Yield10 Bioscience, Inc. (NASDAQCM:YTEN) Investor Presentation

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Yield10 Bioscience, Inc. (NASDAQCM:YTEN) Investor Presentation Yield10 is developing new technologies to achieve step-changes in crop yield to enhance global food security May 2017

Safe Harbor Statement* The statements made by Yield10 Bioscience, Inc. (the Company, we, our or us ) herein regarding the Company and its business may be forward-looking in nature and are made pursuant to the safe harbor provisions of the Private Securities Litigation Reform Act of 1995. Forward-looking statements describe the Company s future plans, projections, strategies and expectations, including statements regarding future results of operations and financial position, business strategy, prospective products and technologies, timing for receiving and reporting results of field tests and likelihood of success, and objectives of the Company for the future, and are based on certain assumptions and involve a number of risks and uncertainties, many of which are beyond the control of the Company, including, but not limited to, the risks detailed in the Company s Annual Report on Form 10-K for the year ended December 31, 2016 and other reports filed by the Company with the Securities and Exchange Commission (the SEC ). Forward-looking statements include all statements which are not historical facts, and can generally be identified by terms such as anticipates, believes, could, estimates, intends, may, plans, projects, should, will, would, or the negative of those terms and similar expressions. Because forward-looking statements are inherently subject to risks and uncertainties, some of which cannot be predicted or quantified and may be beyond the Company s control, you should not rely on these statements as predictions of future events. Actual results could differ materially from those projected due to our history of losses, lack of market acceptance of our products and technologies, the complexity of technology development and relevant regulatory processes, market competition, changes in the local and national economies, and various other factors. All forward-looking statements contained herein speak only as of the date hereof, and the Company undertakes no obligation to update any forward-looking statements, whether to reflect new information, events or circumstances after the date hereof or otherwise, except as may be required by law. *Under the Private Securities Litigation Reform Act of 1995 2

Company Overview and Objective Yield10 Bioscience is developing technologies to enhance global food security Headquartered in Woburn, MA USA Oilseeds center of excellence in Saskatoon, Canada Yield10 is bringing extensive expertise and track record in optimizing the flow of carbon in living systems to the agriculture sector to increase yield in key row crops Yield10 is targeting step-change, or 10-20% increases, in seed yield Our technology is based on 15 plus years of cutting edge crop metabolic engineering research 10 recent patent applications for increased crop yield Initial development targets include canola, soybean and corn Additional market opportunities include licensing or partnering in other crops Yield10 will focus on its core strengths of advanced bioscience and innovation Discover and develop proprietary crop yield technologies and de-risk them by developing proof points in canola, soybean and corn to optimize value capture from licensing or acquisition 3

Yield10: A Compelling Market Opportunity Crop yield is the key value driver in the Ag sector and the key to addressing food security Y10 is aligned with compelling megatrends Global population growth from 7 billion to over 9.6 billion by 2050 Need 70% increase in food production by 2050 Traditional crop breeding cannot solve this problem 1 Ag Sector consolidation Top 5 Ag players becoming the top three Need to fill product development pipelines Need Innovation and new technology approaches Advances in metabolic engineering (synthetic biology) Advanced genome editing technologies e.g.crispr/cas9 9 October 2009 Revised June, 2015 GA/EF/3242 Food Production Must Double by 2050 to Meet Demand from World s Growing Population 4 Regulatory traits developed using specific genetic engineering approaches may be unregulated 2 Gene deletions using genome editing e.g. CRISPR/Cas9 to delete native gene function Introduction of genes from closely related or same species with no foreign DNA 1 D.K. Ray, et. al PLOS, 2013 2 https://www.aphis.usda.gov/aphis/ourfocus/biotechnology/sa_brs_vpm/340-peis

Technology Platforms Yield10 applies its technology platforms to enable step-change increases in crop yield Fast Field Testing in Camelina Validate performance in field Identify any negative effects Identify downstream bottlenecks Optimize gene expression and additional gene modifications to maximize yield outcomes Value Creation Deploy traits in target crops Develop multi-year, multi-site field data Corn Soybean Canola Trait Gene Discovery 2012-2016 Translation Ongoing 2016 Value Demonstration Started 2017 5

