A Single Hamster PrP Amino Acid Blocks Conversion to Protease-Resistant PrP in Scrapie-Infected Mouse Neuroblastoma Cells

Size: px
Start display at page:

Download "A Single Hamster PrP Amino Acid Blocks Conversion to Protease-Resistant PrP in Scrapie-Infected Mouse Neuroblastoma Cells"

Transcription

1 JOURNAL OF VIROLOGY, Dec. 1995, p Vol. 69, No X/95/$ Copyright 1995, American Society for Microbiology A Single Hamster PrP Amino Acid Blocks Conversion to Protease-Resistant PrP in Scrapie-Infected Mouse Neuroblastoma Cells SUZETTE A. PRIOLA* AND BRUCE CHESEBRO Laboratory of Persistent Viral Diseases, National Institute of Allergy and Infectious Diseases, Rocky Mountain Laboratories, Hamilton, Montana Received 25 May 1995/Accepted 5 September 1995 Neurodegeneration caused by the transmissible spongiform encephalopathies is associated with the conversion of a normal host protein, PrP-sen, into an abnormal aggregated protease-resistant form, PrP-res. In scrapie-infected mouse neuroblastoma cells, mouse PrP-sen is converted into PrP-res but recombinant hamster PrP-sen expressed in these cells is not. In the present studies, recombinant hamster/mouse PrP-sen molecules were expressed in these scrapie-infected cells to define specific PrP amino acid residues critical for the conversion to PrP-res. The results showed that homology to the region of mouse PrP-sen from amino acid residues 112 to 138 was required for conversion of recombinant PrP-sen to PrP-res in scrapie-infected mouse cells. Furthermore, a single hamster-specific PrP amino acid at residue 138 could inhibit the conversion of the recombinant PrP-sen into PrP-res. The data are consistent with studies in humans which show that specific amino acid residue changes within PrP can influence disease pathogenesis and transmission of transmissible spongiform encephalopathies across species barriers. Scrapie in sheep, bovine spongiform encephalopathy in cattle, and kuru, Gerstmann-Sträussler-Scheinker syndrome, and Creutzfeldt-Jakob disease in humans are members of a group of diseases known as the transmissible spongiform encephalopathies (TSE). The exact nature of the etiologic agent in TSE is unknown. The unusual resistance of the agent to inactivation by irradiation, heat, and other harsh treatments led to the proposal that the agent is an infectious, self-replicating protein (15, 32). The brains of scrapie-infected animals contain a protease-resistant protein, PrP-res (27), which has been hypothesized to be the etiologic agent of TSE (32). Although its precise relationship to the agent is still unclear (1, 19, 37), the importance of PrP-res in the brain pathology associated with TSE diseases is well established (3). The scrapie species barrier is the resistance of one animal species to infection with scrapie agent from another animal species. For example, hamsters inoculated with mouse-adapted strains of scrapie develop disease only after very prolonged incubation periods, and passage of hamster-adapted scrapie strains into mice usually fails to produce disease at all (20 22). The current outbreak of bovine spongiform encephalopathy in Great Britain and concerns that the bovine spongiform encephalopathy agent could cross the species barrier into humans underscores the importance of determining how transmission of scrapie from one species to another can occur. Early experiments showed that genes identical to or linked with the PrP gene could influence resistance to various scrapie strains in mice and sheep (4, 17, 36). Subsequent experiments showed that transgenic mice expressing high levels of the hamster protease-sensitive protein (PrP-sen) were susceptible to infection and disease induction by hamster scrapie (33, 38). These results indicated that PrP molecules were involved in the interspecies transmission of scrapie. One possible explanation is * Corresponding author. Mailing address: Laboratory of Persistent Viral Diseases, NIAID, Rocky Mountain Laboratories, Hamilton, MT Phone: (406) Fax: (406) Electronic mail address: sap@rml.niaid.pc.niaid.nih.gov. that differences between the primary sequence of the hostspecific PrP-sen and the foreign PrP-res molecule in scrapie agent preparations could influence transmission of scrapie across species barriers. This possibility has been supported by studies of transgenic mice expressing chimeric hamster/mouse PrP genes (39) and by the recent finding that species-specific interactions between PrP-sen and PrP-res molecules influence generation of PrP-res in a cell-free system (25). In previous studies with mouse scrapie-infected murine neuroblastoma (Sc -MNB) cells, we showed that expression of mutant or recombinant mouse PrP molecules containing a single hamster PrP-specific methionine at residue 111 could interfere with the conversion of the endogenous mouse PrPsen molecule expressed in Sc -MNB cells to PrP-res (30). We have now expressed a series of mouse/hamster recombinant PrP molecules in these cells and assayed the conversion of the recombinant PrP-sen molecules into PrP-res. Surprisingly, despite their ability to interfere with the conversion of mouse PrP-sen to mouse PrP-res, some of these recombinant PrP-sen molecules were themselves converted into PrP-res. The data indicated that homology with mouse PrP amino acid sequence from residues 112 to 138 was necessary for conversion of the recombinant PrP-sen to PrP-res. Furthermore, a single hamster PrP-specific amino acid at residue 138 could block conversion of the recombinant PrP-sen to PrP-res, whereas a mouse PrP-specific amino acid at residue 138 favored the conversion of the recombinant PrP-sen to PrP-res. MATERIALS AND METHODS Cells. Murine neuroblastoma cells persistently infected with mouse scrapie (Sc -MNB cells) have been described previously (35). These cells express mouse PrP-sen, accumulate mouse PrP-res, and replicate mouse scrapie infectivity (34, 35). Antibodies. The anti-hamster PrP mouse monoclonal antibody 3F4 recognizes an epitope within hamster PrP containing methionines at residues 109 and 112 (2, 18). All of the recombinant PrP molecules used in this study expressed this antibody epitope. The 3F4 mouse monoclonal antibody does not react with mouse PrP, which has leucine and valine at residues 108 and 111. (Hamster PrP has a single amino acid insertion at position 54 and a single amino acid deletion at position 233 as compared with mouse PrP [26, 28]. Therefore, homologous 7754

