Resistance of herpes simplex virus to 9-{1[2-hydroxy-1-(hydroxymethyl)ethoxy]methyl}guanine: Physical mapping of drug

Size: px
Start display at page:

Download "Resistance of herpes simplex virus to 9-{1[2-hydroxy-1-(hydroxymethyl)ethoxy]methyl}guanine: Physical mapping of drug"

Transcription

1 Proc. Natl. Acad. Sci. USA Vol. 81, pp , March 1984 Microbiology Resistance of herpes simplex virus to 9-{1[2-hydroxy-1-(hydroxymethyl)ethoxy]methyl}guanine: Physical mapping of drug synergism within the viral DNA polymerase locus (antiviral resistance/active center of herpes DNA polymerase) C. S. CRUMPACKER*t, P. N. KOWALSKY*t, S. A. OLIVER*t, L. E. SCHNIPPER*t, AND A. K. FIELD *Charles A. Dana Research Institute and the Harvard Thorndike Laboratory, Beth Israel Hospital, and the Divisions of tinfectious Disease and toncology, Department of Medicine, Beth Israel Hospital and Harvard Medical School, Boston, MA 02215; and Department of Virus and Cell Biology, Merck Sharp & Dohme Research Laboratories, West Point, PA Communicated by Harold S. Ginsberg, October 27, 1983 ABSTRACT A herpes simplex virus type 2 () mutant TS6 (strain HG52) induces a heat-labile viral DNA polymerase at the nonpermissive temperature and is markedly resistant to 9-{[2-hydroxy-1-(hydroxymethyl)ethoxy]methyl}- guanine [2'-nor-2'-deoxyguanosine; 2'NDG]. This antiviral drug requires HSV thymidine kinase for phosphorylation to an active inhibitor (2'NDG-triphosphate), and thymidine kinasedeficient mutants of HSV exhibit varying degrees of resistance to 2'NDG, with the HSV type 1 () B2006 mutant (Kit) being markedly resistant. The ts6 mutation and the 2'ndg"-1 mutation within the viral DNA polymerase locus have been physically mapped by marker rescue and generation of HSV- 1/ intertypic recombinants. The physical map limits for the ts6 mutation and 2'ndg"-1 mutation are closely linked within a 2.2-kilobase-pair region of DNA sequences and are physically separate from the paarl and acvr-1 mutations. Resistance to 2'NDG by ts6 can be overcome in the presence of combinations of 2'NDG and phosphonoacetic acid, indicating drug synergism within the viral DNA polymerase locus. These physical mapping studies expand the limits of DNA sequences defining an active center in the viral polymerase to 3.5 kilobase pairs, indicating that regions spanning the entire polymerase polypeptide may contribute to a specialized surface able to interact with nucleotides of different structure. The new antiherpes nucleoside analog 9-{[2-hydroxy-1-(hydroxymethyl)ethoxy]methyl}guanine (2'-nor-2'-deoxyguanosine; 2'NDG) is an efficient inhibitor of herpes simplex virus types 1 and 2 ( and ), human cytomegalovirus, and Epstein-Barr virus replication (1-4). It is a preferential substrate for the thymidine kinase (TK), is readily phosphorylated to the triphosphate, and is a potent inhibitor of viral DNA polymerase (4). It inhibits herpes virus replication in cell culture and has therapeutic efficacy against herpes virus infections in mice. 2'NDG is a structural analog of acyclovir [9-(2-hydroxyethoxymethyl)guanine; ACV]. Restriction endonuclease analysis of the genomes of plaque-purified intertypic recombinants of and HSV- 2, generated by marker rescue, has permitted physical mapping of temperature-sensitive mutations and drug resistance mutations associated with HSV DNA polymerase activity. These included tsc4, tsc7, tsd9 (, strain KOS), tsh (, strain 17), and ts6 (, strain HG52), which are all associated with a thermolabile DNA polymerase activity (5-9). Drug resistance mutations conferring resistance to phosphonoacetic acid (PAA), ACV, and adenine arabinonucleoside (araa) have also been shown to be defined by a 2.6- kilobase-pair (kbp) region of DNA sequences within the viral DNA polymerase locus (5, 10, 11). The recombi- The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C solely to indicate this fact. nants containing the drug resistance mutations induce an altered viral DNA polymerase enzyme exhibiting altered enzyme kinetics and a higher Ki in the presence of PAA, dideoxynucleotide triphosphates, ACV-TP, ara-atp, and (E)- 5-(2-bromovinyl)-2'-deoxyuridine triphosphate (BrVdUrd- TP) (ref. 12; unpublished data). Purified viral polymerase from other drug-resistant mutants have also exhibited altered enzyme kinetics in the presence of ACV-TP (13) and ara-atp (14). The physical mapping of drug resistance mutations that result in altered viral DNA polymerase activity in the presence of these nucleotide triphosphates was used to propose an active center on the viral polymerase enzyme. This is a region of 1.3 kbp in the DNA polymerase locus or a maximal region of 2.6 kbp if the region of uncertainty where crossover events occur is included (12). In this report we describe a mutant of ts6 (strain HG52) that contains a mutation in the structural gene of viral DNA polymerase and is markedly resistant to 2'NDG. The 2'ndgR-1 mutation has been physically mapped to a 2.2-kbp region of DNA sequences within the DNA polymerase locus and is physically separate from the DNA sequences containing the resistance mutations for ACV and PAA. The resistance of ts6 to 2'NDG can be overcome in the presence of 2'NDG and PAA, demonstrating drug synergy within the viral DNA polymerase locus. These physical mapping studies expand the limits of DNA sequences defining the viral DNA polymerase active center to 3.5 kbp. These observations suggest that through tertiary folding almost the entire DNA polymerase polypeptide may contribute to a specialized surface that is able to interact with nucleotides of different structure. MATERIALS AND METHODS Cells. A continuous line of African green monkey kidney cells (Vero) was grown in Eagle's minimum essential medium supplemented with 10% calf serum. Cell monolayers (2.4 x 106 cells) in 60-mm (diameter) plastic Petri dishes (Flow Laboratories) were used throughout. Viruses. The wild-type strains of (KOS and 17) and (HG52) are PAAS and ACV'. The temperature-sensitive (TS) mutant of ts6 (strain HG52) has been described (15, 16). The PAA-resistant mutants of strain 17 (ts+, PAAR_1) and strain KOS (ts+, PAAR-5) were obtained from John Subak-Sharpe and Priscilla Schaffer, respectively. The TK-deficient mutant (dpyk7) of Abbreviations: 2'NDG, 9-{[2-hydroxy-1-(hydroxymethyl)ethoxy]- methyl}guanine or 2'-nor-2'-deoxyguanosine; ACV, 9-(2-hydroxyethoxymethyl)guanine or acyclovir; PAA, phosphonoacetic acid; araa, adenine arabinonucleoside; BrVdUrd, (E)-5-(2-bromovinyl)- 2'-deoxyuridine; kbp, kilobase pair(s); and, herpes simplex virus types 1 and 2, respectively; TK, thymidine kinase. 1556

