIM domain (Binding protein).zinc ion binding. Interface for protein protein interaction Protein tyrosine kinase. Mediates the response to external stimuli. Tubulin binding MAP2_projctn Tau and MAP protein. Tubulinbinding repeat. FHA BRCT Forkhead associated domain. Phosphopeptide binding motif MAP domain (MHC class II analogue protein) BRCA1 C terminus domain. Phospho protein binding protein. NTP_transf_2 PAP_RNA bind Nucleotidyltransferase domain. Poly(A) polymerase predicted RNA binding domain. Polynucleotide adenyltransferase activity. Ion_trans Ion_trans_2 Ion transport protein Ion channel. Both are of same clan. Orn_Arg_deC_N Orn_DAP_Arg_deC Pyridoxal dependent decarboxylase, pyridoxal binding domain. Catalytic activity MAM ig Adhesive function. Cellular component : membrance Pyridoxal dependent decarboxylase, C terminal sheet domain. Catalytic activity. Immunoglobulin domain ig I set Immunoglobulin Immunoglobulin intermediate. Both are of same clan. I set V set Immunoglobulin I set (intermediate) domain. I set and V set are of same clan. Immunoglobulin V set (variable) domain. EGF_CA EGF Calcium binding EGF domain. EGF like protein. Both are of same clan. Hydrolase E1 E2_ATPase Haloacid dehalogenase like hydrolase. Catalytic activity. Metabolic process Hydrolase activity. ATP binding. Radical_SAM Mob_synth_C Catalytic activity; iron sulfur cluster binding. Molybdenum cofactor synthesis C. iron, sulfur cluster binding Aconitase Aconitase_C Aconitase hydratase. Lyase activity. Aconitase hydratase. Hydro

Domains participating in Swap Events (D1 <> D2) lyase activity. Filament Filament_head Intermediate filament protein. Structural molecule activity CNH Pkinase Citron and Citron kinase. Small GTPase regulator activity. PSI Sema Plexin repeat. Membrane. Receptor activity Head region of intermediate filaments. Protein kinase activity. ATP binding. Semaphorins. Secreted and transmembrane proteins. GTP_EFTU_D2 GTP_EFTU Elongation factor GTP binding. Elongation factor PARP WWE Poly(ADP ribose) polymerase. Catalyses covalent attachment of ADP ribose to DNA binding proteins Mediates protein protein interactions in ubiquitin and ADP ribose conjugation system. Sushi An_peroxidase Complement control protein (CCP) modules, or short consensus repeats (SCR). Complement and adhesion Animal haem peroxidase. Peroxidase activity. PH Oxysterol_BP pleckstrin homology. Intracellular signaling / constituent of cytoskeleton Oxysterol binding protein. Steroid metabolic process Ank KH_1 Ankyrin repeat. Protein protein interaction GON TSP_1 Proteinaceous extracellular matrix. Zinc ion binding. Metalloendopeptidase activitiy. K homology domain. RNA binding Thrombospondin type 1 domain. Cell adhesion Thioredoxin DnaJ Participates in redox reactions. Heat shock protein binding Collagen EMI Collagen triple helix repeat. Phosphate transport process. Connective tissue structures. HECT RCC1 HECT domain (ubiquitin transferase) Homologous to the E6 AP Carboxyl terminus. Ubiquitin protein ligase; protein modification process. EMI domain. Participates in multimerization Regulator of chromose condensation. Acts as a guaninenucleotide dissociation simulator (GDS)