2 VOL. 69, 1995 SINGLE PrP AMINO ACID BLOCKS CONVERSION TO PrP-res 7755 TABLE 1. A single amino acid change influences the conversion of recombinant PrP-sen to PrP-res Amino acid residue at position b : Clone Background a 109 (108) 112 (111) 139 (138) 155 (154) 170 (169) HaPrP Hamster MET MET MET ASN ASN SP66 Hamster MET MET Ile Tyr Ser SP66-M139 Hamster MET MET MET Tyr Ser SP66-N155 Hamster MET MET Ile ASN Ser SP66-N170 Hamster MET MET Ile Tyr ASN 3F4-positive PrP-res c MoPrP Mouse Leu Val Ile Tyr Ser NA MoPrP-M108/111 Mouse MET MET Ile Tyr Ser MoPrP-M108/M111/M138 Mouse MET MET MET Tyr Ser a Background indicates the species derivation of the recombinant PrP amino acids which are not individually indicated. b The five amino acid residues altered for this study are numbered. Residues in capital letters are hamster PrP specific. Because of a single amino acid deletion in mouse PrP at residue 54 (26, 28), homologous residues between mouse and hamster PrP differ by 1 in their numbering at the positions shown; the residues for mouse PrP are given in parentheses. Boxed residues are associated with a lack of conversion of the recombinant PrP molecule into PrP-res as detected by the monoclonal antibody 3F4. c, 3F4-positive PrP-res;, no 3F4-positive PrP-res; NA, not applicable. mouse and hamster PrP amino acids between these two residues differ by 1 in their numbering.) The anti-prp peptide rabbit polyclonal antibody R.27 was raised to a PrP peptide encompassing amino acid residues 89 to 103 of the mouse PrP molecule and has been described previously (8). The R.27 antibody recognizes both mouse and hamster PrP. Clones. Mouse PrP (MoPrP) mutated to contain the 3F4 epitope and a unique NaeI restriction endonuclease site, MoPrP-M108/M111, and normal hamster PrP (HaPrP) have been described previously (9). Two mouse/hamster PrP chimeras, SP33 and SP40 (see Fig. 2), were derived by utilizing the unique NaeI site within HaPrP and MoPrP-M108/M111 as described previously (30). Additional recombinants were generated with a unique BstEII restriction endonuclease site at nucleotide 659 within the wild-type MoPrP sequence (26). HaPrP does not have this BstEII site. To generate a chimeric PrP molecule with HaPrP sequence between the NaeI-BstEII sites, an NaeI-BstEII fragment derived from HaPrP was generated by PCR mutagenesis of wild-type HaPrP with the HaPrP specific primers 5 -CCAAAAACCAACATGAAGCAGATGGCCGGC GCTGC-3 and 5 -GGTGGTGAGCGTGTGCTGCTT-3. This generated a BstEII site in the HaPrP DNA sequence by changing the A at position 663 to a G. The amino acid sequence remained unchanged. The single-base-pair mutation was confirmed by DNA sequencing and subcloned into SP40. The final chimeric Mo/HaPrP gene (SP67; see Fig. 2) was subcloned into the retroviral expression vector psff (9). A chimeric PrP with HaPrP DNA sequence at the 3 end of PrP was generated by PCR mutagenesis of a wild-type HaPrP cloned into the Bluescript-KS( ) vector (Stratagene), using the HaPrP-specific primer 5 -A AGCAGCACACGGTCACCACC-3 and the Bluescript-specific primer 5 -TGA CCGGCAGCAAAATG-3. This generated the BstEII site as described above. The mutation was confirmed by DNA sequencing and subcloned into SP40 at the BstEII site and a unique NotI site in Bluescript KS( ). The complete Mo/HaPrP chimera (SP66; see Fig. 2) was then subcloned into the psff vector. To mutate single amino acid residues within the 224-bp NaeI-BstEII fragment of MoPrP, a set of 10 overlapping oligonucleotides was made. These oligonucleotides spanned the region of MoPrP from nucleotides 436 to 660. A pair of oligonucleotides in which the C at nucleotide 573 was replaced with a G, changing an isoleucine to a methionine, was made. These mutant oligonucleotides were then mixed in equimolar ratios with eight nonmutated oligonucleotides, treated with kinase, and ligated as described previously (10) into a Bluescript KS( ) vector containing a mouse PrP gene from which the NaeI-BstEII fragment had been deleted. The resultant 224-bp fragment contained a 5 NaeI blunt end, a3 BstEII end, and the MoPrP amino acid sequence except for the HaPrPspecific methionine at position 138. The mutation was confirmed by DNA sequencing and subcloned into the NaeI-BstEII sites of SP66 (SP66-M139; see Fig. 4). The same protocol was used to mutate the MoPrP amino acid residues at 155 (tyrosine to asparagine) and 170 (serine to asparagine) to their HaPrP equivalents. These clones are identical to hamster PrP except for two mouse PrP amino acids in the NaeI-BstEII fragment and are shown in Table 1. Infection and analysis of Sc -MNB cells expressing chimeric PrPs. Expression of recombinant mouse/hamster PrP molecules in Sc -MNB cells by using the retroviral expression vector psff and the assay of these cells for expression of PrP-res have been described previously (9, 30). PrP-res derived from exogenous chimeric PrP molecules was detected with the mouse monoclonal antibody 3F4 (18), while PrP-res derived from both endogenous and exogenous PrP molecules was detected with the anti-prp peptide rabbit polyclonal antiserum R.27 (8). Each experiment was repeated at least twice. The Western blot (immunoblot) was developed with the enhanced chemiluminescence reagent system (ECL; Amersham) as specified by the manufacturer. Nonspecific background derived from the ECL development procedure was not uncommon and accounted for the regional background variation observed in the Western blots. Radioimmunoprecipitation of PrP-sen. The expression level of the chimeric PrP-sen molecules in Sc -MNB cells was assayed by immunoprecipitation of radiolabeled cell lysates and by live-cell membrane immunofluorescence with the 3F4 antibody as described previously (5, 30). RESULTS Specificity of conversion of PrP-sen to PrP-res in Sc -MNB cells. HaPrP and MoPrP-M108/M111 were expressed in Sc - MNB cells, and the cells were assayed for the presence of 3F4-reactive PrP-res. The endogenous MoPrP in Sc -MNB cells does not contain the 3F4 antibody epitope and does not react with the 3F4 antibody. Therefore, any 3F4-reactive PrP can be derived only from the exogenous recombinant PrP molecule. Similar levels of recombinant PrP-sen were synthesized by the HaPrP and MoPrP-M108/M111 recombinants (Fig. 1A). As we have described previously, expression of either HaPrP or MoPrP-M108/M111 in Sc -MNB cells interfered with the overall level of expression of PrP-res, as detected by the rabbit polyclonal antiserum R.27 (30). However, when PrP-res was assayed with monoclonal antibody 3F4, a substantial amount of 3F4-positive PrP-res was found in cells which expressed MoPrP-M108/M111, whereas none was detected in cells which expressed HaPrP (Fig. 1B). Therefore, both the mutant MoPrP-M108/M111 and HaPrP blocked the generation of PrP-res from the endogenous MoPrP, but only MoPrP-M108/M111 was itself incorporated into PrP-res. Homology in a region of MoPrP from amino acid residues 112 to 187 is required for the conversion of PrP-sen to PrP-res. To determine the region of PrP which was essential for conversion of the exogenous PrP-sen to PrP-res, several recombinants between MoPrP-M108/M111 and HaPrP (Fig. 2) were expressed in Sc -MNB cells. These recombinants expressed PrP-sen at similar levels (Fig. 3A). However, when PrP-res was assayed with monoclonal antibody 3F4, only MoPrP-M108/ M111, SP40, and SP66 were converted into PrP-res (Fig. 3B). As summarized in Fig. 2, the only MoPrP DNA sequence common to all three of the constructs which converted into PrP-res was a 224-bp NaeI-BstEII fragment. This sequence encodes amino acid residues 112 to 187 of MoPrP. Amino acid residue 139 influences the conversion of PrP-sen to PrP-res. Mouse PrP and hamster PrP differ at only 3 of the 75 amino acid residues encoded by the NaeI-BstEII fragment (Fig. 2) (26). Therefore, we changed each of these amino acids separately to test their influence on the conversion of PrP-sen to PrP-res (Table 1). Conversion of the mutant PrP into PrP-

3 7756 PRIOLA AND CHESEBRO J. VIROL. FIG. 1. The conversion of PrP-sen to PrP-res in Sc -MNB cells is species specific. Shown is analysis of PrP-sen (A) or PrP-res (B) in Sc -MNB cells expressing MoPrP-M108/M111 and HaPrP. (A) PrP-sen radioimmunoprecipitated with the 3F4 mouse monoclonal antibody. The sizes (in kilodaltons) of the specific PrP-sen species are indicated on the left. The 60-kDa HaPrP molecule has been described previously (31). (B) Western blot analysis of 3F4-reactive PrP-res. The immunoblot was developed with the mouse monoclonal antibody 3F4. PrP-res-specific bands are indicated by the arrows and brackets on the left. Molecular mass markers (in kilodaltons) are shown on the right. Both panels are from the same experiment. Lanes in each panel are from the same gel exposed for a constant time. res was unaffected when residue 155 was altered from tyrosine to asparagine (SP66-N155) or when residue 170 was altered from serine to asparagine (SP66-N170) (Fig. 4B). However, when residue 139 was altered from isoleucine to methionine (SP66-M139), the level of 3F4-reactive PrP-res decreased significantly (Fig. 4B) despite high levels of SP66-M139 expression (Fig. 4A). The data, summarized in Table 1, indicated that homology at residue 139 was critical in the conversion of PrPsen to PrP-res. In a reciprocal manner, we tested the effect of this change in the context of the MoPrP amino acid sequence. Residue 138 in MoPrP-M108/M111 (homologous to residue 139 in HaPrP and FIG. 3. Conversion of chimeric Mo/HaPrP-sen to PrP-res in Sc -MNB cells is dependent on the presence of specific MoPrP protein sequence. Shown is analysis of PrP-sen by radioimmunoprecipitation with the 3F4 antibody (A) or PrP-res by immunoblot with the 3F4 antibody (B) in Sc -MNB cells expressing MoPrP-M108/M111, a series of Mo/HaPrP chimeras (SP33 through SP66), the envelope gene of Friend murine leukemia virus (FE), or no construct (mock). The FE gene encodes a nonspecific membrane glycoprotein expressed in the psff vector (30) and was used in these experiments as a negative control. Both panels are from the same experiment, and each panel was derived from a single gel. Exposure time for panel A was 7 days. SP66-M139) was changed from isoleucine to methionine. The resultant recombinant, MoPrP-M108/M111/M138, contained HaPrP-derived amino acid residues only at positions 108 and 111 (i.e., the 3F4 epitope) and at position 138 (Table 1). Recombinants MoPrP-M108/M111 and MoPrP-M108/M111/ M138, which differed by only one amino acid, were expressed at equivalent levels in Sc -MNB cells (Fig. 5A). However, only MoPrP-M108/M111 was converted into PrP-res. Little or no 3F4-reactive PrP-res was detected in cells which expressed the MoPrP-M108/M111/M138 construct (Fig. 5B). The data supported the above results with clone SP66-M139 (Table 1) and demonstrated that the HaPrP-specific methionine at position FIG. 2. Recombinant mouse and hamster PrPs. DNA sequence derived from MoPrP is shown by the solid bars, while DNA sequence derived from HaPrP is shown by the open bars. The tick marks represent amino acid differences between mouse PrP and hamster PrP. Clone names are given on the left. The two hamster PrP-specific methionine residues involved in 3F4 epitope reactivity are indicated by an asterisk. The NaeI and BstEII cloning sites used to generate the clones are shown. Conversion of the designated clone into PrP-res in Sc -MNB cells is summarized on the right:, 3F4-positive PrP-res;, no 3F4-positive PrP-res. FIG. 4. A single amino acid residue change in PrP-sen affects the conversion of PrP-sen to PrP-res in Sc -MNB cells. Shown is analysis of PrP-sen by radioimmunoprecipitation with the 3F4 antibody (A) or PrP-res by immunoblot with the 3F4 monoclonal antibody (B) in Sc -MNB cells expressing recombinant Mo/HaPrP chimeras which differ at a single amino acid residue. The parent clone, SP66, contained only three MoPrP-derived amino acid residues, while clones SP66-M139, SP66-N155, and SP66-N170 contained only two MoPrPderived amino acid residues (Table 1). The data are from a single experiment, and each panel represents data from a single gel. Exposure time for panel A was 24 h. Molecular mass markers (in kilodaltons) on the right are for panel B only.

