Workshop Overview. J Fass UCD Genome Center Bioinformatics Core Monday September 15, 2014
|
|
- Aleesha Cameron
- 6 years ago
- Views:
Transcription
1 Workshop Overview J Fass UCD Genome Center Bioinformatics Core Monday September 15, 2014
2 Schedule Overview M - Th common high throughput sequencing applications F Challenges! and other sequencing experiment considerations Q&A each morning what didn t work? stop your instances overnight to save $$ terminate (instances) & delete (volumes) after the course to save $$$$
3 General Comments Bioinformatics is experimental! NextGen tools / applications are still in an adaptive radiation phase Best Practices are extremely hard to come by do your own bench-marking / optimization Take chances make mistakes! - Ms. Frizzle
4 Workflows see Documentation for examples all workflows must be adjusted for: weird data new technologies new tools the workflow / pipeline can make a big difference to the outcome!
5 Open Source & Reproducibility We use (virtually) all open source tools anyone can read source code & find / fix mistakes! (open source does not mean free) Open source tools don t guarantee reproducibility! The pipeline, commands, environment (hardware, OS), data must also be open. public data archives - NCBI (various), GigaDB, etc. code / commands in public, stable repositories (GitHub, Google Code, etc.)
6 Open Source & Reproducibility The most critical - and commonly missing link in making biological research reproducible is publishing code. Insist on submitting all scripts, with version numbers, as Supplemental Materials.
7 Bioinformatics platforms Linux command line R, bash, Python, Perl, etc. iplant (ianimal, iorganism ) heavy grant, programmer, institutional support growing community Galaxy light (?) support, heavy community support Commercial products like Genious, CLC, etc.
8 Bioinformatics platforms Linux command line will always be most cutting edge most flexible highest learning curve (think months to years) iplant (ianimal, iorganism ) lots of funding = inertia, but requires support from their developers not open source, yet Galaxy longer history = inertia, published workflows, deployed on many public servers open source and relatively easy to develop for Commercial products like Genious, CLC, etc. black boxes (no public review for bugs, algorithm flaws) they develop new tools for you or, they don t
9 Linux command line
10 iplant
11 Galaxy
12 Cloud Computing Cloud computing - either via command line, or stock or customized GUI (e.g. Galaxy) - may be a cost effective solution for a small-ish lab with light computing requirements. "If within an entire year one only needs to run their computers for less than 30% of time then cloud computing may be worth it." ~ Istvan Albert (
13 The Big Picture Own your own Best for heavy compute user; get what you pay for Fully customizable High training barrier to use Public server Often limited compute power, scheduling Not customizable Low training barrier to use Cloud servers Some limits on RAM; unlimited nodes / compute Highly customizable High training barrier to use; some "turn-key"-ish solutions (Galaxy s Cloud button, MIT s StarCluster)
General Comments. J Fass UCD Genome Center Bioinformatics Core Tuesday December 16, 2014
General Comments J Fass UCD Genome Center Bioinformatics Core Tuesday December 16, 2014 Schedule Overview Tuesday - Friday morning lecture and exercises, ad hoc consulting if you brought some data of your
More informationWelcome to the Bioinformatics Workshop!
Welcome to the Bioinformatics Workshop! UCD Genome Center Bioinformatics Core training.bioinformatics@ucdavis.edu bioinformatics.core@ucdavis.edu August 29, 2016 First Notes Non-UCD Folks can log into
More informationAn Interactive Workflow Generator to Support Bioinformatics Analysis through GPU Acceleration
An Interactive Workflow Generator to Support Bioinformatics Analysis through GPU Acceleration Anuradha Welivita, Indika Perera, Dulani Meedeniya Department of Computer Science and Engineering University
More informationHow to organize efficient bioinformatics data analysis workflows
How to organize efficient bioinformatics data analysis workflows Alina Frolova Institute of molecular biology and genetics, Kyiv, Ukraine a.o.frolova@imbg.org.ua 12 Oct 2017, Warsaw, Poland A scientific
More informationFrom Lab Bench to Supercomputer: Advanced Life Sciences Computing. John Fonner, PhD Life Sciences Computing
From Lab Bench to Supercomputer: Advanced Life Sciences Computing John Fonner, PhD Life Sciences Computing A Decade s Progress in DNA Sequencing 2003: ABI 3730 Sequencer Human Genome: $2.7 Billion, 13
More informationAgile Software Production?