Trait Genes in Development Yield10 has a rich pipeline of crop traits and many opportunities exist for licensing and/or partnerships Smart Grid T3 Platform Trait C3003 (1 st & 2 nd Gen) Value Driver Genetic Engineering Genome Editing Seed yield Water use + - Current Activity Next Steps Camelina field testing Canola, soybean and rice in development C3004 Seed yield + + Camelina editing underway C3007 Oil content + + Camelina, canola editing underway Licensing/Partnering Opportunities alfalfa, cotton, potato, rice, wheat, sugar beet and potentially corn cotton, potato, rice, wheat, sugar beet and potentially corn Camelina, canola, soybean C4001 Yield + +/- Corn transformation Forage, all major crops C4002 Yield + +/- Corn transformation Forage, all major crops C4003 Yield + +/- Rice transformation Corn transformation All major crops C4004 Yield + + Corn transformation All major crops C4005 Drought + +/- Corn transformation All major crops 6 C4006 Drought + +/- Corn transformation All major crops 22 additional targets for genome editing have been identified and will undergo validation

Yield10: Trait Gene Selection Criteria Yield10 has a rich pipeline of yield gene trait leads but must be selective in those we choose to pursue on our own Does the gene trait bring new science to a known yield limitation problem? Do we understand the biological mechanism? Is it differentiated and do we believe we have a solid IP position? Acreage potential and hence revenue potential Effective in all varieties for a major crop (in e.g. all soybean varieties) Can it be used to enhance yield in a number of different crops? Could it become a franchise trait similar to Roundup Ready or YieldGard? Do we have access to capabilities with a clear path to develop field trial data? Assessment of economic potential based on results achieved in our studies Is the gene trait amenable to genome editing, i.e. lower cost and regulatory barriers to entry? Deploy in crops currently not GMO 7 Can this be leveraged for near term licensing/partnerships for revenue to support longer term goals

Novel Yield Trait Gene: C3003 Advancing Development of C3003 in Key Oilseed Crops and Rice Background on C3003 The algal gene C3003 enables more efficient carbon capture through photosynthesis and step-change increase in seed yield First generation C3003 produced up to a 23% increase in average seed yield in the best performing Camelina lines (2016 field test) Second generation C3003 produced up to a 24% increase in seed yield while maintaining seed weight (2016 greenhouse study) Spring 2017 Field Tests of C3003 Starting Q2 Testing 2 nd generation C3003 in Camelina Testing 1 st generation C3003 in canola Study results due in Q4 2017 Translating the C3003 Trait to Additional C3 Crops Work underway to insert C3003 trait into soybean and rice CFIA approves camelina oil for use in Atlantic salmon feed by Aquafeed.com on 05/04/2017 The Canadian Food Inspection Agency (CFIA) has approved the use of mechanically-extracted camelina oil as a feed ingredient for farmed salmon and trout. Camelina sativa, or false flax, is a hardy oilseed plant that is rich in omega-3 fatty acids, protein and antioxidants. This super-nutritious plant is used as a vegetable oil for human consumption and as an ingredient or supplement in some animal feeds. Fish feed manufacturers have also explored the use of crop-based oilseeds like camelina as viable and cost-efficient substitutes for wildsourced fish oils and proteins currently used in fish feeds. 8

C3003 Trait Development Timeline Indicative Proof Point Timelines for C3003 Year Crop/Trait 2017 2018 2019 2020 Translation Camelina/Gen 1 C3003 Camelina/Gen 2 C3003 Field test data (Q1) Greenhouse data (Q1) Field test data (Q4)* Field trial Camelina/Gen 3 C3003 TBD* Canola/Gen 1 C3003 Field test data (Q4)* Field trial data (Q4) Field trial Canola/Gen 2 C3003 Greenhouse data (Q4-Q1) Field test data (Q4)* Field trial Value Demonstration 9 Canola/Gen 3 C3003 Soybean/Gen 1 C3003 Soybean/Gen 2 C3003 Greenhouse data (Q4 2017/Q1 2018) Greenhouse data (Q4 2017/Q1 2018) TBD 1 Field test Field trial TBD 1 Field test Field Trial Rice/Gen 1 C3003 Greenhouse data TBD 1 * Progress depends on results achieved in greenhouse studies 1 Progress depends on seed bulk up in greenhouse

The Potential for Genome Editing in Agriculture Potential to Develop Advanced Crop Traits using Genetic Engineering having Unregulated Status Achieving deregulated status for traditional biotech traits is time consuming and expensive Genome editing techniques such as CRISPR/Cas9 allow us to reduce the activity or inactivate gene targets in a plant without adding new DNA sequences USDA-APHIS has indicated that genome edited plants may be unregulated Achieve unregulated status for field research and field tests Achieve unregulated status for commercial launch based on data from field tests Examples of genome editing targets include key limiting steps in a pathway to produce a product such as oil or negative regulators (transcription factors) of plant growth and stress tolerance Genome editing reduces product development timelines and regulatory costs Potential to expand traits developed using genetic engineering tools into a wider range of crop species Next Phase of High-Tech Crops, Editing Their Genes May 7, 2017 By Jacob Bunge 10