4 VOL. 69, 1995 SINGLE PrP AMINO ACID BLOCKS CONVERSION TO PrP-res 7757 FIG. 5. MoPrP amino acid residue 138 is important in the conversion of PrP-sen to PrP-res in Sc -MNB cells. All data are from the same experiment. Shown is analysis of PrP-sen by radioimmunoprecipitation with the 3F4 antibody (A) or PrP-res by immunoblot analysis with the 3F4 antibody (B) in Sc -MNB cells expressing the MoPrP recombinants MoPrP-M108/M111 or MoPrP-M108/ M111/M138. These constructs differ by a single amino acid residue at position 138 in the MoPrP gene (Table 1). Molecular mass markers (in kilodaltons) on the right are for panel B only. 138 in MoPrP or position 139 in SP66-M139 prevented conversion of the mutant PrP-sen to the PrP-res form. DISCUSSION Expression of recombinant heterologous PrP molecules in mouse scrapie-infected murine neuroblastoma cells has enabled us to define an amino acid in the PrP gene sequence which has a significant effect on the conversion of PrP-sen to PrP-res. A previous study by Scott et al. had mapped the specific amino acids important in the conversion of PrP-sen into PrP-res to two regions of the PrP-sen molecule which encompassed over 100 amino acid residues (40). Recently, we defined a single region of hamster PrP extending from residues 109 to 188 that is important in the conversion of hamster PrP-sen to hamster PrP-res in a cell-free conversion system (25). Transgenic mouse models had also indicated that this region was important in the susceptibility of the transgenic mice to hamster scrapie (39). In this study, we have demonstrated not only that homology in a single region of mouse PrP from amino acid residues 112 to 138 is important in the conversion of mouse PrP-sen to mouse PrP-res but also that residue 138 alone is capable of modulating the conversion process. Consistent with our finding that homology with the primary amino acid sequence of PrP in this region is important in the formation of PrP-res, several mutations in the PrP gene associated with naturally occurring human TSE, any one of which can affect the disease phenotype, are located within the region of PrP from residues 112 to 187. Within the human PrP gene, mutation of an alanine to a valine at residue 117 is associated with a dementing form of Gerstmann-Sträussler-Scheinker syndrome (16), a change from a methionine to a valine at position 129 predisposes an individual to Creûtzfeldt-Jakob disease (29), an amber mutation at residue 145 is associated with an atypical form of Gerstmann-Sträuŝsler-Scheinker syndrome (23), while a change from an asparagine to an aspartic acid at codon 178 has been associated with both Creutzfeldt- Jakob disease and fatal familial insomnia (13, 14). Our data are the first to directly demonstrate that a single amino acid change within this region of PrP can have a significant effect on the process by which PrP-sen is converted into PrP-res, which may in turn have a profound effect on TSE pathogenesis. Previous results showed that in mouse scrapie-infected cells, recombinant PrP molecules with hamster-specific methionine residues at positions 108 and 111 blocked the conversion of normal MoPrP-sen to PrP-res (30). The experiments in the present study show that these recombinant PrP molecules were themselves converted to PrP-res (Fig. 1; MoPrP-M108/M111). Thus, recombinant PrP molecules with methionines at 108 and 111 appeared to competitively inhibit incorporation of normal MoPrP into PrP-res. Our data are similar to results from in vivo studies of human PrP amyloid, which have shown that in heterozygous Gerstmann-Sträussler-Scheinker syndrome patients expressing PrP molecules with a methionine or valine at codon 129, only the PrP molecules with a valine at 129 were incorporated into PrP amyloid fibrils (41). Taken together, the data strongly suggest that depending on the homology at critical residues in PrP, competitive interactions between PrP molecules can lead to preferential incorporation of one type of PrP molecule into the growing PrP-res fibril (Fig. 6B). This further suggests that the two different PrP molecules can compete for a common site in the conversion mechanism. Recent in vitro data strongly suggest that this conversion site is either within PrP-res itself or within a molecule tightly associated with PrPres, such as a glycosaminoglycan (6, 7, 24). We also demonstrated that PrP molecules with methionines at codons 108, 111, and 138, in addition to blocking the conversion of MoPrP-sen to MoPrP-res (30), are unable to themselves be converted to PrP-res (Fig. 1, HaPrP; Fig. 5, MoPrP- M108/M111/M138). The methionine at 138 is essential for this effect (Fig. 5). By inhibiting the formation of PrP-res, a PrP gene encoding such recombinant molecules might act to increase resistance to scrapie infection in vivo. Since methionines are present at these positions in normal HaPrP-sen, they may be responsible for the scrapie species barrier which leads to the extended disease incubation times observed when hamsters are inoculated with mouse scrapie agent (20 22). As shown in recent cell-free studies, this species barrier probably involves interactions between heterologous PrP molecules (25) and may FIG. 6. Effects of heterologous PrP-sen molecules on PrP-res accumulation. Shown is a model for the effect of expression of exogenous PrP-sen molecules on PrP-res accumulation in cells persistently infected with mouse scrapie. (A) No inhibition. Conversion of PrP-sen (open circles) to PrP-res (open squares) can occur. (B) Homologous and nonhomologous (striped circles) PrP-sen molecules compete for a common binding site on the growing PrP-res polymer. The nonhomologous PrP-sen can be converted into PrP-res (striped squares), resulting in a decrease in PrP-res derived from the homologous PrP-sen. (C) The nonhomologous PrP-sen (solid circles) cannot be converted to PrP-res and inhibits incorporation of the homologous PrP-sen molecule into PrP-res. PrP-res fibril formation stops, and the amount of PrP-res which accumulates decreases.