II. Listings of the protein isoforms (annotated for Pfam domains) giving rise to the observed swap events. II.1. Isoform pairs from ASD data set in all the three instances, the isoforms involve domain repeats. There is a possibility of ambiguity in the alignment due to repeats. 'ENSG00000078018_1', 'Tubulin binding', 'Tubulin binding', 'Tubulin binding', 'Tubulin binding' 'ENSG00000078018_2', 'MAP2_projctn', 'Tubulin binding', 'Tubulin binding' SWAP : Tubulin binding, MAP2_projctn 'ENSG00000077232_2', 'Thioredoxin', 'Thioredoxin' 'ENSG00000077232_1', 'DnaJ', 'Thioredoxin' SWAP : Thioredoxin, DnaJ 'ENSG00000121904_2', 'CUB', 'Sushi', 'CUB', 'Sushi', 'CUB', 'Sushi', 'CUB', 'Sushi', 'CUB', 'Sushi', 'CUB', 'Sushi', 'CUB' 'ENSG00000121904_3', 'Sushi', 'Sushi', 'Sushi', 'Sushi', 'Sushi', Sushi', Sushi', Sushi', 'Sushi', 'Sushi', 'Sushi', SWAP : CUB, Sushi II.2. Isoform pairs from Vega data set II.2.1. 6 Isoform pairs from Vega data set the isoforms do not show repeating domains and hence the Swap events do not have any ambiguities. 'OTTHUMP00000022812', 'C2', 'RGS' 'OTTHUMP00000022813', 'C2', 'PDZ' SWAP : RGS, PDZ 'OTTHUMP00000178079', 'FHA', 'Nbs1_C' 'OTTHUMP00000178080', 'BRCT', 'Nbs1_C' SWAP : FHA, BRCT 'OTTHUMP00000200912', 'Collagen', 'C1q' 'OTTHUMP00000122584', 'EMI', 'C1q' SWAP : Collagen, EMI 'OTTHUMP00000201249', 'PAP_central', 'NTP_transf_2' 'OTTHUMP00000201247', 'PAP_central', 'PAP_RNA bind' SWAP : NTP_transf_2, PAP_RNA bind 'OTTHUMP00000019911', 'Ion_trans', 'BK_channel_a' 'OTTHUMP00000019914', 'Ion_trans_2', 'BK_channel_a' SWAP : Ion_trans, Ion_trans_2 'OTTHUMP00000009220', 'Ion_trans_2', 'KCNQ_channel' 'OTTHUMP00000009219', 'Ion_trans', 'KCNQ_channel' SWAP : Ion_trans_2, Ion_trans

II. Repeating domains. II.2.2. 56 Isoform pairs from Vega data set the isoforms show repeating domains and hence the Swap events may have ambiguities. 'OTTHUMP00000035904', 'Orn_Arg_deC_N', 'Orn_Arg_deC_N' 'OTTHUMP00000004286', 'Orn_Arg_deC_N', 'Orn_DAP_Arg_deC' SWAP : Orn_Arg_deC_N, Orn_DAP_Arg_deC 'OTTHUMP00000065228', 'ig', 'ig' 'OTTHUMP00000199573', 'I set', 'I set', 'I set', 'ig', 'I set', 'I set', 'V set' SWAP : ig, I set 'OTTHUMP00000199573', 'I set', 'I set', 'I set', 'ig', 'I set', 'I set', 'V set' 'OTTHUMP00000065227', 'I set', 'I set', 'I set', 'I set', 'ig', 'ig' SWAP : I set, ig 'OTTHUMP00000198230', 'EGF_CA', 'EGF_CA', 'GCC2_GCC3', 'GCC2_GCC3', 'GCC2_GCC3', 'CUB' 'OTTHUMP00000198231', 'EGF_CA', 'EGF', 'EGF', 'EGF', 'EGF'] SWAP : EGF_CA, EGF 'OTTHUMP00000198230', 'EGF_CA', 'EGF_CA', 'GCC2_GCC3', 'GCC2_GCC3', 'GCC2_GCC3', 'CUB' 'OTTHUMP00000198232', 'EGF_CA', 'EGF', 'EGF', 'EGF' SWAP : EGF_CA, EGF 'OTTHUMP00000194317', 'Hormone_recep', 'Hormone_recep' 'OTTHUMP00000194316', 'zf C4', 'Hormone_recep' SWAP : Hormone_recep, zf C4 'OTTHUMP00000029891', 'Hydrolase', 'Hydrolase', 'Cation_ATPase_C' 'OTTHUMP00000029890', 'Cation_ATPase_N', 'E1 E2_ATPase', 'Hydrolase', 'Cation_ATPase_C' SWAP : Hydrolase, E1 E2_ATPase 'OTTHUMP00000016657' : 'Plectin', 'Plectin', 'Plectin', 'Plectin' 'OTTHUMP00000016654', 'CH', 'CH', 'Plectin', 'Plectin', 'Plectin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'GAS2' SWAP : Plectin, CH 'OTTHUMP00000170536', 'PH', 'Oxysterol_BP'] (LP) 'OTTHUMP00000170538', 'Oxysterol_BP', 'Oxysterol_BP' SWAP : PH, Oxysterol_BP 'OTTHUMP00000076804', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2'] 'OTTHUMP00000076806', 'KRAB', 'zf C2H2', 'zf C2H2' SWAP : zf C2H2, KRAB 'OTTHUMP00000078314', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078313', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf

C2H2', 'zf C2H2' 'OTTHUMP00000078320', 'KRAB', 'SCAN' 'OTTHUMP00000078321', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' SWAP : SCAN, zf C2H2 'OTTHUMP00000078321', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078319', 'KRAB', 'SCAN' SWAP : zf C2H2, SCAN 'OTTHUMP00000195792', 'Hormone_recep', 'Hormone_recep' 'OTTHUMP00000029871', 'zf C4', 'Hormone_recep' SWAP : Hormone_recep, zf C4 'OTTHUMP00000163915', 'MAP2_projctn', 'Tubulin binding', 'Tubulin binding', 'Tubulin binding' 'OTTHUMP00000165185', 'Tubulin binding', 'Tubulin binding', 'Tubulin binding', 'Tubulin binding'] SWAP : MAP2_projctn, Tubulin binding 'OTTHUMP00000174758', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank' 'OTTHUMP00000159882', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'KH_1' SWAP : Ank, KH_1 'OTTHUMP00000174761', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank' 'OTTHUMP00000159882', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'KH_1'] (LP) SWAP : Ank, KH_1 'OTTHUMP00000174762', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank' 'OTTHUMP00000159882', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'Ank', 'KH_1' SWAP : Ank, KH_1 'OTTHUMP00000016354', 'Radical_SAM', 'Mob_synth_C', 'MoaC' 'OTTHUMP00000016358', 'Mob_synth_C', 'Mob_synth_C' SWAP : Radical_SAM, Mob_synth_C 'OTTHUMP00000016354', 'Radical_SAM', 'Mob_synth_C', 'MoaC' 'OTTHUMP00000016359', 'Mob_synth_C', 'Mob_synth_C' SWAP : Radical_SAM, Mob_synth_C 'OTTHUMP00000194938', 'TSP_1', 'TSP_1', 'ig', 'I set', 'I set', 'I set', 'TSP_1', 'PLAC' 'OTTHUMP00000194939', V set', 'I set' SWAP : I set, V set 'OTTHUMP00000197355', 'RCC1', 'RCC1', 'RCC1', 'RCC1', 'HECT' 'OTTHUMP00000197360', 'RCC1', 'RCC1', 'RCC1', 'RCC1', 'RCC1', 'RCC1' SWAP : HECT, RCC1 'OTTHUMP00000176016', 'Aconitase', 'Aconitase'

'OTTHUMP00000176017', 'Aconitase', 'Aconitase_C' SWAP : Aconitase, Aconitase_C 'OTTHUMP00000167334', 'Filament', 'Filament' 'OTTHUMP00000167332', 'Filament_head', 'Filament' SWAP : Filament, Filament_head 'OTTHUMP00000193482', 'zf C4', 'Hormone_recep' 'OTTHUMP00000193483', 'Hormone_recep', 'Hormone_recep' SWAP : zf C4, Hormone_recep 'OTTHUMP00000019269', 'Nebulin', 'Nebulin', 'Nebulin', 'Nebulin', 'Nebulin', 'Nebulin', 'Nebulin', 'SH3_1' 'OTTHUMP00000019268', ' ', ' ', ' ', ' ', 'LIM', 'Nebulin', 'Nebulin', 'SH3_1' SWAP : Nebulin, LIM 'OTTHUMP00000042793', 'Pkinase', 'CNH' 'OTTHUMP00000069728', 'Pkinase', 'Pkinase' SWAP : CNH, Pkinase 'OTTHUMP00000016720', 'C2', 'C2' 'OTTHUMP00000016718', 'C2', 'C2' 'OTTHUMP00000016719', 'C2', 'C2' 'OTTHUMP00000016716', 'C2', 'C2' 'OTTHUMP00000016717', 'C2', 'C2' 'OTTHUMP00000016715', 'C2', 'C2' 'OTTHUMP00000078354', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078355', 'KRAB', 'zf C2H2', 'zf C2H2' SWAP : zf C2H2, KRAB 'OTTHUMP00000171765', 'Pep_M12B_propep', 'Reprolysin', 'TSP_1', 'ADAM_spacer1', 'GON'