Agile Software Production? Andrew Patterson Electric Cloud Europe www.electric-cloud.com Agenda Its not (just) about Agile Development The real issues in the Software Development Lifecycle What are they?
More informationLibelle & Stonebranch
Libelle & Stonebranch SAP System Copy/Refresh Automation with Libelle LSC and Stonebranch UAC SUGG October 6, 2017 Dresden Frank Bayer Director Sales & Marketing Libelle AG Stonebranch/Libelle 2017. All
More informationEvolutionary Genomics
14 March, 2016: Introduction to course 529053 Evolutionary Genomics Topics and aims of this course - evolutionary analysis of genome-scale data - resequencing data, genomic sequence data, homology data
More informationTHE DEVOPS JOURNEY: FROM WATERFALL TO CONTINUOUS DELIVERY
WHITE PAPER THE DEVOPS JOURNEY: FROM WATERFALL TO CONTINUOUS DELIVERY Implementing an agile, DevOps-centered workflow involves several distinct steps. In other words, the process required to evolve from
More informationLARGE DATA AND BIOMEDICAL COMPUTATIONAL PIPELINES FOR COMPLEX DISEASES
1 LARGE DATA AND BIOMEDICAL COMPUTATIONAL PIPELINES FOR COMPLEX DISEASES Ezekiel Adebiyi, PhD Professor and Head, Covenant University Bioinformatics Research and CU NIH H3AbioNet node Covenant University,
More informationTaverna workflows: provenance and reproducibility
Taverna workflows: provenance and reproducibility Aleksandra Pawlik The University of Manchester Workflow approaches to investigation of biological complexity STFC/NERC Workshop 15-16 October 2013 Workflows
More informationChallenges of deploying your HPC application to the cloud
Challenges of deploying your HPC application to the cloud November 12, 2016 Mulyanto Poort, VP Engineering mulyanto@rescale.com 1 Overview Overview of Rescale Challenges of deploying software on Rescale
More informationAn IBM Proof of Technology IBM Workload Deployer Overview
An IBM Proof of Technology IBM Workload Deployer Overview WebSphere Infrastructure: The Big Picture Vertically integrated and horizontally fit for purpose Operational Management & Efficiency IBM Workload
More informationCreating an Enterprise-class Hadoop Platform Joey Jablonski Practice Director, Analytic Services DataDirect Networks, Inc. (DDN)
Creating an Enterprise-class Hadoop Platform Joey Jablonski Practice Director, Analytic Services DataDirect Networks, Inc. (DDN) Who am I? Practice Director, Analytic Services at DataDirect Networks, Inc.
More informationLightweight Virtualization in Cloud Computing for Research
Lightweight Virtualization in Cloud Computing for Research Muhamad Fitra Kacamarga, Bens Pardamean, and Hari Wijaya 1 Bioinformatics & Data Science Research Center, Bina Nusantara University Jakarta, Indonesia
More informationKeep It Simple. White Paper
SUSE Manager Your Linux assets are a complex assortment of servers and workstations running in virtualized, remote cloud and hardware environments. How do you manage all that diversity and still keep it
More informationPre-Requisites A good understanding of Azure data services A basic knowledge of the Microsoft Windows operating system and its core functionality
[MS20776]: Performing Big Data Engineering on Microsoft Cloud Services Length : 5 days Audience(s) : Data Professionals Level : 300 Technology : SQL Server Delivery Method : Instructor-led (Classroom)
More informationISPA, Inc Circle 75 Pkwy, STE 242, Atlanta, GA Phone: P a g e 1
The AgendaMaestro Enterprise Edition provides a simple method of automating the creation of the current and future Agendas. The site license allows for one (1) document class (e.g. Agenda) moving through
More informationIntroduction to iplant Collaborative Jinyu Yang Bioinformatics and Mathematical Biosciences Lab
Introduction to iplant Collaborative Jinyu Yang Bioinformatics and Mathematical Biosciences Lab May/27 th /2016 About iplant What is iplant Collaborative? 1. A virtual organization 2. Created by a cooperative
More informationStarting Bioinformatics from Zero as a Biologist