5 7758 PRIOLA AND CHESEBRO J. VIROL. be broken if enough PrP-sen is converted to PrP-res to overcome the inhibitory effect of interactions between incompatible PrP molecules. This process might take several in vivo passages of the scrapie agent. The species barrier might remain if insufficient PrP-sen were converted to PrP-res to overcome the inhibitory effect of interactions between incompatible PrP molecules or if the PrP-sen molecule could not be utilized in the conversion process at all (Fig. 6C). The fact that a single amino acid change can influence the conversion process in an in vitro tissue culture system supports results of previous cell-free studies with PrP peptides. Even conservative amino acid changes affect the nucleation-dependent polymerization of mixtures of PrP peptides in vitro (11, 12). In Sc -MNB cells, recombinant PrP molecules with a mutation at residue 138 may act in a similar manner by interacting with the endogenous mouse PrP-res molecules made in these cells, reducing nucleation times, and leading to a decrease in the amount of PrP-res which accumulates over time. ACKNOWLEDGMENTS We thank Sylvia Perryman for doing the DNA sequence analysis, Robert Evans for graphics assistance, and Byron Caughey, Kim Hasenkrug, Nancy Ray, and David Kocisko for critical reading of the manuscript. REFERENCES 1. Aiken, J. M., and R. F. Marsh The search for scrapie agent nucleic acid. Microbiol. Rev. 54: Bolton, D. C., S. J. Seligman, G. Bablanian, D. Windsor, L. J. Scala, K. S. Kim, C. M. J. Chen, R. J. Kascsak, and P. E. Bendheim Molecular location of a species-specific epitope on the hamster scrapie agent protein. J. Virol. 65: Bueler, H., A. Aguzzi, A. Sailer, R.-A. Greiner, P. Autenried, M. Aguet, and C. Weissmann Mice devoid of PrP are resistant to scrapie. Cell 73: Carlson, G. A., D. T. Kingsbury, P. A. Goodman, S. Coleman, S. T. Marshall, S. DeArmond, D. Westaway, and S. B. Prusiner Linkage of prion protein and scrapie incubation time genes. Cell 46: Caughey, B., K. Neary, R. Buller, D. Ernst, L. Perry, B. Chesebro, and R. Race Normal and scrapie-associated forms of prion protein differ in their sensitivities to phospholipase and proteases in intact neuroblastoma cells. J. Virol. 64: Caughey, B., and R. E. Race Potent inhibition of scrapie-associated PrP accumulation by Congo red. J. Neurochem. 59: Caughey, B., and G. J. Raymond Sulfated polyanion inhibition of scrapie-associated PrP accumulation in cultured cells. J. Virol. 67: Caughey, B., G. J. Raymond, D. Ernst, and R. E. Race N-terminal truncation of the scrapie-associated form of PrP by lysosomal protease(s): implications regarding the site of conversion of PrP to the protease-resistant state. J. Virol. 65: Chesebro, B., K. Wehrly, B. Caughey, J. Nishio, D. Ernst, and R. Race Foreign PrP expression and scrapie infection in tissue culture cell lines. Dev. Biol. Stand. 80: Chesebro, B., K. Wehrly, J. Nishio, and S. Perryman Macrophagetropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-celltropic isolates: definition of critical amino acids involved in cell tropism. J. Virol. 66: Come, J. H., P. E. Fraser, and P. T. Lansbury, Jr A kinetic model for amyloid formation in the prion diseases: importance of seeding. Proc. Natl. Acad. Sci. USA 90: Come, J. H., and P. T. Lansbury, Jr Predisposition of prion protein homozygotes to Creutzfeldt-Jakob disease can be explained by a nucleationdependent polymerization mechanism. J. Am. Chem. Soc. 116: Goldfarb, L. G., M. Haltia, P. Brown, A. Nieto, J. Kovanen, W. R. McCombie, S. Trapp, and D. C. Gajdusek New mutation in scrapie amyloid precursor gene (at codon 178) in Finnish Creutzfeldt-Jakob kindred. Lancet 337: Goldfarb, L. G., R. B. Petersen, M. Tabaton, P. Brown, A. C. LeBlanc, P. Montagna, P. Cortelli, J. Julien, C. Vital, W. W. Pendelbury, M. Haltia, P. R. Wills, J. J. Hauw, P. E. McKeever, L. Monari, B. Schrank, G. D. Swergold, L. Autilio-Gambetti, D. C. Gajdusek, E. Lugaresi, and P. Gambetti Fatal familial insomnia and familial Creutzfeldt-Jakob disease: disease phenotype determined by a DNA polymorphism. Science 258: Griffith, J. S Self-replication and scrapie. Nature (London) 215: Hsiao, K. K., C. Cass, G. D. Schellenberg, T. Bird, E. Devine-Gage, H. Wisniewski, and S. B. Prusiner A prion protein variant in a family with the telencephalic form of Gerstmann-Straussler-Scheinker syndrome. Neurology 41: Hunter, N., J. Hope, I. McConnell, and A. G. Dickinson Linkage of the scrapie-associated fibril protein (PrP) gene and sinc using congenic mice and restriction fragment length polymorphism analysis. J. Gen. Virol. 68: Kascsak, R. J., R. Rubenstein, P. A. Merz, M. Tonna-DeMasi, R. Fersko, R. I. Carp, H. M. Wisniewski, and H. Diringer Mouse polyclonal and monoclonal antibody to scrapie-associated fibril proteins. J. Virol. 61: Kimberlin, R. H Scrapie and possible relationships with viroids. Semin. Virol. 1: Kimberlin, R. H., S. Cole, and C. A. Walker Temporary and permanent modifications to a single strain of mouse scrapie on transmission to rats and hamsters. J. Gen. Virol. 68: Kimberlin, R. H., and C. A. Walker Evidence that the transmission of one source of scrapie agent to hamsters involves separation of agent strains from a mixture. J. Gen. Virol. 39: Kimberlin, R. H., C. A. Walker, and H. Fraser The genomic identity of different strains of mouse scrapie is expressed in hamsters and preserved on reisolation in mice. J. Gen. Virol. 70: Kitamoto, T., R. Iizuka, and J. Tateishi An amber mutation of prion protein in Gerstmann-Straussler syndrome with mutant PrP plaques. Biochem. Biophys. Res. Commun. 192: Kocisko, D. A., J. H. Come, S. A. Priola, B. Chesebro, G. J. Raymond, P. T. Lansbury, and B. Caughey Cell-free formation of protease-resistant prion protein. Nature (London) 370: Kocisko, D. A., S. A. Priola, G. J. Raymond, B. Chesebro, P. T. Lansbury, Jr., and B. Caughey Species specificity in the cell-free conversion of prion protein to protease-resistant forms: a model for the scrapie species barrier. Proc. Natl. Acad. Sci. USA 92: Locht, C., B. Chesebro, R. Race, and J. M. Keith Molecular cloning and complete sequence of prion protein cdna from mouse brain infected with the scrapie agent. Proc. Natl. Acad. Sci. USA 83: McKinley, M. P., D. C. Bolton, and S. B. Prusiner A protease-resistant protein is a structural component of the scrapie prion. Cell 35: Oesch, B., D. Westaway, M. Walchli, M. P. McKinley, S. B. H. Kent, R. Aebersold, R. A. Barry, P. Tempst, D. B. Teplow, L. E. Hood, S. B. Prusiner, and C. Weissmann A cellular gene encodes scrapie PrP protein. Cell 40: Palmer, M. S., A. J. Dryden, J. T. Hughes, and J. Collinge Homozygous prion protein genotype predisposes to sporadic Creutzfeldt-Jakob disease. Nature (London) 352: Priola, S. A., B. Caughey, R. E. Race, and B. Chesebro Heterologous PrP molecules interfere with accumulation of protease-resistant PrP in scrapie-infected murine neuroblastoma cells. J. Virol. 68: Priola, S. A., B. Caughey, K. Wehrly, and B. Chesebro A 60-kDa prion protein (PrP) with properties of both the normal and scrapie-associated forms of PrP. J. Biol. Chem. 270: Prusiner, S. B Novel proteinaceous infectious particles cause scrapie. Science 216: Prusiner, S. B., M. Scott, D. Foster, K. M. Pan, D. Groth, C. Mirenda, M. Torchia, S. L. Yang, D. Serban, G. A. Carlson, P. C. Hoppe, D. Westaway, and S. J. DeArmond Transgenetic studies implicate interactions between homologous PrP isoforms in scrapie prion replication. Cell 63: Race, R. E., B. Caughey, K. Graham, D. Ernst, and B. Chesebro Analyses of frequency of infection, specific infectivity, and prion protein biosynthesis in scrapie-infected neuroblastoma cell clones. J. Virol. 62: Race, R. E., L. H. Fadness, and B. Chesebro Characterization of scrapie infection in mouse neuroblastoma cells. J. Gen. Virol. 68: Race, R. E., K. Graham, D. Ernst, B. Caughey, and B. Chesebro Analysis of linkage between scrapie incubation period and the prion protein gene in mice. J. Gen. Virol. 71: Rohwer, R. G The scrapie agent: a virus by any other name. Curr. Top. Microbiol. Immunol. 172: Scott, M., D. Foster, C. Mirenda, D. Serban, F. Coufal, M. Walchli, M. Torchia, D. Groth, G. Carlson, S. J. DeArmond, D. Westaway, and S. B. Prusiner Transgenic mice expressing hamster prion protein produce species-specific scrapie infectivity and amyloid plaques. Cell 59: Scott, M., D. Groth, D. Foster, M. Torchia, S. L. Yang, S. J. DeArmond, and S. B. Prusiner Propagation of prions with artificial properties in transgenic mice expressing chimeric PrP genes. Cell 73: Scott, M. R., R. Kohler, D. Foster, and S. B. Prusiner Chimeric prion protein expression in cultured cells and transgenic mice. Protein Sci. 1: Tagliavini, F., F. Prelli, M. Porro, G. Rossi, G. Giaccone, M. R. Farlow, S. R. Dlouhy, B. Ghetti, O. Bugiani, and B. Frangione Amyloid fibrils in Gerstmann-Straussler-Scheinker disease (Indiana and Swedish kindreds) express only PrP peptides encoded by the mutant allele. Cell 79:

Efficient Conversion of Normal Prion Protein (PrP) by Abnormal Hamster PrP Is Determined by Homology at Amino Acid Residue 155

Efficient Conversion of Normal Prion Protein (PrP) by Abnormal Hamster PrP Is Determined by Homology at Amino Acid Residue 155 JOURNAL OF VIROLOGY, May 2001, p. 4673 4680 Vol. 75, No. 10 0022-538X/01/$04.00 0 DOI: 10.1128/JVI.75.10.4673 4680.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved. Efficient

More information

Species-Independent Inhibition of Abnormal Prion Protein (PrP) Formation by a Peptide Containing a Conserved PrP Sequence

Species-Independent Inhibition of Abnormal Prion Protein (PrP) Formation by a Peptide Containing a Conserved PrP Sequence JOURNAL OF VIROLOGY, Aug. 1999, p. 6245 6250 Vol. 73, No. 8 0022-538X/99/$04.00 0 Species-Independent Inhibition of Abnormal Prion Protein (PrP) Formation by a Peptide Containing a Conserved PrP Sequence

More information

Interactions between heterologous forms of prion protein: Binding, inhibition of conversion, and species barriers

Interactions between heterologous forms of prion protein: Binding, inhibition of conversion, and species barriers Interactions between heterologous forms of prion protein: Binding, inhibition of conversion, and species barriers Motohiro Horiuchi*, Suzette A. Priola*, Joëlle Chabry*, and Byron Caughey* *Laboratory

More information

Multiple Amino Acid Residues within the Rabbit Prion Protein Inhibit Formation of Its Abnormal Isoform

Multiple Amino Acid Residues within the Rabbit Prion Protein Inhibit Formation of Its Abnormal Isoform JOURNAL OF VIROLOGY, Feb. 2003, p. 2003 2009 Vol. 77, No. 3 0022-538X/03/$08.00 0 DOI: 10.1128/JVI.77.3.2003 2009.2003 Copyright 2003, American Society for Microbiology. All Rights Reserved. Multiple Amino

More information

Flexible N-terminal region of prion protein influences conformation of protease-resistant prion

Flexible N-terminal region of prion protein influences conformation of protease-resistant prion JBC Papers in Press. Published on January 21, 2004 as Manuscript M303697200 M3:03697 PrP53 N-terminal truncation of PrP affects PrP-res conformation Flexible N-terminal region of prion protein influences

More information

Research Biochemicals. ANTIBODIES TO PRION PROTEINS

Research Biochemicals. ANTIBODIES TO PRION PROTEINS Research Biochemicals. ANTIBODIES TO PRION PROTEINS 2005_03 Research Biochemicals. TABLE OF CONTENTS MONOCLONAL AB 6H4 3 MONOCLONAL AB 34C9 4 RECOMBINANT BOVINE PRP 5 PRICE LIST 7 ORDER INFORMATION 8 2

More information

Prions Other molecules besides organelle DNA are inherited in non-mendelian patterns.