'OTTHUMP00000171764', 'Reprolysin', 'TSP_1', 'ADAM_spacer1', 'TSP_1', 'TSP_1', 'TSP_1', 'TSP_1', 'TSP_1' SWAP : GON, TSP_1 'OTTHUMP00000078134', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078135', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000076080','KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000076081', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000076080', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000076082', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000190874', 'ig', 'I set', 'ig', 'Pkinase_Tyr' 'OTTHUMP00000190880', 'I set', 'I set', 'Pkinase_Tyr' SWAP : ig, I set 'OTTHUMP00000076662', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000076663', 'KRAB', 'zf C2H2', 'zf C2H2' SWAP : zf C2H2, KRAB 'OTTHUMP00000015917', 'Sema', 'PSI' 'OTTHUMP00000016569', 'Sema', 'Sema' SWAP : PSI, Sema 'OTTHUMP00000200773', 'GTP_EFTU', 'GTP_EFTU_D2' 'OTTHUMP00000201789', 'GTP_EFTU', 'GTP_EFTU' SWAP : GTP_EFTU_D2, GTP_EFTU 'OTTHUMP00000126953', 'C1_1', 'C1_1', 'PH', 'Pkinase' 'OTTHUMP00000201837','Pkinase_Tyr', 'Pkinase' SWAP : PH, Pkinase_Tyr 'OTTHUMP00000022251', 'Mito_carr', 'Mito_carr', 'Mito_carr' 'OTTHUMP00000022252', 'efhand', 'Mito_carr' SWAP : Mito_carr, efhand 'OTTHUMP00000172451', 'A1pp', 'A1pp', 'PARP' 'OTTHUMP00000172455', 'A1pp', 'A1pp', 'A1pp', 'WWE' SWAP : PARP, WWE 'OTTHUMP00000172451', 'A1pp', 'A1pp', 'PARP' 'OTTHUMP00000172456', 'A1pp', 'A1pp', 'A1pp', 'WWE'

SWAP : PARP, WWE 'OTTHUMP00000017181', 'MAM', 'fn3', 'fn3', 'Y_phosphatase', 'Y_phosphatase'] (LP) 'OTTHUMP00000017183', 'ig', 'fn3' SWAP : MAM, ig 'OTTHUMP00000115303', 'An_peroxidase', 'Sushi', 'EGF_CA' 'OTTHUMP00000115536', 'An_peroxidase', 'An_peroxidase', 'EGF_CA' SWAP : Sushi, An_peroxidase 'OTTHUMP00000014912', 'zf C4', 'Hormone_recep' 'OTTHUMP00000195566', 'Hormone_recep', 'Hormone_recep' SWAP : zf C4, Hormone_recep 'OTTHUMP00000009301', 'CH', 'CH', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'efhand', 'efhand', 'GAS2' 'OTTHUMP00000009303', 'Plectin', 'Plectin', 'Plectin', 'Plectin', 'Plectin', 'Plectin', 'Plectin', 'Plectin', ' ', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'Spectrin', 'efhand', 'efhand', 'GAS2' SWAP : CH, Plectin 'OTTHUMP00000078368', 'KRAB', 'zf C2H2' 'OTTHUMP00000078367', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078369', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078370', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000193910', 'zf C4', 'Hormone_recep' 'OTTHUMP00000193911', 'Hormone_recep', 'Hormone_recep' SWAP : zf C4, Hormone_recep 'OTTHUMP00000078341', 'KRAB', 'KRAB', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078343', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078341', 'KRAB', 'KRAB', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000078342', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000077559', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2', 'zf C2H2' 'OTTHUMP00000077558', 'KRAB', 'zf C2H2', 'zf C2H2', 'zf C2H2' SWAP : zf C2H2, KRAB

III. The single Swap event observed with PRINTS fingerprints (from ASD data set) ENSG00000157388_1 ENSG00000157388 1828 (LP) ['CACHANNEL', 'LVDCCALPHA1D', 'CACHANNEL'] ENSG00000157388_3 ENSG00000157388 208 ['LVDCCALPHA1D', 'LVDCCALPHA1'] SWAP CACHANNEL, LVDCCALPHA1 IV. The single reshuffle event observed with PRINTS fingerprints (from Vega data set) OTTHUMP00000199126 OTTHUMG00000151097 330 (LP) [''SH2DOMAIN', 'SH3DOMAIN'] False OTTHUMP00000199128 OTTHUMG00000151097 97 ['SH3DOMAIN', 'SH2DOMAIN'] False RESHUFFLE ['SH2DOMAIN', 'SH3DOMAIN'] ['SH3DOMAIN', 'SH2DOMAIN']