Genome Editing Targets for Oilseed Crops C3004 and C3007 Provide Genome Editing Targets in Key Oilseed Crops Background on C3004 and C3007 C3004 is involved in controlling the flow of fixed carbon from leaves to seed providing an editing target that may increase seed yield and/or seed size C3007 is a negative controller in a key limiting step in seed oil production (option from Univ. of Missouri to license) C3004 and C3007 could be used separately or eventually stacked with C3003 line to produce high yield, high oil content Camelina, canola and soybean lines Potential Unregulated Traits Genome deletions of C3004 and/or C3007 in Camelina, canola and soybean with no foreign DNA Potential to stack with existing off-patent deregulated traits eg. Round-up Ready Recent Progress Work underway to edit C3004 in Camelina Work underway to edit C3007 in Camelina and canola Preparing letter for USDA-APHIS for edited C3008 Camelina lines already developed in DOE project 11

Increasing Oil Content through Genome Editing Editing of C3007 trait Acetyl-CoA carboxylase (ACCase) - a key enzyme in oil biosynthesis with a complex enzyme structure C3007 is a key negative regulator of ACCase Yield10 is using genome editing to reduce/eliminate availability of C3007 (red squares) to increase the activity of the key ACCase enzyme for increased seed oil biosynthesis ACCase Photosynthesis Acetyl-CoA Oil precursor molecule Oil biosynthesis ACCase enzyme + BCCP ACCase activity + C3007 ACCase activity Genome editing to reduce/eliminate C3007 ACCase with increased activity Increased seed oil 12

Value Creation Yield10 s technology platforms enable value creation through step-change increases in crop yield Crop 2016 Harvest Tonnes/ Bushels 2016 Value in Billions Total Annual Value Potential Target Yield Increase Annual Value in Billions Value Creation Soybean Corn Canola 1 (Can) 18.4 M tns $9.6 20% $1.92 B Soybean 2 (US) 4.36 B bu $40.11 20% $8.01 B Canola Corn 2 (US) 15.2 B bu $50.16 10% $5.16 B Camelina Generation of multi-site, multiyear field trial data in target crops USDA projected on-farm corn price 2016-2017 is $3.30/bu USDA projected soybean price for 2016-2017 is $9.20/bu AAFC projected canola price 2016-2017 is $520/tonne 1. http://www.statcan.gc.ca/daily-quotidien/161206/dq161206b-eng.htm 2. https://www.nass.usda.gov/newsroom/2017/01_12_2017.php; High Plains/Midwest AG Journal, Jan. 19, 2017 Translation Ongoing 2016 Value Demonstration Starting 2017 13

Upcoming Milestones Yield10 is working to progress our yield enhancement technologies and build collaborations Report on progress on C3003 with additional constructs and crops 14 Q4 Report field test data from 2nd generation C3003 trait in Camelina Q4 Report field test data from 1 st generation C3003 trait in canola Q4, 2017 - Q1, 2018 Report greenhouse data from 1 st and 2 nd generation C3003 traits in soybean Report greenhouse data from 1 st generation C3003 trait in rice in 2018 Continue to deploy additional technology innovations in Camelina, canola, soybean and corn lines Progress C4000 series traits from the T3 discovery platform into corn and rice Report greenhouse data for C4003 in rice in 2018 Progress the CRISPR/Cas9 genome editing program focused on Yield10 s proprietary targets Secure Ag industry collaborations and additional grants Continue to leverage academic collaborations to access breakthrough crop science Continue to build intellectual property portfolio Publish technical papers on key technologies

Investment Considerations Breakthrough technology for improved crop yield Novel yield trait technologies for both C3 and C4 photosynthetic crops Foundation IP in place (owned/in-licensed) Positive results achieved for the C3003 yield trait gene Additional genome editing targets identified for future studies Organization is structured to achieve upcoming milestones Experienced management team with strong track record Staff and research facilities in place Aligned with compelling megatrends Global population growth from 7 billion to over 9.6 billion by 2050 driving need for >70% increase in food production over the same period Growing pressure on water and land resources, issues with intensive agriculture Large addressable market opportunity Crop R&D $4 billion Total Seed $53 billion Global food $4 trillion Numerous opportunities for value capture 15 Licensing and/or funded development projects with strategic partners Sale or acquisition of assets

Yield10 Bioscience, Inc. (NASDAQCM:YTEN) Investor Presentation Yield10 is developing new technologies to achieve step-changes in crop yield to enhance global food security May 2017