Prions Other molecules besides organelle DNA are inherited in non-mendelian patterns. Prions Other molecules besides organelle DNA are inherited in non-mendelian patterns. Examples of non-mendelian patterns of inheritance extend beyond the inheritance of organelle DNA. Certain DNA and RNA

More information

Detection of proteinase K-resistant prion protein and infectivity in mouse spleen by 2 weeks after scrapie agent inoculation

Detection of proteinase K-resistant prion protein and infectivity in mouse spleen by 2 weeks after scrapie agent inoculation Journal of General Virology (1992), 73, 3319 3323. Printed in Great Britain 3319 Detection of proteinase K-resistant prion protein and infectivity in mouse spleen by 2 weeks after scrapie agent inoculation

More information

Linkage of the Scrapie-associated Fibril Protein (PrP) Gene and Sine Using Congenic Mice and Restriction Fragment Length Polymorphism Analysis

Linkage of the Scrapie-associated Fibril Protein (PrP) Gene and Sine Using Congenic Mice and Restriction Fragment Length Polymorphism Analysis J. gen. Virol. (1987), 68, 2711-2716. Printed in Great Britain 2711 Key words: SAF/Sinc/RFLP Linkage of the Scrapie-associated Fibril Protein (PrP) Gene and Sine Using Congenic Mice and Restriction Fragment

More information

The Search for Scrapie Agent Nucleic Acid

The Search for Scrapie Agent Nucleic Acid MICROBIOLOGICAL REVIEWS, Sept. 1990, p. 242-246 Vol. 54, No. 3 0146-0749/90/030242-05$02.00/0 Copyright C 1990, American Society for Microbiology The Search for Scrapie Agent Nucleic Acid JUDD M. AIKEN*

More information

Prion protein NMR structure and species barrier for prion diseases

Prion protein NMR structure and species barrier for prion diseases Proc. Natl. Acad. Sci. USA Vol. 94, pp. 7281 7285, July 1997 Biophysics Prion protein NMR structure and species barrier for prion diseases MARTIN BILLETER, ROLAND RIEK, GERHARD WIDER, SIMONE HORNEMANN,

More information

Are Sinc and the PrP gene congruent? Evidence from PrP gene analysis in Sine congenic mice

Are Sinc and the PrP gene congruent? Evidence from PrP gene analysis in Sine congenic mice Journal of General Virology (1992), 73, 2751-2755. Printed in Great Britain 2751 Are Sinc and the PrP gene congruent? Evidence from PrP gene analysis in Sine congenic mice Nora Hunter, 1. Janine C. Dann,

More information

Transmissible mink encephalopathy species barrier effect between ferret and mink: PrP gene and protein analysis

Transmissible mink encephalopathy species barrier effect between ferret and mink: PrP gene and protein analysis Journal of General Virology (1994), 75, 2947 2953. Printed in Great Britain 2947 Transmissible mink encephalopathy species barrier effect between ferret and mink: PrP gene and protein analysis Jason C.

More information

The Expression of Recombinant Sheep Prion Protein (RecShPrPC) and its Detection Using Western Blot and Immuno-PCR

The Expression of Recombinant Sheep Prion Protein (RecShPrPC) and its Detection Using Western Blot and Immuno-PCR The Expression of Recombinant Sheep Prion Protein (RecShPrPC) and its Detection Using Western Blot and Immuno-PCR S. Thomas, C. S. Fernando, J. Roach, U. DeSilva and C. A. Mireles DeWitt The objective

More information

Prions show their metal

Prions show their metal Prions show their metal Ian Jones describes the evidence that increasingly links prion proteins and copper ions. Could a defect in the metabolism of this simple metal be at the heart of 'mad cow' disease?

More information

1997 Nobel Prize in Physiology or Medicine Dr. Stanley Prusiner

1997 Nobel Prize in Physiology or Medicine Dr. Stanley Prusiner 1997 Nobel Prize in Physiology or Medicine Dr. Stanley Prusiner for the discovery of prions* - a new biological principal of infection I. PRIONS - Definition Prions are simple proteins that are much smaller

More information

Jiali Li, Sukhvir P Mahal, Cheryl A Demczyk and Charles Weissmann

Jiali Li, Sukhvir P Mahal, Cheryl A Demczyk and Charles Weissmann Manuscript EMBOR-2011-35144 Mutability of prions Jiali Li, Sukhvir P Mahal, Cheryl A Demczyk and Charles Weissmann Corresponding author: Charles Weissmann, Scripps Florida Review timeline: Submission date:

More information

ANNEX III ADDITIONAL GUIDANCE ON SPECIFIC TYPES OF GM WORK

ANNEX III ADDITIONAL GUIDANCE ON SPECIFIC TYPES OF GM WORK ANNEX III ADDITIONAL GUIDANCE ON SPECIFIC TYPES OF GM WORK 1. Work involving the cloning of potentially harmful DNA or prion protein genes should be assessed with respect to the risks posed to human health

More information

The Genomic Identity of Different Strains of Mouse Scrapie Is Expressed in Hamsters and Preserved on Reisolation in Mice

The Genomic Identity of Different Strains of Mouse Scrapie Is Expressed in Hamsters and Preserved on Reisolation in Mice J. gen. Virol. (1989), 70, 2017-2025. Printed in Great Britain 2017 Key words: scrapie/interspecies transmission/genome The Genomic dentity of Different Strains of Mouse Scrapie s Expressed in Hamsters

More information

Received 22 March 2004/Accepted 24 August 2004

Received 22 March 2004/Accepted 24 August 2004 JOURNAL OF VIROLOGY, Jan. 2005, p. 934 943 Vol. 79, No. 2 0022-538X/05/$08.00 0 doi:10.1128/jvi.79.2.934 943.2005 Copyright 2005, American Society for Microbiology. All Rights Reserved. Biochemical Fingerprints

More information

Dominant-Negative Inhibition of Prion Formation Diminished by Deletion Mutagenesis of the Prion Protein

Dominant-Negative Inhibition of Prion Formation Diminished by Deletion Mutagenesis of the Prion Protein JOURNAL OF VIROLOGY, May 2000, p. 4351 4360 Vol. 74, No. 9 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Dominant-Negative Inhibition of Prion Formation

More information

Method for Folding of Recombinant Prion Protein to Soluble β-sheet Secondary Structure

Method for Folding of Recombinant Prion Protein to Soluble β-sheet Secondary Structure Chapter 2 Method for Folding of Recombinant Prion Protein to Soluble β-sheet Secondary Structure Laura J. Ellett Abstract A key event in the pathogenesis of prion diseases is the change in structure of

More information

Mutations and Disease

Mutations and Disease Mutations and Disease Objectives and lecture plan Describe what are mutations Explain how do we identify mutations Explain how and why mutant proteins lead to disease Describe what kinds of DNA mutations

More information

Applicazioni biotecnologiche

Applicazioni biotecnologiche Applicazioni biotecnologiche Analisi forense Sintesi di proteine ricombinanti Restriction Fragment Length Polymorphism (RFLP) Polymorphism (more fully genetic polymorphism) refers to the simultaneous occurrence

More information

7.012 Problem Set 5. Question 1

7.012 Problem Set 5. Question 1 Name Section 7.012 Problem Set 5 Question 1 While studying the problem of infertility, you attempt to isolate a hypothetical rabbit gene that accounts for the prolific reproduction of rabbits. After much

More information

Site directed mutagenesis, Insertional and Deletion Mutagenesis. Mitesh Shrestha

Site directed mutagenesis, Insertional and Deletion Mutagenesis. Mitesh Shrestha Site directed mutagenesis, Insertional and Deletion Mutagenesis Mitesh Shrestha Mutagenesis Mutagenesis (the creation or formation of a mutation) can be used as a powerful genetic tool. By inducing mutations

More information

Pr oject Summar y. Development of a diagnostic assay for chronic wasting disease. Principal Investigator: Richard Rubenstein

Pr oject Summar y. Development of a diagnostic assay for chronic wasting disease. Principal Investigator: Richard Rubenstein Pr oject Summar y Development of a diagnostic assay for chronic wasting disease Principal Investigator: Richard Rubenstein New York State Institute for Basic Research Study Completed May 2003 Funded by

More information

TRANSGENIC ANIMALS. -transient transfection of cells -stable transfection of cells. - Two methods to produce transgenic animals:

TRANSGENIC ANIMALS. -transient transfection of cells -stable transfection of cells. - Two methods to produce transgenic animals: TRANSGENIC ANIMALS -transient transfection of cells -stable transfection of cells - Two methods to produce transgenic animals: 1- DNA microinjection - random insertion 2- embryonic stem cell-mediated gene