2 Microbiology: Crumpacker et al (strain 17) had been isolated by growth of wild-type virus in BrdUrd (5,ug/ml) (17) and the mutation was mapped by marker rescue to the viral TK locus (18). The ACVR-6 mutant of was obtained by passing a clinical isolate of in the presence of ACV (0.5,ug/ml) for six passages to select a tk- mutant that expressed only 8% of the TK activity of the wild-type virus (11). The markedly TK-deficient mutant B2006 of the Kit strain was obtained from David Knipe and its properties have been described (19). Drugs. 2'NDG was supplied by Richard Tolman (Merck Sharp & Dohme). A stock solution of 5 mm 2'NDG was prepared in distilled H20 and stored at -20'C. ACV was supplied by Burroughs Wellcome (Research Triangle Park, NC) and a 10 mm stock solution was prepared in distilled H20 and stored at -200C. PAA as the disodium salt was the gift of Abbott. Intertypic Marker Rescue and Analysis of Genome Structure of Recombinants of and. The technique of intertypic marker rescue of ts mutations has been described in detail (5), and the genome structures and phenotypic characteristics of the R6 recombinants have been published (5). In brief, dishes of baby hamster kidney cells were coinfected at the nonpermissive temperature (38.5 C), per dish, with 0.4,g of intact DNA from the ts6 (HG52) mutant and 0.4 pg of unseparated, restriction endonuclease-cleaved fragments of DNA from strain 17 (ts+, paar1). DNA transfection was by use of the modified calcium phosphate technique (20). The ts+ virus progeny from such crosses were plaque-purified three times at 38.5 C, and the parental origin of restriction endonuclease sites in the DNA was determined (5). Resistance to 100 pg of PAA was present in the DNA crosses as a nonselected marker. The ts+ recombinants were previously tested for resistance to PAA by deter- Proc. NatL Acad. Sci. USA 81 (1984) 1557 mining the relative efficiency of plaguing in the presence and absence of drug and for resistance to ACV by determining the ID50 (,M) of drug (10). The physical maps of strain 17 and strain HG52 for the restriction endonucleases Xpa I (1), HindIII (2), EcoRI (3), Bgl 11 (4), Hpa I (5), Kpn I (6), and BamHI (7) in the region of map units on the HSV genome have been determined (5, 18). All of the restriction sites are summarized at the top of Fig. 1. The numbers correspond to the numbers assigned to each restriction endonuclease, and the sites are aligned with the corresponding one for each map. The restriction sites and the corresponding fragments are shown above the line for and below the line for HSV- 2. One map unit is equivalent to 106 daltons (1.6 kbp), and the genome orientation is as described (18). The order and size of the restriction endonuclease fragments for each type have been defined (21, 22). Inhibition of HSV Plaque Formation by 2'NDG. The antiviral activity of 2'NDG was assayed by a plaque-reduction method performed in the presence of increasing concentrations of drug in Vero cells. Inhibition of plaque formation by 2'NDG and PAA together was determined by keeping one drug constant (PAA) and increasing the other over a broad range of concentrations. Both drugs were present in the overlay medium. The ID50 (pg/mi) of each drug combination or single drug relative to control wells without drug was calculated directly from the plot relating surviving plaques in the presence of increasing concentrations of drug on semilogarithmic paper. The relation of the percentage of survivors vs. the logarithm of the drug concentrations is a linear function in the region of 50% reduction, and the best linear plot was obtained by the method of a least squares fit (23). To determine synergism, the ID50s obtained in the presence ~~~ R6-26 R6-30 R6-34 R X ID 50 (Mg/m 2'NDG ACV ts6 PAA -I HSV-I (strain 17 ) WT (stain HG52)WT FIG. 1. Genome structure determined by restriction endonuclease analysis (5, 10) and sensitivities to 2'NDG and ACV of R6 recombinants and parental strains of HSV. Endonuclease cleavage sites for the enzymes given in the Materials and Methods are shown above the line for and below the line for ; solid regions indicate DNA sequences, clear regions indicate DNA sequences, and hatching indicates regions of uncertainty. Data on 50o inhibition with ACV are from ref. 10.

3 1558 Microbiology: Crumpacker etalp Table 1. Sensitivity of mutants of HSV to 2'NDG, ACV, and PAA ID50, pg/mi Type 2'NDG ACV PAA KOS WT PAAR5 (KOS) Strain 17 WT PAAR_1 (strain 17) dpyk-7 (strain 17) ACVR-6 (clinical isolate) B2006 (Kit) HG52 (WT) ts6 (HG52) The 50% inhibitory dose (ID50) is the concentration of drug that inhibited viral plaque formation by 50% on Vero cells. Each value is the mean of three independent assays and in each case the SD was <10% of the mean. of various combinations of 2'NDG and PAA are plotted on an isobologram. The isobologram using ID50 concentration of two antiviral drugs against a single virus is defined to illustrate synergism for the combination when 50% inhibition occurs with only one-fourth the ID50 concentration of each drug alone (24). RESULTS Resistance of ts6 and TK- Mutants to 2'NDG. The strains PAAR_1 (strain 17) and PAAR_5 (strain KOS) were derived by passage in the presence of PAA (100 Mg/ml) and exhibit resistance to PAA, ACV, and araa (6, 10, 11, 13). These two mutants are sensitive to plaque reduction by 2'NDG and the ID50 is similar to that of the strain 17 and strain KOS viruses (Table 1). The ts6 (strain HG52) mutant is sensitive to inhibition by PAA and ACV but it is 10-fold more resistant to 2'NDG than the parent (HG52) (ID50 = 15.5,g/ml). The ts6 mutant induces normal levels of viral TK and alkaline DNase and these loci can be excluded as playing a role in resistance of (ts6) to 2'NDG (12, 25). These studies indicate that resistance to 2'NDG is mediated by the viral DNA polymerase locus, but by a different region of DNA sequences than those containing resistance mutations for paar_1 and acvr1. Bgl-ll i-d Bgl-ll o-c Bam Hi Resistance to 2'NDG can also be mediated by the viral TK locus. The dpyk-7 mutant of (strain 17) induces only a small amount of viral TK activity, is markedly resistant to ACV, and exhibits only one-half as much sensitivity to 2'NDG compared to strain 17 (Table 1). However, the ADVR-6 mutant, a TK- mutant derived by serial passage in ACV and inducing only 8% of the viral TK of the initial WT virus, exhibits marked resistance to both ACV and 2'NDG. Mutant B2006 (Kit) expresses no TK activity, fails to induce the 43-kilodalton viral TK protein, and is the most markedly resistant mutant to ACV and 2'NDG [ID50 = 55,g/ml]. Thus, resistance to 2'NDG is mediated by both the viral DNA polymerase and TK loci of HSV. A mutant expressing diminished TK activity, dpyk-7 (strain 17), is markedly resistant to ACV but only one-half as sensitive to 2'NDG, suggesting a difference in the manner in which these two drugs are processed by the viral TK enzyme. Physical Map Limits of the 2'ndg"-l Mutation. To physically define the map limits for the 2'ndgR-1 mutation within the viral DNA polymerase locus, / intertypic recombinants previously employed to demonstrate the close linkage of the acvr-1, paarj, and araar_1 mutations were tested for plaque inhibition in the presence of 2'NDG. These recombinants contain a small insertion of DNA sequences from mutant PAAR_1 of (strain 17) in an otherwise genome (ts6, strain HG52). The insertion of DNA sequences corrects the ts6 defect, enabling the recombinants to grow at the nonpermissive temperature of 38.5 C (5). The genome structure of these recombinants in the region of map units on the HSV genome, the restriction endonuclease enzymes used in the analysis, and the ID50 for each recombinant and the parental strains to 2'NDG and ACV are depicted in Fig. 1. The R6-26 recombinant contains an DNA insertion extending from the Bgl II i-d site to the BamHI h'-j' site (maps units, , including the region of uncertainty where crossover events occur). This is the smallest region of DNA sequences that all of the R6 recombinants have in common and this region of DNA sequences defines the maximal map units containing the ts6 mutation. The R6-30 recombinant contains an DNA insertion extending from the BamHI g-v site to the BamHI h'-j' site (map units, ); the R6-34 recombinant contains an DNA insertion extending from the Bgl II i-d site to the EcoRI m-o site (map units, ); and the R6-19 recombinant contains h'-j' Kpn x-c I1 Proc. NatL Acad Sci. USA 81 (1984) HSV- 1 Eco RI m-n I 'ndg r_, ara-a r_ 1, acv r_ 1, paa r-1 evima/ 'S"""0X' 5 bvdu r -1 Kbp FIG. 2. Physical map limits of drug resistance mutations within the DNA polymerase locus of HSV. Restriction endonuclease sites and fractional location on the genome are shown. Hatched areas indicate regions of uncertainty where crossover events can occur. Maximal limits for the 2 ndgr-1 mutation are obtained from this study and are compared with previously derived limits for paar-1 (5, 6), acvr-1 (10), araar_1, and bvdu -1 (mutation for resistance to BrVdUrd) (11). Limits shown for paar_1, acvr-1, and araar_1 do not imply order but only that resistance mutations for these three drugs are closely linked within a 2.6-kbp region of HSV DNA. I

4 Microbiology: Crumpacker et al 0 z CMj 20r 8 12 PAA [Mug/mi] FIG. 3. Isobologram using the 50% plaque-reduction concentration (ID50) of 2'NDG and PAA (pg/ml) to illustrate the synergistic effect of the combination of two drugs on ts6. The ID50 for each combination was determined by plaque-inhibition assay in Vero cells and a plot of survivors vs. the logarithm of the drug concentration for 2'NDG with PAA held constant over several concentrations. an DNA insertion extending from the Kpn I j-m site to the Kpn I x-c site (map units, ). All of these recombinants have corrected the ts6 mutation and therefore grow at 38.50C. All are markedly sensitive to 2'NDG (ID50s = ,ug/ml) but have varying phenotypes with respect to PAA, ACV, araa, and BrVdUrd resistance. Recombinant R6-34 is resistant to PAA, ACV, araa, and BrVdUrd; R6-19 is resistant to PAA, ACV, and araa; and R6-26 and R6-30 are sensitive to PAA, ACV, araa, and BrVdUrd (10, 11). The physical map limits of DNA sequence containing the resistance mutation for 2'NDG overlap with the DNA region containing the resistance mutations for ACV, PAA, and araa (Fig. 2). However, the resistance mutations for these three drugs and for BrVdUrd can be transferred separately from the 2'ndgR_1 mutation. This indicates that the resistance mutations occur in separate parts of the DNA polymerase locus, even though the mapping limits contain regions of overlap. Synergism of 2'NDG and PAA on ts6. The ts6 mutant exhibits marked resistance to 2'NDG (ID50 = 15.5,ug/ml) but this resistance can be overcome in the presence of small amounts of PAA. The isobologram of the ID50s for ts6 in the presence of both drugs indicates that the decrease in amount of 2'NDG required to inhibit plaque formation by 50% in the presence of PAA is greater than would be expected for an additive relationship (Fig. 3). In the presence of 1 Ag of PAA per ml, only 4.4 pag of 2'NDG per ml is required to inhibit plaque formation by 50% compared to 18.0 ug/ml with 2' NDG alone. For the purposes of this study, synergism is defined to occur when the concentration of drug that produces 50% inhibition is reduced to one-fourth of the drug concentration required when acting alone (24). By this definition 2'NDG and PAA are able to act synergistically to overcome the resistance to 2'NDG exhibited by ts6. The resistance mutations to these two drugs occur in physically distinct regions of the viral DNA polymerase locus. This indicates that these two drugs can act synergistically to inhibit viral DNA polymerase, probably by their interaction with distinct regions of the viral polymerase enzyme. DISCUSSION The ts6 mutation had been physically mapped to the viral DNA polymerase locus and this mutation has been associated with a thermolabile HSV DNA polymerase activity (5, 7). In this report we establish that the physical location of the ts6 mutation is either identical or closely linked to the Proc. NatL Acad. Sci. USA 81 (1984) 1559 resistance mutation for 2'NDG. The ts6 mutant is markedly resistant to 2'NDG, and correction of the ts6 mutation by insertion of a 2.2-kbp region of DNA sequences extending from the Bgi II i-d site to the BamHI h'-j' site (map units, ) also results in recombinants that are sensitive to 2'NDG. The mapping limits for the 2'ndgR_1 mutation are identical to those obtained for the ts6 mutation. An alternative explanation that a "second site" rearrangement of sequences results in intergenic or intragenic suppression of the mutant phenotype is unlikely because of the wide range in the length of the rescuing DNA sequence. This argues against crossovers that result in intragenic suppression. The assertion that the ts6 mutation and the 2'ndgR_1 mutation are identical or very closely linked within the DNA polymerase locus is analogous to the assertion for the tsd9 (strain KOS) and the paar mutation (26, 27). The HSV- 1 tsd9 mutant has a mutation in the structural gene for DNA polymerase, is unable to replicate viral DNA at 38.50C, and is resistant to PAA (8, 26, 27). A revertant that is able to grow at the nonpermissive temperature also becomes sensitive to PAA (26, 27). Physical mapping of the tsd9 mutation 14 / intertypic recombi- by marker rescue in nants indicates that the physical map limits for the tsd9 and the paar_1 mutations are contained in a 2.6-kbp region of DNA sequences extending from the Bgl II o-c site to the Kpn I x-c site (map units, ) (6). This region of DNA sequences also contains acvr_1 and araar_1 mutations (10, 11) and overlaps with the region of DNA defining the 2'ndgR-1 mutation, but the phenotype for resistance to 2'NDG can be physically separated from resistance to the other three drugs. All of these drug resistance mutations taken together are defined by a 3.5-kbp region of DNA within the DNA polymerase locus. Synergy between 2'NDG (referred to as BIOLF-62) and PAA or phosphonoformate has been demonstrated for HSV- 1 and (28). A combination of 2'NDG and ACV did not exhibit synergy in this system. In this report, we have shown that 2'NDG and PAA can interact in a synergistic manner to overcome the resistance of ts6 to inhibition by 2'NDG alone. Synergistic antiviral activity has been observed for araa and PAA acting in combination to inhibit herpes virus replication (29). In addition to the physical mapping studies indicating that the paar_1 and 2'ndgR_1 mutations are defined by different regions of the viral DNA polymerase locus, the demonstration of synergism between PAA and 2'NDG strongly suggests that these drugs interact with different parts of the viral DNA polymerase. An alternative explanation could be that PAA stimulates error-prone viral DNA synthesis, which is more susceptible to internucleotide incorporation or chain termination by 2'NDG-TP. These studies extend the region of DNA sequences in that contain mutations conferring resistance to nucleoside analogs (Fig. 2). The previously described 2.9-kbp region containing the bvdur-1 mutation ( BamHI h'-j' site to EcoRI m-o site; map units, ) and the 2.6-kbp region containing the paar-1, acvr_1, and araar_1 mutations ( BgI II o-c site to Kpn I x-c site; map units, ) are now joined by a 2.2-kbp region containing the 2'ndgR_1 mutation ( Bgl II i-d site to BamHI h'-j' site; map units, ). This extends the region of DNA sequence containing mutations that confer resistance to nucleoside analogs leftward to the HSV- 1 Bgl II i-d site (map units, 39.6) and rightward to the EcoRI m-o site (map units, 42.8). The right-hand limit can be reduced further to the Kpn I x-c site (map units, 41.8) by considering the limits previously used to define an active center on the viral DNA polymerase and where the limits for the paar_1, acvr_1, araar_1, and bvdur-1 mutations overlap (map units, ) (11, 12).

5 1560 Microbiology: Crumpacker et al. The region of DNA extending from the Bgl II i-d site to the Kpn x-c site (map units, ) comprises a 3.5-kbp region of DNA containing all of the drug resistance mutations mapping within the DNA polymerase locus and is in close agreement with the region of DNA sequences determining the potential mrna for the viral DNA polymerase. This is a 4.2- to 4.3-kbp transcript, whose 5' end begins near the BamHI v-r site, spans the Bgl II i-d site, and extends to a 3' end between the BamHI k'-w site and the Kpn I x-c site (L. Holland and M. Levine, personal communication). The fact that resistance mutations can be shown to physically map along the entire length of DNA transcribing this potential mrna suggests that an active center or several active centers of polymerase function are determined by tertiary folding of the entire DNA polymerase polypeptide. A detailed picture of this tertiary folding must await the amino acid sequence analysis of the viral DNA polymerase enzyme or be deduced from the nucleotide base sequence analysis of the viral DNA polymerase gene. We thank Drs. John Subak-Sharpe, Priscilla Schaffer, David Knipe, and Ian Hay for kindly providing stocks of mutant viruses and also thank Drs. Lou Holland and Myron Levine for permission to cite their work prior to publication. We gratefully acknowledge the assistance of Ms. Eileen Poe in the preparation of this manuscript. This work was supported by Contract AI from the Antiviral Substances Program of the National Institute of Allergy and Infectious Disease and National Dental Institute, Grant NIA-1- P01-AG0059 from National Institute of Aging, and a grant from Merck Sharpe & Dohme Research Laboratories. 1. Smith, K. O., Galloway, K. S., Dennell, W. C., Ogilvia, K. K. & Radatus, B. K. (1982) Antimicrob. Agents Chemother. 22, Ashton, W. T., Karkas, J. D., Field, A. K. & Tolman, R. L. (1982) Biochem. Biophys. Res. Commun. 108, Cheng, Y. C., Huang, E. S., Lin, J. C., Mar, E. C., Pagano, J. S., Dutschman, G. E. & Grill, S. P. (1983) Proc. Natl. Acad. Sci. USA 80, Field, A. K., Davies, M. E., DeWitt, C., Perry, H. C., Liou, R., Germershausen, J., Karkas, J. D., Ashton, W. T., Johnson, D. B. R. & Tolman, R. L. (1983) Proc. Natl. Acad. Sci. USA 80, Proc. NatL Acad ScL USA 81 (1984) 5. Chartrand, P., Stow, N. P., Timbury, M. C. & Wilkie, N. M. (1979) J. Virol. 31, Chartrand, P., Crumpacker, C. S., Schaffer, P. A. & Wilkie, N. M. (1980) Virology 103, Hay, J. & Subak-Sharpe, J. H. (1976) J. Gen. Virol. 31, Aron, G. M., Purifoy, D. J. M. & Schaffer, P. A. (1975) J. Virol. 16, Purifoy, D. J. M. & Powell, K. C. (1981) J. Gen. Virol. 54, Crumpacker, C. S., Chartrand, P., Subak-Sharpe, J. H. & Wilkie, N. M. (1980) Virology 105, Crumpacker, C. S., Schnipper, L. E., Kowalsky, P. N. & Sherman, D. M. (1982) J. Infect. Dis. 146, Knopf, K. W., Kaufman, E. R. & Crumpacker, C. S. (1981) J. Virol. 39, Coen, D. M., Furman, P. A., Gelep, P. T. & Schaffer, P. A. (1982) J. Virol. 41, Furman, P. A., Coen, D. M., St. Clair, M. H. & Schaffer, P. A. (1981) J. Virol. 40, Timbury, M. C. (1971) J. Gen. Virol. 13, Timbury, M. C. & Calder, L. (1976) J. Gen. Virol. 30, Jamieson, A. T., Gentry, G. A. & Subak-Sharpe, J. H. (1974) J. Gen. Virol. 24, Stow, N. D. & Wilkie, N. M. (1978) Virology 90, Dubbs, D. R. & Kit, S. (1965) Virology 25, Graham, F. L. & van der Eb, A. I. (1973) Virology 52, Wilkie, N. M. (1976) J. Virol. 20, Cortini, R. & Wilkie, N. M. (1978) J. Gen. Virol. 39, Crumpacker, C. S., Schnipper, L. E., Zaia, J. A. & Levin, M. J. (1979) Antimicrob. Agents Chemother. 15, Jawetz, E. & Gunnison, J. H. (1953) Pharmacol. Rev. 5, Crumpacker, C. S., Schnipper, L. E., Chartrand, P. & Knopf, K. W. (1981) in Antiviral Chemotherapy: Design of Inhibitors of Viral Functions, ed. Gauri, K. K. (Academic, New York), pp Joffre, J. T., Schaffer, P. A. & Parris, D. S. (1977) J. Virol. 23, Purifoy, D. J. M. & Powell, K. L. (1977) J. Virol. 24, Smith, K. O., Galloway, K. S., Ogilvie, K. K. & Cheriyan, U. 0. (1982) Antimicrob. Agents Chemother. 22, Shannon, W. M. & Schabel, R. M. (1980) Pharmacol. Ther. Part B,