More information

Strategies for media.ng the toxicity of prion proteins. Katrina A. Diaz Burke Group Literature Seminar 11/23/13

Strategies for media.ng the toxicity of prion proteins. Katrina A. Diaz Burke Group Literature Seminar 11/23/13 Strategies for media.ng the toxicity of prion proteins Katrina A. Diaz Burke Group Literature Seminar 11/23/13 PrP c vs. PrP sc hmp://en.wikipedia.org/wiki/prnp PrP (prion protein or protease- resistant

More information

Temporary and Permanent Modifications to a Single Strain of Mouse Scrapie on Transmission to Rats and Hamsters

Temporary and Permanent Modifications to a Single Strain of Mouse Scrapie on Transmission to Rats and Hamsters J. gen. Virol. (1987), 68, 1875-1881. Printed in Great Britain 1875 Key words: scrapie/pathogenesis/mutation Temporary and Permanent Modifications to a Single Strain of Mouse Scrapie on Transmission to

More information

Supplemental Information

Supplemental Information Supplemental Information ATP-dependent unwinding of U4/U6 snrnas by the Brr2 helicase requires the C-terminus of Prp8 Corina Maeder 1,3, Alan K. Kutach 1,2,3, and Christine Guthrie 1 1 Department of Biochemistry

More information

Prions and prion diseases. Bi156 lecture, 2/13/12

Prions and prion diseases. Bi156 lecture, 2/13/12 Prions and prion diseases Bi156 lecture, 2/13/12 Transmissible spongiform encephalopathies: history TSEs are uniformly fatal diseases in which the brain becomes full of holes, exhibiting a spongelike appearance

More information

Recombinant scrapie-like prion protein of 106 amino acids is soluble

Recombinant scrapie-like prion protein of 106 amino acids is soluble Proc. Natl. Acad. Sci. USA Vol. 93, pp. 15457 15462, December 1996 Neurobiology Recombinant scrapie-like prion protein of 106 amino acids is soluble (prion diseases protein solubility prion protein structure

More information

Motivation From Protein to Gene

Motivation From Protein to Gene MOLECULAR BIOLOGY 2003-4 Topic B Recombinant DNA -principles and tools Construct a library - what for, how Major techniques +principles Bioinformatics - in brief Chapter 7 (MCB) 1 Motivation From Protein

More information

Protease-resistant PrP deposition in brain and non-central nervous system tissues of a murine model of bovine spongiform encephalopathy

Protease-resistant PrP deposition in brain and non-central nervous system tissues of a murine model of bovine spongiform encephalopathy Journal of General Virology (I 996), 77, 194 I-I 946. Printed in Great Britain Protease-resistant PrP deposition in brain and non-central nervous system tissues of a murine model of bovine spongiform encephalopathy

More information

Technical tips Session 4

Technical tips Session 4 Technical tips Session 4 Biotinylation assay: Streptavidin is a small bacterial protein that binds with high affinity to the vitamin biotin. This streptavidin-biotin combination can be used to link molecules

More information

Identification of novel proteinase K-resistant C-terminal fragments of PrP in

Identification of novel proteinase K-resistant C-terminal fragments of PrP in JBC Papers in Press. Published on August 12, 2003 as Manuscript M308550200 Identification of novel proteinase K-resistant C-terminal fragments of PrP in Creutzfeldt-Jakob disease* Wen-Quan Zou, Sabina

More information

Nora Hunter,* Wilfred Goldmann, Grace Benson, James D. Foster and James Hope

Nora Hunter,* Wilfred Goldmann, Grace Benson, James D. Foster and James Hope Journal of General Virology (1993), 74, 1025-1031. Printed in Great Britain 1025 Swaledale sheep affected by natural scrapie differ significantly in PrP genotype frequencies from healthy sheep and those

More information

Zool 3200: Cell Biology Exam 3 3/6/15

Zool 3200: Cell Biology Exam 3 3/6/15 Name: Trask Zool 3200: Cell Biology Exam 3 3/6/15 Answer each of the following questions in the space provided; circle the correct answer or answers for each multiple choice question and circle either

More information

Analysis of gene function

Analysis of gene function Genome 371, 22 February 2010, Lecture 12 Analysis of gene function Gene knockouts PHASE TWO: INTERPRETATION I THINK I FOUND A CORNER PIECE. 3 BILLION PIECES Analysis of a disease gene Gene knockout or

More information

Enzyme that uses RNA as a template to synthesize a complementary DNA

Enzyme that uses RNA as a template to synthesize a complementary DNA Biology 105: Introduction to Genetics PRACTICE FINAL EXAM 2006 Part I: Definitions Homology: Comparison of two or more protein or DNA sequence to ascertain similarities in sequences. If two genes have

More information

BSCI410-Liu/Spring 06 Exam #1 Feb. 23, 06

BSCI410-Liu/Spring 06 Exam #1 Feb. 23, 06 Your Name: Your UID# 1. (20 points) Match following mutations with corresponding mutagens (X-RAY, Ds transposon excision, UV, EMS, Proflavin) a) Thymidine dimmers b) Breakage of DNA backbone c) Frameshift

More information

Bi Lecture 3 Loss-of-function (Ch. 4A) Monday, April 8, 13

Bi Lecture 3 Loss-of-function (Ch. 4A) Monday, April 8, 13 Bi190-2013 Lecture 3 Loss-of-function (Ch. 4A) Infer Gene activity from type of allele Loss-of-Function alleles are Gold Standard If organism deficient in gene A fails to accomplish process B, then gene

More information

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity Promega Notes Magazine Number 62, 1997, p. 02 The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity By Christine Andrews and Scott Lesley Promega

More information

ICH Considerations. Oncolytic Viruses September 17, 2009

ICH Considerations. Oncolytic Viruses September 17, 2009 INTERNATIONAL CONFERENCE ON HARMONISATION OF TECHNICAL REQUIREMENTS FOR REGISTRATION OF PHARMACEUTICALS FOR HUMAN USE ICH Considerations Oncolytic Viruses September 17, 2009 1. Introduction Oncolytic viruses

More information

Biochemical and Physical Properties of the Prion Protein from Two

Biochemical and Physical Properties of the Prion Protein from Two JOURNAL OF VIROLOGY, Apr. 1992, p. 2096-2101 0022-538X/92/042096-06$02.00/0 Copyright 1992, American Society for Microbiology Vol. 66, No. 4 Biochemical and Physical Properties of the Prion Protein from

More information

Test Bank for Molecular Cell Biology 7th Edition by Lodish

Test Bank for Molecular Cell Biology 7th Edition by Lodish Test Bank for Molecular Cell Biology 7th Edition by Lodish Link download full: http://testbankair.com/download/test-bank-formolecular-cell-biology-7th-edition-by-lodish/ Chapter 5 Molecular Genetic Techniques

More information

Transmission of Creutzfeldt-Jakob disease from humans to transgenic mice expressing chimeric human-mouse prion protein

Transmission of Creutzfeldt-Jakob disease from humans to transgenic mice expressing chimeric human-mouse prion protein Proc. Natl. Acad. Sci. USA Vol. 91, pp. 9936-9940, October 1994 Medical Sciences Transmission of Creutzfeldt-Jakob disease from humans to transgenic mice expressing chimeric human-mouse prion protein (species

More information

Prions A Challenge and Informative Paradigm for the Cleaning and Disinfection of Medical Devices

Prions A Challenge and Informative Paradigm for the Cleaning and Disinfection of Medical Devices Prions A Challenge and Informative Paradigm for the Cleaning and Disinfection of Medical Devices Annual WFHSS and JSMI Conference 2012 21-24 November 2012 Osaka, Japan Michael Beekes 1 Prion Diseases:

More information

BIOLOGY - CLUTCH CH.20 - BIOTECHNOLOGY.

BIOLOGY - CLUTCH CH.20 - BIOTECHNOLOGY. !! www.clutchprep.com CONCEPT: DNA CLONING DNA cloning is a technique that inserts a foreign gene into a living host to replicate the gene and produce gene products. Transformation the process by which

More information

Evaluation of New Cell Culture Inhibitors of Protease-Resistant Prion Protein against Scrapie Infection in Mice

Evaluation of New Cell Culture Inhibitors of Protease-Resistant Prion Protein against Scrapie Infection in Mice Utah State University DigitalCommons@USU Animal, Dairy, and Veterinary Science Faculty Publications Animal, Dairy & Veterinary Sciences 2004 Evaluation of New Cell Culture Inhibitors of Protease-Resistant

More information

The protein only hypothesis proposes that the causative

The protein only hypothesis proposes that the causative Scrapie prion protein accumulation by scrapieinfected neuroblastoma cells abrogated by exposure to a prion protein antibody Masato Enari, Eckhard Flechsig, and Charles Weissmann* Medical Research Council

More information

Chapter 1 Prion. 1.1 General overview of prion and prion diseases

Chapter 1 Prion. 1.1 General overview of prion and prion diseases Chapter 1 Prion 1.1 General overview of prion and prion diseases Scrapie is a prion agent. Prions are 'self-replicating' basic proteins of small molecular weight. Prions form a new class of infectious

More information

DNA: STRUCTURE AND REPLICATION

DNA: STRUCTURE AND REPLICATION DNA: STRUCTURE AND REPLICATION DNA was known to be a chemical in cells by the end of the nineteenth century, has the capacity to store genetic information, and can be copied and passed from generation

More information

Supplementary data. sienigma. F-Enigma F-EnigmaSM. a-p53

Supplementary data. sienigma. F-Enigma F-EnigmaSM. a-p53 Supplementary data Supplemental Figure 1 A sienigma #2 sienigma sicontrol a-enigma - + ++ - - - - - - + ++ - - - - - - ++ B sienigma F-Enigma F-EnigmaSM a-flag HLK3 cells - - - + ++ + ++ - + - + + - -

More information

Successful Transmission of Three Mouse-Adapted Scrapie Strains to Murine Neuroblastoma Cell Lines Overexpressing Wild-Type Mouse Prion Protein

Successful Transmission of Three Mouse-Adapted Scrapie Strains to Murine Neuroblastoma Cell Lines Overexpressing Wild-Type Mouse Prion Protein JOURNAL OF VIROLOGY, Jan. 2000, p. 320 325 Vol. 74, No. 1 0022-538X/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Successful Transmission of Three Mouse-Adapted Scrapie

More information

Chapter 20 Recombinant DNA Technology. Copyright 2009 Pearson Education, Inc.