The Herpes Simplex Virus Type 2 Alkaline DNase Activity Is Essential for Replication and Growth

The Herpes Simplex Virus Type 2 Alkaline DNase Activity Is Essential for Replication and Growth J. gen. Virol. (1986), 67, 1173-1178. Printed in Great Britain 1173 Key words: HSV-2/DNase activity/dna synthesis~growth The Herpes Simplex Virus Type 2 Alkaline DNase Activity Is Essential for Replication

More information

JOURNAL OF VIROLOGY, Mar. 2000, p Vol. 74, No. 5. Copyright 2000, American Society for Microbiology. All Rights Reserved.

JOURNAL OF VIROLOGY, Mar. 2000, p Vol. 74, No. 5. Copyright 2000, American Society for Microbiology. All Rights Reserved. JOURNAL OF VIROLOGY, Mar. 2000, p. 2107 2120 Vol. 74, No. 5 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Roscovitine, a Specific Inhibitor of Cellular Cyclin-Dependent

More information

Herpes Simplex Virus Mutants Resistant to Arabinosyladenine in the Presence of Deoxycoformycin

Herpes Simplex Virus Mutants Resistant to Arabinosyladenine in the Presence of Deoxycoformycin ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Sept. 1984, p. 382-387 0066-4804/84/090382-06$02.00/0 Copyright 1984, American Society for Microbiology Vol. 26, No. 3 Herpes Simplex Virus Mutants Resistant to Arabinosyladenine

More information

CYTOTOXIC EFFECT OF ACYCLOVIR ON CU TitleMAMMALIAN CELLS TO WHICH HERPESVIRU THYMIDINE KINASE GENE WAS INTRODUCE. TANABE, Kiyoshi; HIRAOKA, Wakako; K

CYTOTOXIC EFFECT OF ACYCLOVIR ON CU TitleMAMMALIAN CELLS TO WHICH HERPESVIRU THYMIDINE KINASE GENE WAS INTRODUCE. TANABE, Kiyoshi; HIRAOKA, Wakako; K CYTOTOXIC EFFECT OF ACYCLOVIR ON CU TitleMAMMALIAN CELLS TO WHICH HERPESVIRU THYMIDINE KINASE GENE WAS INTRODUCE TANABE, Kiyoshi; HIRAOKA, Wakako; K Author(s) Mikinori; SATO, Fumiaki; NARITA, Ta Masahiro

More information

Simplex Virus Type 1 Temperature-sensitive Mutant ts K

Simplex Virus Type 1 Temperature-sensitive Mutant ts K J. gen. Virol. (1984), 65, 859-863. Printed in Great Britain 859 Key words: HSV-1 ts K/marker rescue/vmw 175 Determination of the Sequence Alteration in the DNA of the Herpes Simplex Virus Type 1 Temperature-sensitive

More information

Deoxyribonucleoside Triphosphate Pools in Cells Infected with Deoxypyrimidine Kinaseless Herpes Simplex Virus

Deoxyribonucleoside Triphosphate Pools in Cells Infected with Deoxypyrimidine Kinaseless Herpes Simplex Virus J. gen. ViroL (1976), 3 x, I~5-I23 Printed in Great Britain II5 Deoxyribonucleoside Triphosphate Pools in Cells Infected with Deoxypyrimidine Kinaseless Herpes Simplex Virus By A. T. JAMIESON* AND G. BJURSELL

More information

Plaque Size Phenotype as a Selectable Marker To Generate Vaccinia Virus Recombinants

Plaque Size Phenotype as a Selectable Marker To Generate Vaccinia Virus Recombinants JOURNAL OF VIROLOGY, Feb. 1989, p. 997-1001 0022-538X/89/020997-05$02.00/0 opyright 0 1989, American Society for Microbiology Vol. 63, No. 2 Plaque Size Phenotype as a Selectable Marker To Generate Vaccinia

More information

Genetic Analysis of Temperature-Sensitive Mutants Which Define the Genes for the Major Herpes Simplex Virus Type

Genetic Analysis of Temperature-Sensitive Mutants Which Define the Genes for the Major Herpes Simplex Virus Type JOURNAL OF VIROLOGY, Jan. 983, p. 343-353 00-538X/83/00343-$0.00/0 Copyright C 983, American Society for Microbiology Vol. 45, No. Genetic Analysis of Temperature-Sensitive Mutants Which Define the Genes

More information

polymerase involved in substrate and drug recognition

polymerase involved in substrate and drug recognition Proc. Natl. Acad. Sci. USA Vol. 85, pp. 6672-6676, September 1988 Biochemistry Identification of amino acids in herpes simplex virus DNA polymerase involved in substrate and drug recognition (sequencing

More information

Antiherpesvirus Activity of 9-(4-Hydroxy-3-Hydroxymethylbut-1-yl)Guanine

Antiherpesvirus Activity of 9-(4-Hydroxy-3-Hydroxymethylbut-1-yl)Guanine ATIMICROBIAL AGETS AD CHEMOTHERAPY, Aug. 1987, p. 1238-1242 0066-4804/87/081238-05$02.00/0 Copyright D 1987, American Society for Microbiology Vol. 31, o. 8 Antiherpesvirus Activity of 9-(4-Hydroxy-3-Hydroxymethylbut-1-yl)Guanine

More information

Physical Mapping of Herpes Simplex Virus Type 1 Mutations

Physical Mapping of Herpes Simplex Virus Type 1 Mutations JOURNAL OF VIROLOGY, Oct. 1978, p. 182-192 0022-58X/78/0028-0182$02.00/0 Copyright 1978 American Society for Microbiology Vol. 28, No. 1 Printed in U.S.A. Physical Mapping of Herpes Simplex Virus Type

More information

7.012 Problem Set 5. Question 1

7.012 Problem Set 5. Question 1 Name Section 7.012 Problem Set 5 Question 1 While studying the problem of infertility, you attempt to isolate a hypothetical rabbit gene that accounts for the prolific reproduction of rabbits. After much

More information

Genetics of Herpes Simplex Virus

Genetics of Herpes Simplex Virus 0022-202X/84/8301S-0042s$02.00/0 THE.JOURNAL OF NVESTGATVE DERMATOLOGY 83:428-47s 1984 Copyright@ 1984 by The Williams & Wilkins Co. Vol. 83 No.1 Supplement Printed in U. S. A. Genetics of Herpes Simplex

More information

Regulation of enzyme synthesis

Regulation of enzyme synthesis Regulation of enzyme synthesis The lac operon is an example of an inducible operon - it is normally off, but when a molecule called an inducer is present, the operon turns on. The trp operon is an example

More information

Thymidine Plaque Autoradiography of Thymidine Kinase-

Thymidine Plaque Autoradiography of Thymidine Kinase- JOURNAL OF CLINICAL MICROBIOLOGY, Jan. 1983, p. 122-127 0095-1137/83/010122-06$02.00/0 Vol. 17, No. 1 Thymidine Plaque Autoradiography of Thymidine Kinase- Positive and Thymidine Kinase-Negative Herpesviruses

More information

Ultracentrifugal Inoculation

Ultracentrifugal Inoculation INFECTION AND IMMUNITY, Oct. 1980, p. 193-197 0019-9567/80/10-0193/05$02.00/0 Vol. 30, No. 1 Mechanisms of Herpes Simplex Virus Infectivity Enhanced by Ultracentrifugal Inoculation RICHARD B. TENSER* AND

More information

Properties of Deoxythymidine Kinase of a Drug-Resistant

Properties of Deoxythymidine Kinase of a Drug-Resistant JOURNAL OF VIROLOGY, June 1983, p. 901-908 0022-538X/83/060901-08$02.00/0 Copyright 1983, American Society for Microbiology Vol. 46, No. 3 Alterations in Substrate Specificity and Physicochemical Properties

More information

Oliver Schildgen, Sascha Gräper, Johannes Blümel, and Bertfried Matz*

Oliver Schildgen, Sascha Gräper, Johannes Blümel, and Bertfried Matz* JOURNAL OF VIROLOGY, June 2005, p. 7273 7278 Vol. 79, No. 11 0022-538X/05/$08.00 0 doi:10.1128/jvi.79.11.7273 7278.2005 Copyright 2005, American Society for Microbiology. All Rights Reserved. Genome Replication

More information

Chapter 10 Microbial Genetics: New Genes for Old Germs

Chapter 10 Microbial Genetics: New Genes for Old Germs Chapter 10 Microbial Genetics: New Genes for Old Germs Objectives: After reading Chapter Ten, you should understand The structure and complexity of the bacterial chromosome and the significance of plasmids.

More information

Simplex Virus Type 2 Can Confer Resistance to Aphidicolin

Simplex Virus Type 2 Can Confer Resistance to Aphidicolin JOURNAL OF VIROLOGY, Feb. 1987, p. 388-394 0022-538X/87/020388-07$02.00/0 Copyright C) 1987, American Society for Microbiology Vol. 61, No. 2 A Single-Base Change within the DNA Polymerase Locus of Herpes

More information

Intermolecular Recombination of the Herpes Simplex Virus Type 1 Genome Analysed Using Two Strains Differing in Restriction Enzyme Cleavage Sites

Intermolecular Recombination of the Herpes Simplex Virus Type 1 Genome Analysed Using Two Strains Differing in Restriction Enzyme Cleavage Sites J. gen. Virol. (1985), 66, 2659-2670. Printed in Great Britain 2659 Key words: HSV-1/recombination/potymorphism/restriction endonuclease Intermolecular Recombination of the Herpes Simplex Virus Type 1

More information

Shin, Koyano ; Tatsuo, Suzutani ; Itsuro, Yoshida ; Masanobu, Azuma

Shin, Koyano ; Tatsuo, Suzutani ; Itsuro, Yoshida ; Masanobu, Azuma Antimicrobial Agents and Chemotherapy (1996) 40(4):920-923. Analysis of Phosphorylation Pathways of Antiherpesvirus Nucleosides by Varicella-Zoster Virus-Specific Enzymes Shin, Koyano ; Tatsuo, Suzutani

More information

Applicazioni biotecnologiche

Applicazioni biotecnologiche Applicazioni biotecnologiche Analisi forense Sintesi di proteine ricombinanti Restriction Fragment Length Polymorphism (RFLP) Polymorphism (more fully genetic polymorphism) refers to the simultaneous occurrence

More information

Can have defects in any of the steps in the synthesis of arginine. With arginine in the medium, all arg mutants can grow on minimal medium.

Can have defects in any of the steps in the synthesis of arginine. With arginine in the medium, all arg mutants can grow on minimal medium. Molecular Biology I Biochemistry studying a single component in an organism Genetics studying an organism without that component Biochemical Genetics Look at the Arginine biosynthetic pathway: A B C Arginine

More information

A method for identifying the viral genes required for herpesvirus DNA replication

A method for identifying the viral genes required for herpesvirus DNA replication Proc. Natl. Acad. Sci. USA Vol. 83, pp. 9094-9098, December 1986 Genetics A method for identifying the viral genes required for herpesvirus DNA replication (plasmid transfection/transient assay/herpes

More information

Unit 2: Metabolism and Survival Sub-Topic (2.7) Genetic Control of Metabolism (2.8) Ethical considerations in the use of microorganisms

Unit 2: Metabolism and Survival Sub-Topic (2.7) Genetic Control of Metabolism (2.8) Ethical considerations in the use of microorganisms Unit 2: Metabolism and Survival Sub-Topic (2.7) Genetic Control of Metabolism (2.8) Ethical considerations in the use of microorganisms Duncanrig Secondary JHM&MHC 2015 Page 1 of 18 On completion of this

More information

Analysis of thymidine kinase mutations conferring acyclovir resistance in herpes. simplex type 1 recombinant viruses ACCEPTED

Analysis of thymidine kinase mutations conferring acyclovir resistance in herpes. simplex type 1 recombinant viruses ACCEPTED AAC Accepts, published online ahead of print on 18 September 2006 Antimicrob. Agents Chemother. doi:10.1128/aac.00889-06 Copyright 2006, American Society for Microbiology and/or the Listed Authors/Institutions.

More information

mrna- and DNA-Directed Synthesis of Herpes Simplex Virus-Coded Exonuclease in Xenopus laevis Oocytes

mrna- and DNA-Directed Synthesis of Herpes Simplex Virus-Coded Exonuclease in Xenopus laevis Oocytes JOURNAL OF VIROLOGY, Aug. 1982, p. 386-394 22-538X/82/8386-9$2./ Vol. 43, No. 2 mrna- and DNA-Directed Synthesis of Herpes Simplex Virus-Coded Exonuclease in Xenopus laevis Oocytes CHRIS M. PRESTON* AND

More information

Lecture 1. Basic Definitions and Nucleic Acids. Basic Definitions you should already know

Lecture 1. Basic Definitions and Nucleic Acids. Basic Definitions you should already know Lecture 1. Basic Definitions and Nucleic Acids Basic Definitions you should already know apple DNA: Deoxyribonucleic Acid apple RNA: Ribonucleic Acid apple mrna: messenger RNA: contains the genetic information(coding

More information

Mutation Spectra of Herpes Simplex Virus Type 1 Thymidine Kinase Mutants

Mutation Spectra of Herpes Simplex Virus Type 1 Thymidine Kinase Mutants JOURNAL OF VIROLOGY, June 2002, p. 5822 5828 Vol. 76, No. 11 0022-538X/02/$04.00 0 DOI: 10.1128/JVI.76.11.5822 5828.2002 Copyright 2002, American Society for Microbiology. All Rights Reserved. Mutation

More information

Lecture 8: Transgenic Model Systems and RNAi

Lecture 8: Transgenic Model Systems and RNAi Lecture 8: Transgenic Model Systems and RNAi I. Model systems 1. Caenorhabditis elegans Caenorhabditis elegans is a microscopic (~1 mm) nematode (roundworm) that normally lives in soil. It has become one

More information

GENETICS - CLUTCH CH.5 GENETICS OF BACTERIA AND VIRUSES.

GENETICS - CLUTCH CH.5 GENETICS OF BACTERIA AND VIRUSES. !! www.clutchprep.com CONCEPT: WORKING WITH MICROORGANISMS Bacteria are easy to with in a laboratory setting They are fast dividing, take up little space, and are easily grown in a lab - Plating is when

More information

Origin of Thymidine Kinase in Adenovirus-Infected Human Cell Lines

Origin of Thymidine Kinase in Adenovirus-Infected Human Cell Lines JOURNAL OF VIROLOGY, Apr. 1970, p. 446-450 Copyright ( 1970 American Society for Microbiology Vol. 5, No. 4 Printed in U.S.A. Origin of Thymidine Kinase in Adenovirus-Infected Human Cell Lines SAUL KIT,

More information

Inhibition of Herpesvirus hominis Replication by Human Interferon

Inhibition of Herpesvirus hominis Replication by Human Interferon INFECTION AND IMMUNITY, July 1975, p. 104-108 Copyright 0 1975 American Society for Microbiology Vol. 12, No. 1 Printed in U.S.A. Inhibition of Herpesvirus hominis Replication by Human Interferon LUCY

More information

Adenovirus Titration Kit

Adenovirus Titration Kit Adenovirus Titration Kit Catalog # LF-RK0001(1 kit) Immunostaining method for Quantitative Detection of Adenovirus For research use only Not for diagnostic or therapeutic procedures AbFrontier Science

More information

Restriction Enzymes (Site-Specific Endonuclease) Enzymes that recognize and cleave dsdna in a highly sequence specific manner.