Chapter 20 Recombinant DNA Technology. Copyright 2009 Pearson Education, Inc. Chapter 20 Recombinant DNA Technology Copyright 2009 Pearson Education, Inc. 20.1 Recombinant DNA Technology Began with Two Key Tools: Restriction Enzymes and DNA Cloning Vectors Recombinant DNA refers

More information

Problem Set 8. Answer Key

Problem Set 8. Answer Key MCB 102 University of California, Berkeley August 11, 2009 Isabelle Philipp Online Document Problem Set 8 Answer Key 1. The Genetic Code (a) Are all amino acids encoded by the same number of codons? no

More information

Molecular Cell Biology - Problem Drill 11: Recombinant DNA

Molecular Cell Biology - Problem Drill 11: Recombinant DNA Molecular Cell Biology - Problem Drill 11: Recombinant DNA Question No. 1 of 10 1. Which of the following statements about the sources of DNA used for molecular cloning is correct? Question #1 (A) cdna

More information

INVESTIGATION OF THE BINDING SPECIFICITY OF IGF-IR USING MONOCLONAL ANTIBODIES

INVESTIGATION OF THE BINDING SPECIFICITY OF IGF-IR USING MONOCLONAL ANTIBODIES INVESTIGATION OF THE BINDING SPECIFICITY OF IGF-IR USING MONOCLONAL ANTIBODIES By Mehrnaz Keyhanfar, Pharm.D. A thesis submitted to the University of Adelaide, South Australia in fulfilment of the requirements

More information

Pr oject Summar y. PrP genetics and expression in white-tailed deer. Principal Investigator: Judd Aiken. University of Wisconsin

Pr oject Summar y. PrP genetics and expression in white-tailed deer. Principal Investigator: Judd Aiken. University of Wisconsin Pr oject Summar y PrP genetics and expression in white-tailed deer Principal Investigator: Judd Aiken University of Wisconsin Study Completed May 2003 Funded by The Beef Checkoff 1 PrP genetics and expression

More information

RNA oligonucleotides and 2 -O-methylated oligonucleotides were synthesized by. 5 AGACACAAACACCAUUGUCACACUCCACAGC; Rand-2 OMe,

RNA oligonucleotides and 2 -O-methylated oligonucleotides were synthesized by. 5 AGACACAAACACCAUUGUCACACUCCACAGC; Rand-2 OMe, Materials and methods Oligonucleotides and DNA constructs RNA oligonucleotides and 2 -O-methylated oligonucleotides were synthesized by Dharmacon Inc. (Lafayette, CO). The sequences were: 122-2 OMe, 5

More information

against Human Prion Proteins in PrP ' Mice

against Human Prion Proteins in PrP ' Mice Generation of Monoclonal Antibodies against Human Prion Proteins in PrP ' Mice Susanne Krasemann,* Martin H. Groschup,t Silke Harmeyer,t Gerhard Hunsmann,* and Walter Bodemer* *Department of Virology and

More information

Schematic representation of the endogenous PALB2 locus and gene-disruption constructs

Schematic representation of the endogenous PALB2 locus and gene-disruption constructs Supplementary Figures Supplementary Figure 1. Generation of PALB2 -/- and BRCA2 -/- /PALB2 -/- DT40 cells. (A) Schematic representation of the endogenous PALB2 locus and gene-disruption constructs carrying

More information

Bi 8 Lecture 5. Ellen Rothenberg 19 January 2016

Bi 8 Lecture 5. Ellen Rothenberg 19 January 2016 Bi 8 Lecture 5 MORE ON HOW WE KNOW WHAT WE KNOW and intro to the protein code Ellen Rothenberg 19 January 2016 SIZE AND PURIFICATION BY SYNTHESIS: BASIS OF EARLY SEQUENCING complex mixture of aborted DNA

More information

Prions cause neurodegenerative diseases, including Creutzfeldt- Prions in skeletal muscle

Prions cause neurodegenerative diseases, including Creutzfeldt- Prions in skeletal muscle Prions in skeletal muscle Patrick J. Bosque*, Chongsuk Ryou*, Glenn Telling*, David Peretz*, Giuseppe Legname*, Stephen J. DeArmond*, and Stanley B. Prusiner* ** *Institute for Neurodegenerative Diseases

More information

2014 Pearson Education, Inc. CH 8: Recombinant DNA Technology

2014 Pearson Education, Inc. CH 8: Recombinant DNA Technology CH 8: Recombinant DNA Technology Biotechnology the use of microorganisms to make practical products Recombinant DNA = DNA from 2 different sources What is Recombinant DNA Technology? modifying genomes

More information

Genetic Engineering & Recombinant DNA

Genetic Engineering & Recombinant DNA Genetic Engineering & Recombinant DNA Chapter 10 Copyright The McGraw-Hill Companies, Inc) Permission required for reproduction or display. Applications of Genetic Engineering Basic science vs. Applied

More information

Supplemental Materials and Methods. Yeast strains. Strain genotypes are listed in Table S1. To generate MATainc::LEU2,

Supplemental Materials and Methods. Yeast strains. Strain genotypes are listed in Table S1. To generate MATainc::LEU2, Supplemental Materials and Methods Yeast strains. Strain genotypes are listed in Table S1. To generate MATainc::LEU2, the LEU2 marker was inserted by PCR-mediated recombination (BRACHMANN et al. 1998)

More information

GENETICS - CLUTCH CH.15 GENOMES AND GENOMICS.

GENETICS - CLUTCH CH.15 GENOMES AND GENOMICS. !! www.clutchprep.com CONCEPT: OVERVIEW OF GENOMICS Genomics is the study of genomes in their entirety Bioinformatics is the analysis of the information content of genomes - Genes, regulatory sequences,

More information

Discovery and Humanization of Novel High Affinity Neutralizing Monoclonal Antibodies to Human IL-17A

Discovery and Humanization of Novel High Affinity Neutralizing Monoclonal Antibodies to Human IL-17A Discovery and Humanization of Novel High Affinity Neutralizing Monoclonal Antibodies to Human IL-17A Contacts: Marty Simonetti martysimonetti@gmail.com Kirby Alton kirby.alton@abeomecorp.com Rick Shimkets

More information

GENETICS EXAM 3 FALL a) is a technique that allows you to separate nucleic acids (DNA or RNA) by size.

GENETICS EXAM 3 FALL a) is a technique that allows you to separate nucleic acids (DNA or RNA) by size. Student Name: All questions are worth 5 pts. each. GENETICS EXAM 3 FALL 2004 1. a) is a technique that allows you to separate nucleic acids (DNA or RNA) by size. b) Name one of the materials (of the two

More information

Chapter One. Construction of a Fluorescent α5 Subunit. Elucidation of the unique contribution of the α5 subunit is complicated by several factors

Chapter One. Construction of a Fluorescent α5 Subunit. Elucidation of the unique contribution of the α5 subunit is complicated by several factors 4 Chapter One Construction of a Fluorescent α5 Subunit The significance of the α5 containing nachr receptor (α5* receptor) has been a challenging question for researchers since its characterization by

More information

Bi 8 Lecture 4. Ellen Rothenberg 14 January Reading: from Alberts Ch. 8

Bi 8 Lecture 4. Ellen Rothenberg 14 January Reading: from Alberts Ch. 8 Bi 8 Lecture 4 DNA approaches: How we know what we know Ellen Rothenberg 14 January 2016 Reading: from Alberts Ch. 8 Central concept: DNA or RNA polymer length as an identifying feature RNA has intrinsically

More information

Map-Based Cloning of Qualitative Plant Genes

Map-Based Cloning of Qualitative Plant Genes Map-Based Cloning of Qualitative Plant Genes Map-based cloning using the genetic relationship between a gene and a marker as the basis for beginning a search for a gene Chromosome walking moving toward

More information

CH 8: Recombinant DNA Technology

CH 8: Recombinant DNA Technology CH 8: Recombinant DNA Technology Biotechnology the use of microorganisms to make practical products Recombinant DNA = DNA from 2 different sources What is Recombinant DNA Technology? modifying genomes