Restriction Enzymes (Site-Specific Endonuclease) Enzymes that recognize and cleave dsdna in a highly sequence specific manner. Enzymes Restriction Enzymes (Site-Specific Endonuclease) Enzymes that recognize and cleave dsdna in a highly sequence specific manner. Generally recognize an inverted repeat sequence 4, 6, or 8 base pairs

More information

Amplified segment of DNA can be purified from bacteria in sufficient quantity and quality for :

Amplified segment of DNA can be purified from bacteria in sufficient quantity and quality for : Transformation Insertion of DNA of interest Amplification Amplified segment of DNA can be purified from bacteria in sufficient quantity and quality for : DNA Sequence. Understand relatedness of genes and

More information

Genetic Engineering & Recombinant DNA

Genetic Engineering & Recombinant DNA Genetic Engineering & Recombinant DNA Chapter 10 Copyright The McGraw-Hill Companies, Inc) Permission required for reproduction or display. Applications of Genetic Engineering Basic science vs. Applied

More information

DNA and RNA: Structure and Function. 阮雪芬 May 14, 2004

DNA and RNA: Structure and Function. 阮雪芬 May 14, 2004 DNA and RNA: Structure and Function 阮雪芬 May 14, 2004 Two Fundamental types of nucleic acids participate as genetic molecules DNA: deoxyribonucleic acid Found in the chromosome form in the cell s nucleus

More information

ICP22 and the UL13 Protein Kinase Are both Required for Herpes Simplex Virus-Induced Modification of the Large Subunit of RNA Polymerase II

ICP22 and the UL13 Protein Kinase Are both Required for Herpes Simplex Virus-Induced Modification of the Large Subunit of RNA Polymerase II JOURNAL OF VIROLOGY, July 1999, p. 5593 5604 Vol. 73, No. 7 0022-538X/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. ICP22 and the UL13 Protein Kinase Are both Required

More information

The 5 end problem. 3 5 Now what? RNA primers. DNA template. elongate. excise primers, elongate, ligate

The 5 end problem. 3 5 Now what? RNA primers. DNA template. elongate. excise primers, elongate, ligate 1 2 3 DNA Replication Viruses must replicate their genomes to make new progeny This always requires expression of at least one virus protein, sometimes many (hence always delayed after infection) DNA is

More information

Name 10 Molecular Biology of the Gene Test Date Study Guide You must know: The structure of DNA. The major steps to replication.

Name 10 Molecular Biology of the Gene Test Date Study Guide You must know: The structure of DNA. The major steps to replication. Name 10 Molecular Biology of the Gene Test Date Study Guide You must know: The structure of DNA. The major steps to replication. The difference between replication, transcription, and translation. How

More information

4 Mutant Hunts - To Select or to Screen (Perhaps Even by Brute Force)

4 Mutant Hunts - To Select or to Screen (Perhaps Even by Brute Force) Genetic Techniques for Biological Research Corinne A. Michels Copyright q 2002 John Wiley & Sons, Ltd ISBNs: 0-471-89921-6 (Hardback); 0-470-84662-3 (Electronic) 4 Mutant Hunts - To Select or to Screen

More information

Characterization of Human TK- Cell Lines Transformed to a TK + Phenotype by Herpes Simplex Virus Type 2 DNA

Characterization of Human TK- Cell Lines Transformed to a TK + Phenotype by Herpes Simplex Virus Type 2 DNA J. gen. Virol. (979), 4z, 149-157 Printed in Great Britain 49 Characterization of Human TK- Cell Lines Transformed to a TK + Phenotype by Herpes Simplex Virus Type 2 DNA By S. BACCHETT* AND F. L. GRAHAM

More information

ICH Considerations. Oncolytic Viruses September 17, 2009

ICH Considerations. Oncolytic Viruses September 17, 2009 INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE ICH Considerations Oncolytic Viruses September 17, 2009 1. Introduction Oncolytic viruses

More information

A Modified Digestion-Circularization PCR (DC-PCR) Approach to Detect Hypermutation- Associated DNA Double-Strand Breaks

A Modified Digestion-Circularization PCR (DC-PCR) Approach to Detect Hypermutation- Associated DNA Double-Strand Breaks A Modified Digestion-Circularization PCR (DC-PCR) Approach to Detect Hypermutation- Associated DNA Double-Strand Breaks SARAH K. DICKERSON AND F. NINA PAPAVASILIOU Laboratory of Lymphocyte Biology, The

More information

Quick Review of Protein Synthesis

Quick Review of Protein Synthesis Collin College BIOL. 2401 Quick Review of Protein Synthesis. Proteins and Protein Synthesis Proteins are the molecular units that do most of the work in a cell. They function as molecular catalysts, help

More information

Herpesviral Proteins with the Cell Nucleus

Herpesviral Proteins with the Cell Nucleus JOURNAL OF VIROLOGY, July 1982, p. 314-324 Vol. 43, No. 1 0022-538X/82/070314-11$02.00/0 Definition of a Series of Stages in the Association of Two Herpesviral Proteins with the Cell Nucleus DAVID M. KNIPE*

More information

Technical tips Session 4

Technical tips Session 4 Technical tips Session 4 Biotinylation assay: Streptavidin is a small bacterial protein that binds with high affinity to the vitamin biotin. This streptavidin-biotin combination can be used to link molecules

More information

ICH CONSIDERATIONS Oncolytic Viruses

ICH CONSIDERATIONS Oncolytic Viruses European Medicines Agency Pre-authorisation Evaluation of Medicines for Human Use 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 ICH CONSIDERATIONS Oncolytic Viruses 20 November 2008 EMEA/CHMP/GTWP/607698/2008

More information

Section 14.1 Structure of ribonucleic acid

Section 14.1 Structure of ribonucleic acid Section 14.1 Structure of ribonucleic acid The genetic code Sections of DNA are transcribed onto a single stranded molecule called RNA There are two types of RNA One type copies the genetic code and transfers

More information

induced DNA polymerase and celluiar DNA polymerase a. The results presented here demonstrate that the triphosphate

induced DNA polymerase and celluiar DNA polymerase a. The results presented here demonstrate that the triphosphate JOURNAL OF VIROLOGY, Dec. 1985, p. 846-851 0022-538X/85/120846-06$02.00/0 Copyright C) 1985, American Society for Microbiology Vol. 56, No. 3 Human Cytomegalovirus-Induced DNA Polymerase and Its Interaction

More information

DNA: STRUCTURE AND REPLICATION

DNA: STRUCTURE AND REPLICATION DNA: STRUCTURE AND REPLICATION DNA was known to be a chemical in cells by the end of the nineteenth century, has the capacity to store genetic information, and can be copied and passed from generation

More information

MBioS 503: Section 1 Chromosome, Gene, Translation, & Transcription. Gene Organization. Genome. Objectives: Gene Organization

MBioS 503: Section 1 Chromosome, Gene, Translation, & Transcription. Gene Organization. Genome. Objectives: Gene Organization Overview & Recap of Molecular Biology before the last two sections MBioS 503: Section 1 Chromosome, Gene, Translation, & Transcription Gene Organization Joy Winuthayanon, PhD School of Molecular Biosciences

More information

Higher Human Biology Unit 1: Human Cells Pupils Learning Outcomes

Higher Human Biology Unit 1: Human Cells Pupils Learning Outcomes Higher Human Biology Unit 1: Human Cells Pupils Learning Outcomes 1.1 Division and Differentiation in Human Cells I can state that cellular differentiation is the process by which a cell develops more

More information

from chloroplast DNA were purified, radioactively labeled to the protocol for obtaining greening cultures in a photoautotrophic

from chloroplast DNA were purified, radioactively labeled to the protocol for obtaining greening cultures in a photoautotrophic Proc. Nati. Acad. Sci. USA Vol. 76, No. 5, pp. 2258-2262, May 1979 Biochemistry Transcription program of the chloroplast genome of Euglena gracilis during chloroplast development (restriction endonuclease

More information

Pre-made expression Adenovirus product manual

Pre-made expression Adenovirus product manual Pre-made expression Adenovirus product manual Catalog# Product Name Amounts AVP001 RFP adenovirus AVP002 AVP004 AVP005 AVP011 AVP012 AVP017 AVP010 AVP013 AVP014 AVP015 AVP016 AVP-Null AVP001-PBS AVP002-PBS

More information

TRANSGENIC ANIMALS. transient. stable. - Two methods to produce transgenic animals:

TRANSGENIC ANIMALS. transient. stable. - Two methods to produce transgenic animals: Only for teaching purposes - not for reproduction or sale CELL TRANSFECTION transient stable TRANSGENIC ANIMALS - Two methods to produce transgenic animals: 1- DNA microinjection 2- embryonic stem cell-mediated

More information

Nucleic Acid Structure:

Nucleic Acid Structure: Genetic Information In Microbes: The genetic material of bacteria and plasmids is DNA. Bacterial viruses (bacteriophages or phages) have DNA or RNA as genetic material. The two essential functions of genetic

More information

R1 12 kb R1 4 kb R1. R1 10 kb R1 2 kb R1 4 kb R1

R1 12 kb R1 4 kb R1. R1 10 kb R1 2 kb R1 4 kb R1 Bcor101 Sample questions Midterm 3 1. The maps of the sites for restriction enzyme EcoR1 (R1) in the wild type and mutated cystic fibrosis genes are shown below: Wild Type R1 12 kb R1 4 kb R1 _ _ CF probe

More information

Supplemental Materials and Methods

Supplemental Materials and Methods Supplemental Materials and Methods Proteins and reagents Proteins were purified as described previously: RecA, RecQ, and SSB proteins (Harmon and Kowalczykowski 1998); RecF protein (Morimatsu and Kowalczykowski

More information

Unit IX Problem 3 Genetics: Basic Concepts in Molecular Biology

Unit IX Problem 3 Genetics: Basic Concepts in Molecular Biology Unit IX Problem 3 Genetics: Basic Concepts in Molecular Biology - The central dogma (principle) of molecular biology: Information from DNA are transcribed to mrna which will be further translated to synthesize

More information

ICH Considerations Oncolytic Viruses ONCOLYTIC VIRUSES (EMEA/CHMP/ICH/607698/2008) TRANSMISSION TO CHMP November 2008

ICH Considerations Oncolytic Viruses ONCOLYTIC VIRUSES (EMEA/CHMP/ICH/607698/2008) TRANSMISSION TO CHMP November 2008 European Medicines Agency October 2009 EMEA/CHMP/ICH/607698/2008 ICH Considerations Oncolytic Viruses ONCOLYTIC VIRUSES (EMEA/CHMP/ICH/607698/2008) TRANSMISSION TO CHMP November 2008 TRANSMISSION TO INTERESTED

More information

All This For Four Letters!?! DNA and Its Role in Heredity

All This For Four Letters!?! DNA and Its Role in Heredity All This For Four Letters!?! DNA and Its Role in Heredity What Is the Evidence that the Gene Is DNA? By the 1920s, it was known that chromosomes consisted of DNA and proteins. A new dye stained DNA and

More information

BSCI410-Liu/Spring 06 Exam #1 Feb. 23, 06

BSCI410-Liu/Spring 06 Exam #1 Feb. 23, 06 Your Name: Your UID# 1. (20 points) Match following mutations with corresponding mutagens (X-RAY, Ds transposon excision, UV, EMS, Proflavin) a) Thymidine dimmers b) Breakage of DNA backbone c) Frameshift

More information

Exam 2 Key - Spring 2008 A#: Please see us if you have any questions!

Exam 2 Key - Spring 2008 A#: Please see us if you have any questions! Page 1 of 5 Exam 2 Key - Spring 2008 A#: Please see us if you have any questions! 1. A mutation in which parts of two nonhomologous chromosomes change places is called a(n) A. translocation. B. transition.

More information

Genetics - Problem Drill 13: The Control of Gene Expression in Prokaryotes

Genetics - Problem Drill 13: The Control of Gene Expression in Prokaryotes Genetics - Problem Drill 13: The Control of Gene Expression in Prokaryotes No. 1 of 10 1. You have a cell where the lac repressor has a mutation that doesn t bind lactose. The cells are cultured in a low-glucose,

More information

Delve AP Biology Lecture 7: 10/30/11 Melissa Ko and Anne Huang

Delve AP Biology Lecture 7: 10/30/11 Melissa Ko and Anne Huang Today s Agenda: I. DNA Structure II. DNA Replication III. DNA Proofreading and Repair IV. The Central Dogma V. Transcription VI. Post-transcriptional Modifications Delve AP Biology Lecture 7: 10/30/11

More information

2. Not (associated) with proteins / histones; Accept does not form chromosomes / chromatin

2. Not (associated) with proteins / histones; Accept does not form chromosomes / chromatin M.(a) (i) Joins nucleotides (to form new strand). Accept: joins sugar and phosphate / forms sugar-phosphate backbone Reject: (DNA polymerase) forms base pairs / hydrogen bonds (ii) (Prokaryotic DNA). Circular

More information

Genetics Lecture 21 Recombinant DNA

Genetics Lecture 21 Recombinant DNA Genetics Lecture 21 Recombinant DNA Recombinant DNA In 1971, a paper published by Kathleen Danna and Daniel Nathans marked the beginning of the recombinant DNA era. The paper described the isolation of

More information

Unit 2 Review: DNA, Protein Synthesis & Enzymes

Unit 2 Review: DNA, Protein Synthesis & Enzymes 1. One of the functions of DNA is to A. secrete vacuoles.. make copies of itself.. join amino acids to each other. D. carry genetic information out of the nucleus. 2. Two sugars found in nucleic acids

More information

4. Analysing genes II Isolate mutants*

4. Analysing genes II Isolate mutants* .. 4. Analysing s II Isolate mutants* Using the mutant to isolate the classify mutants by complementation analysis wild type study phenotype of mutants mutant 1 - use mutant to isolate sequence put individual

More information

Review of Protein (one or more polypeptide) A polypeptide is a long chain of..

Review of Protein (one or more polypeptide) A polypeptide is a long chain of.. Gene expression Review of Protein (one or more polypeptide) A polypeptide is a long chain of.. In a protein, the sequence of amino acid determines its which determines the protein s A protein with an enzymatic

More information

THE HERPES SIMPLEX VIRUS TRANSCRIPTION-ACTIVATING PROTEIN ICP4. ROY H. PERSSON, B.Sc., M.Sc.

THE HERPES SIMPLEX VIRUS TRANSCRIPTION-ACTIVATING PROTEIN ICP4. ROY H. PERSSON, B.Sc., M.Sc. USE OF EXPRESSER CELL LINES TO FUNCTIONALLY qharacterize THE HERPES SIMPLEX VIRUS TRANSCRIPTION-ACTIVATING PROTEIN ICP4 by ROY H. PERSSON, B.Sc., M.Sc. A Thesis Submitted to the School of Graduate Studies

More information

Baculovirus Replication: Purification and identification of the Trichoplusia ni Nuclear Polyhedrosis Virus-induced DNA Polymerase

Baculovirus Replication: Purification and identification of the Trichoplusia ni Nuclear Polyhedrosis Virus-induced DNA Polymerase J. gen. ViroL (1983), 64, 2229-2236. Printed in Great Britain 2229 Key words: baculovirus/dna polymerase/mnpv/bvdu/aphidicolin Baculovirus Replication: Purification and identification of the Trichoplusia

More information

Genetics. Chapter 9 - Microbial Genetics. Chromosome. Genes. Topics - Genetics - Flow of Genetics - Regulation - Mutation - Recombination

Genetics. Chapter 9 - Microbial Genetics. Chromosome. Genes. Topics - Genetics - Flow of Genetics - Regulation - Mutation - Recombination Chapter 9 - Microbial Genetics Topics - Genetics - Flow of Genetics - Regulation - Mutation - Recombination Genetics Genome (The sum total of genetic material of a cell is referred to as the genome.) Chromosome

More information

BACTERIAL GENETICS. How does the DNA in the bacterial cell replicate

BACTERIAL GENETICS. How does the DNA in the bacterial cell replicate BACTERIAL GENETICS Bacterial genetics is the study of gene structure and function in bacteria. Genetics itself is concerned with determining the number, location, and character of the genes of an organism.