More information

The Biotechnology Toolbox

The Biotechnology Toolbox Chapter 15 The Biotechnology Toolbox Cutting and Pasting DNA Cutting DNA Restriction endonuclease or restriction enzymes Cellular protection mechanism for infected foreign DNA Recognition and cutting specific

More information

SCREENING AND PRESERVATION OF DNA LIBRARIES

SCREENING AND PRESERVATION OF DNA LIBRARIES MODULE 4 LECTURE 5 SCREENING AND PRESERVATION OF DNA LIBRARIES 4-5.1. Introduction Library screening is the process of identification of the clones carrying the gene of interest. Screening relies on a

More information

Lecture Four. Molecular Approaches I: Nucleic Acids

Lecture Four. Molecular Approaches I: Nucleic Acids Lecture Four. Molecular Approaches I: Nucleic Acids I. Recombinant DNA and Gene Cloning Recombinant DNA is DNA that has been created artificially. DNA from two or more sources is incorporated into a single

More information

Title. CitationBiochemical and Biophysical Research Communications, Issue Date Doc URL. Type. File Information

Title. CitationBiochemical and Biophysical Research Communications, Issue Date Doc URL. Type. File Information Title Instability of familial spongiform encephalopathy-re Author(s)Watanabe, Yasuko; Hiraoka, Wakako; Shimoyama, Yuhei; CitationBiochemical and Biophysical Research Communications, Issue Date 2008-02-01

More information

Basics of Recombinant DNA Technology Biochemistry 302. March 5, 2004 Bob Kelm

Basics of Recombinant DNA Technology Biochemistry 302. March 5, 2004 Bob Kelm Basics of Recombinant DNA Technology Biochemistry 302 March 5, 2004 Bob Kelm Applications of recombinant DNA technology Mapping and identifying genes (DNA cloning) Propagating genes (DNA subcloning) Modifying

More information

CHAPTER 4 Cloning, expression, purification and preparation of site-directed mutants of NDUFS3 and NDUFS7

CHAPTER 4 Cloning, expression, purification and preparation of site-directed mutants of NDUFS3 and NDUFS7 CHAPTER 4 Cloning, expression, purification and preparation of site-directed mutants of NDUFS3 and NDUFS7 subunits of human mitochondrial Complex-I Q module N DUFS2, 3, 7 and 8 form the core subunits of

More information

Blotting Techniques (Southern blot, Northern blot, Western blot, and Eastern blot)

Blotting Techniques (Southern blot, Northern blot, Western blot, and Eastern blot) Blotting Techniques (Southern blot, Northern blot, Western blot, and Eastern blot) Masheal Aljumaah SEP 2018 Learning Objectives: What is blotting? Blotting Techniques Types. Applications for each technique.

More information

Self-test Quiz for Chapter 12 (From DNA to Protein: Genotype to Phenotype)

Self-test Quiz for Chapter 12 (From DNA to Protein: Genotype to Phenotype) Self-test Quiz for Chapter 12 (From DNA to Protein: Genotype to Phenotype) Question#1: One-Gene, One-Polypeptide The figure below shows the results of feeding trials with one auxotroph strain of Neurospora

More information

Supplementary Figure 1 Collision-induced dissociation (CID) mass spectra of peptides from PPK1, PPK2, PPK3 and PPK4 respectively.

Supplementary Figure 1 Collision-induced dissociation (CID) mass spectra of peptides from PPK1, PPK2, PPK3 and PPK4 respectively. Supplementary Figure 1 lision-induced dissociation (CID) mass spectra of peptides from PPK1, PPK, PPK3 and PPK respectively. % of nuclei with signal / field a 5 c ppif3:gus pppk1:gus 0 35 30 5 0 15 10

More information

ICH Considerations Oncolytic Viruses ONCOLYTIC VIRUSES (EMEA/CHMP/ICH/607698/2008) TRANSMISSION TO CHMP November 2008

ICH Considerations Oncolytic Viruses ONCOLYTIC VIRUSES (EMEA/CHMP/ICH/607698/2008) TRANSMISSION TO CHMP November 2008 European Medicines Agency October 2009 EMEA/CHMP/ICH/607698/2008 ICH Considerations Oncolytic Viruses ONCOLYTIC VIRUSES (EMEA/CHMP/ICH/607698/2008) TRANSMISSION TO CHMP November 2008 TRANSMISSION TO INTERESTED

More information

3. Translation. 2. Transcription. 1. Replication. and functioning through their expression in. Genes are units perpetuating themselves

3. Translation. 2. Transcription. 1. Replication. and functioning through their expression in. Genes are units perpetuating themselves Central Dogma Genes are units perpetuating themselves and functioning through their expression in the form of proteins 1 DNA RNA Protein 2 3 1. Replication 2. Transcription 3. Translation Spring 2002 21

More information

Chapter 6 - Molecular Genetic Techniques

Chapter 6 - Molecular Genetic Techniques Chapter 6 - Molecular Genetic Techniques Two objects of molecular & genetic technologies For analysis For generation Molecular genetic technologies! For analysis DNA gel electrophoresis Southern blotting

More information

Basic concepts of molecular biology

Basic concepts of molecular biology Basic concepts of molecular biology Gabriella Trucco Email: gabriella.trucco@unimi.it What is life made of? 1665: Robert Hooke discovered that organisms are composed of individual compartments called cells

More information

Supplementary Figure S1. Immunodetection of full-length XA21 and the XA21 C-terminal cleavage product.

Supplementary Figure S1. Immunodetection of full-length XA21 and the XA21 C-terminal cleavage product. Supplementary Information Supplementary Figure S1. Immunodetection of full-length XA21 and the XA21 C-terminal cleavage product. Total protein extracted from Kitaake wild type and rice plants carrying

More information

ICH CONSIDERATIONS Oncolytic Viruses

ICH CONSIDERATIONS Oncolytic Viruses European Medicines Agency Pre-authorisation Evaluation of Medicines for Human Use 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 ICH CONSIDERATIONS Oncolytic Viruses 20 November 2008 EMEA/CHMP/GTWP/607698/2008

More information

TRANSGENIC ANIMALS. transient. stable. - Two methods to produce transgenic animals:

TRANSGENIC ANIMALS. transient. stable. - Two methods to produce transgenic animals: Only for teaching purposes - not for reproduction or sale CELL TRANSFECTION transient stable TRANSGENIC ANIMALS - Two methods to produce transgenic animals: 1- DNA microinjection 2- embryonic stem cell-mediated

More information

Supplementary Figure 1. α-synuclein is truncated in PD and LBD brains. Nature Structural & Molecular Biology: doi: /nsmb.

Supplementary Figure 1. α-synuclein is truncated in PD and LBD brains. Nature Structural & Molecular Biology: doi: /nsmb. Supplementary Figure 1 α-synuclein is truncated in PD and LBD brains. (a) Specificity of anti-n103 antibody. Anti-N103 antibody was coated on an ELISA plate and different concentrations of full-length

More information

OmicsLink shrna Clones guaranteed knockdown even in difficult-to-transfect cells

OmicsLink shrna Clones guaranteed knockdown even in difficult-to-transfect cells OmicsLink shrna Clones guaranteed knockdown even in difficult-to-transfect cells OmicsLink shrna clone collections consist of lentiviral, and other mammalian expression vector based small hairpin RNA (shrna)

More information

MCB 102 University of California, Berkeley August 11 13, Problem Set 8

MCB 102 University of California, Berkeley August 11 13, Problem Set 8 MCB 102 University of California, Berkeley August 11 13, 2009 Isabelle Philipp Handout Problem Set 8 The answer key will be posted by Tuesday August 11. Try to solve the problem sets always first without

More information

Plaque Size Phenotype as a Selectable Marker To Generate Vaccinia Virus Recombinants

Plaque Size Phenotype as a Selectable Marker To Generate Vaccinia Virus Recombinants JOURNAL OF VIROLOGY, Feb. 1989, p. 997-1001 0022-538X/89/020997-05$02.00/0 opyright 0 1989, American Society for Microbiology Vol. 63, No. 2 Plaque Size Phenotype as a Selectable Marker To Generate Vaccinia

More information

Biotechnology Unit: Viruses

Biotechnology Unit: Viruses Biotechnology Unit: Viruses What do you see here? What is the cause: bacteria or virus? In the late 1800 s Martinus Beijerinck performed this experiment and saw that something smaller than bacteria was

More information

Species predicted to react based on 100% sequence homology: Chicken, Bovine, Dog.

Species predicted to react based on 100% sequence homology: Chicken, Bovine, Dog. 1 of 5 11/1/2013 10:25 PM Product Pathways - Jak/Stat Pathway Phospho-Stat3 (Tyr705) Antibody #9131 Have you tried your application using our XP monoclonal antibodies? Try products: 9145 PhosphoSitePlus

More information

Quality Control Assays

Quality Control Assays QUALITY CONTROL An integral part of the Penn Vector Core is its robust quality control program which is carried out by a separate quality control group. Quality control assays have been developed and optimized

More information

Basic concepts of molecular biology

Basic concepts of molecular biology Basic concepts of molecular biology Gabriella Trucco Email: gabriella.trucco@unimi.it Life The main actors in the chemistry of life are molecules called proteins nucleic acids Proteins: many different

More information