More information

ESTABLISHMENT OF OKADAIC ACID RESISTANT CELL CLONES USING CDNA LIBRARY EXPRESSION CLONING

ESTABLISHMENT OF OKADAIC ACID RESISTANT CELL CLONES USING CDNA LIBRARY EXPRESSION CLONING Miami Nature Biotechnology Short Reports TheScientificWorld (2001) 1(S3), 42SR ISSN 1532-2246; DOI 10.1100/tsw.2001.149 ESTABLISHMENT OF OKADAIC ACID RESISTANT CELL CLONES USING CDNA LIBRARY EXPRESSION

More information

Lecture for Wednesday. Dr. Prince BIOL 1408

Lecture for Wednesday. Dr. Prince BIOL 1408 Lecture for Wednesday Dr. Prince BIOL 1408 THE FLOW OF GENETIC INFORMATION FROM DNA TO RNA TO PROTEIN Copyright 2009 Pearson Education, Inc. Genes are expressed as proteins A gene is a segment of DNA that

More information

Dr: RAWIA BADR Associate Professor of Microbiology&Immunology

Dr: RAWIA BADR Associate Professor of Microbiology&Immunology Dr: RAWIA BADR Associate Professor of Microbiology&Immunology Cell culture Commonly refers to the culture of animal cells and tissues, while the more specific term plant tissue.culture is used only for

More information

DNA REPLICATION & BIOTECHNOLOGY Biology Study Review

DNA REPLICATION & BIOTECHNOLOGY Biology Study Review DNA REPLICATION & BIOTECHNOLOGY Biology Study Review DNA DNA is found in, in the nucleus. It controls cellular activity by regulating the production of, which includes It is a very long molecule made up

More information

Transcription. The sugar molecule found in RNA is ribose, rather than the deoxyribose found in DNA.

Transcription. The sugar molecule found in RNA is ribose, rather than the deoxyribose found in DNA. Transcription RNA (ribonucleic acid) is a key intermediary between a DNA sequence and a polypeptide. RNA is an informational polynucleotide similar to DNA, but it differs from DNA in three ways: RNA generally

More information

Chapter 8. Microbial Genetics. Lectures prepared by Christine L. Case. Copyright 2010 Pearson Education, Inc.

Chapter 8. Microbial Genetics. Lectures prepared by Christine L. Case. Copyright 2010 Pearson Education, Inc. Chapter 8 Microbial Genetics Lectures prepared by Christine L. Case Structure and Function of Genetic Material Learning Objectives 8-1 Define genetics, genome, chromosome, gene, genetic code, genotype,

More information

d. reading a DNA strand and making a complementary messenger RNA

d. reading a DNA strand and making a complementary messenger RNA Biol/ MBios 301 (General Genetics) Spring 2003 Second Midterm Examination A (100 points possible) Key April 1, 2003 10 Multiple Choice Questions-4 pts. each (Choose the best answer) 1. Transcription involves:

More information

MUTANT: A mutant is a strain that has suffered a mutation and exhibits a different phenotype from the parental strain.

MUTANT: A mutant is a strain that has suffered a mutation and exhibits a different phenotype from the parental strain. OUTLINE OF GENETICS LECTURE #1 A. TERMS PHENOTYPE: Phenotype refers to the observable properties of an organism, such as morphology, growth rate, ability to grow under different conditions or media. For

More information

The enzymological basis for resistance of herpesvirus DNA polymerase mutants to acyclovir: Relationship to the structure of -like DNA polymerases

The enzymological basis for resistance of herpesvirus DNA polymerase mutants to acyclovir: Relationship to the structure of -like DNA polymerases Proc. Natl. Acad. Sci. USA Vol. 96, pp. 447 452, January 1999 Biochemistry The enzymological basis for resistance of herpesvirus DNA polymerase mutants to acyclovir: Relationship to the structure of -like

More information

Before starting, write your name on the top of each page Make sure you have all pages

Before starting, write your name on the top of each page Make sure you have all pages Biology 105: Introduction to Genetics Name Student ID Before starting, write your name on the top of each page Make sure you have all pages You can use the back-side of the pages for scratch, but we will

More information

BIOLOGY - CLUTCH CH.20 - BIOTECHNOLOGY.

BIOLOGY - CLUTCH CH.20 - BIOTECHNOLOGY. !! www.clutchprep.com CONCEPT: DNA CLONING DNA cloning is a technique that inserts a foreign gene into a living host to replicate the gene and produce gene products. Transformation the process by which

More information

Transcription from the BamHI J Fragment of Herpes Simplex

Transcription from the BamHI J Fragment of Herpes Simplex JOURNAL OF VIROLOGY, July 1983, P. 238-243 0022-538X/83/070238-06$02.00/0 Copyright 1983, American Society for Microbiology Vol. 47, No. 1 Transcription from the BamHI J Fragment of Herpes Simplex Virus

More information

Requirement for a Functional int Product in Temperature Inductions of

Requirement for a Functional int Product in Temperature Inductions of JOURNAL OF VIROLOGY, SePt. 1970, p. 320-325 Vol. 6, No. 3 Copyright 1970 American Society for Microbiology Prinited in U.S.A. Requirement for a Functional int Product in Temperature Inductions of Prophage

More information

1 R21 AI A1 2 VMD HALFORD, W

1 R21 AI A1 2 VMD HALFORD, W 1 R21 AI081072-01A1 2 VMD 1R21AI081072-01A1 ILLIAM RESUME AND SUMMARY OF DISCUSSION: The proposed study is to develop safe and effective live attenuated vaccines against herpes simplex virus 2 by using

More information

BIOLOGY 205 Midterm II - 19 February Each of the following statements are correct regarding Eukaryotic genes and genomes EXCEPT?

BIOLOGY 205 Midterm II - 19 February Each of the following statements are correct regarding Eukaryotic genes and genomes EXCEPT? BIOLOGY 205 Midterm II - 19 February 1999 Name Multiple choice questions 4 points each (Best 12 out of 13). 1. Each of the following statements are correct regarding Eukaryotic genes and genomes EXCEPT?

More information

Information transfer between duplicated chromosomal sequences in mammalian cells involves contiguous regions of DNA

Information transfer between duplicated chromosomal sequences in mammalian cells involves contiguous regions of DNA Proc. Nati. Acad. Sci. USA Vol. 83, pp. 1802-1806, March 1986 Genetics Information transfer between duplicated chromosomal sequences in mammalian cells involves contiguous regions of DNA (homologous recombination/gene

More information

Module 6 Microbial Genetics. Chapter 8

Module 6 Microbial Genetics. Chapter 8 Module 6 Microbial Genetics Chapter 8 Structure and function of the genetic material Genetics science of o Study of what genes are, how they determine the characteristics of an organism, how they carry

More information

7.1 Techniques for Producing and Analyzing DNA. SBI4U Ms. Ho-Lau

7.1 Techniques for Producing and Analyzing DNA. SBI4U Ms. Ho-Lau 7.1 Techniques for Producing and Analyzing DNA SBI4U Ms. Ho-Lau What is Biotechnology? From Merriam-Webster: the manipulation of living organisms or their components to produce useful usually commercial

More information

A Preliminary Study on the Molecular Identification of Herpes Simplex Virus Type 1 in Iranian Population

A Preliminary Study on the Molecular Identification of Herpes Simplex Virus Type 1 in Iranian Population Journal of Sciences, Islamic Republic of Iran 16(2): 125-129 (2005) University of Tehran, ISSN 1016-1104 http://jsciences.ut.ac.ir A Preliminary Study on the Molecular Identification of Herpes Simplex

More information

Antiviral Chemistry & Chemotherapy 19:15 24

Antiviral Chemistry & Chemotherapy 19:15 24 Antiviral Chemistry & Chemotherapy 19:1 24 Original article Antiviral activities and phosphorylation of halo- 2 -deoxyuridines and N methanocarbathymidine in cells infected with vaccinia virus Donald F

More information

DNA and Biotechnology Form of DNA Form of DNA Form of DNA Form of DNA Replication of DNA Replication of DNA

DNA and Biotechnology Form of DNA Form of DNA Form of DNA Form of DNA Replication of DNA Replication of DNA 21 DNA and Biotechnology DNA and Biotechnology OUTLINE: Replication of DNA Gene Expression Mutations Regulating Gene Activity Genetic Engineering Genomics DNA (deoxyribonucleic acid) Double-stranded molecule

More information

Antonio L. Amelio, Nicole V. Giordani, Nicole J. Kubat, Jerome E. O Neil, and David C. Bloom*

Antonio L. Amelio, Nicole V. Giordani, Nicole J. Kubat, Jerome E. O Neil, and David C. Bloom* JOURNAL OF VIROLOGY, Feb. 2006, p. 2063 2068 Vol. 80, No. 4 0022-538X/06/$08.00 0 doi:10.1128/jvi.80.4.2063 2068.2006 Copyright 2006, American Society for Microbiology. All Rights Reserved. Deacetylation

More information

Guided Notes Unit 5: Molecular Genetics

Guided Notes Unit 5: Molecular Genetics Name: Date: Block: Chapter 8: From DNA to Protein I. Concept 8.4: Transcription a. Central Dogma of Molecular Biology i. Information flows in one direction: ii. How? Guided Notes Unit 5: Molecular Genetics

More information