Starting Bioinformatics from Zero as a Biologist Presented by Jessica Chen, Andrea (Ray) Etter, Peter Cook Sponsored by IEH Laboratories & Consulting Organized by the Developing Food Safety Professionals
More informationOperations as a Service with Rundeck
Operations as a Service with Rundeck Operations as a Service with Rundeck 1 Introduction MOBILE TEAM WEB TEAM ERB TEAM ANALYTICS TEAM BIZ ANALYTICS cloud services web apps in vm packaged apps on bare metal
More informationThe small, medium and large stuff that helps get the job done. Associate Professor Mik Black Department of Biochemistry, University of Otago
G e n o m i c I n f r a s t r u c t u r e f o r N G S The small, medium and large stuff that helps get the job done Associate Professor Mik Black Department of Biochemistry, University of Otago B r i e
More informationSyslog Technologies Innovative Thoughts
EMPLOYEE LEAVE MANAGEMENT SYSTEMANDROIDAPP ABSTRACT: - As a competitive organisation, you need a reliable leave management system to manage employee absence, calculate leave accruals and make payments
More informationGlobus Genomics at GSI Boston University. Dinanath Sulakhe, Alex Rodriguez
Globus Genomics at GSI Boston University Dinanath Sulakhe, Alex Rodriguez July 2014 Agenda 1. Introduction to Globus Genomics - Key features of Globus Genomics - How to use Globus Transfer 2. Introduce
More informationGalaxy. Data intensive biology for everyone. / #usegalaxy
Galaxy Data intensive biology for everyone. www.galaxyproject.org @jxtx / #usegalaxy How can we ensure that complex computational methods are accessible to researchers?...while also ensuring that scientific
More informationlocuz.com Unified HPC Cluster Manager
locuz.com Unified HPC Cluster Manager Ganana Cluster Manager makes it easier for Admins to build Linux based HPC Cluster, and to easily manage their clusters on any x64 hardware. The web-based Portal is
More informationCustomization, Configuration, Development and Extending Boot Camp
Course 822701 Microsoft Dynamics 365 Customization, Configuration, Development and Extending Boot Camp Length 5 days Prerequisites Working knowledge of Dynamics 365 (CRM) features and functionality, development,
More informationWhat is Continuous Integration. And how do I get there
What is Continuous Integration And how do I get there Related Workshops Introduction to DevOps Transform your Organization with DevOps Concepts DevOps Implementation Boot Camp Comprehensive literacy on
More informationReproducible Bioinformatics Project
Reproducible Bioinformatics Project Raffaele A Calogero, Marco Beccuti, Francesca Cordero 05/07/2018 Repeatability versus Reproducibility What is repeatability? Repeatability practices were introduced
More informationCloud Failover Appliance
Cloud Failover Appliance Cloud Failover Appliance (CFA) is an enterprise-grade disaster recovery solution that recovers systems and applications in minutes - without all the hardware and complexity. With
More informationToday I am going to talk about whoi am and who Autotraderand what Autotraderhas achieved in the last 4 years with agile & continuous delivery Crash
Today I am going to talk about whoi am and who Autotraderand what Autotraderhas achieved in the last 4 years with agile & continuous delivery Crash course in what continuous intergration& continuous delivery
More informationBuilding Microsoft Cloud Solutions: A DevOps Perspective
Building Microsoft Cloud Solutions: A DevOps Perspective Stijn Callebaut itnetx Kurt Van Hoecke itnetx It is not the strongest of the species that survives, nor the most intelligent, but the one most responsive
More informationComposites Manufacturing Simulation Center (CMSC) at Purdue University Delivers Next-Gen Learning Environment for Student Success
Composites Manufacturing Simulation Center (CMSC) at Purdue University Delivers Next-Gen Learning Environment for Student Success AGENDA Introductions Project Overview A More in depth look Why Citrix Cloud?
More informationDeployment. 15 Feb Data & Intelligence Global One Team. NTT DATA Mathematical Systems, Inc. NTT DATA Mathematical Systems, Inc.
Data & Intelligence Global One Team NTT DATA Mathematical Systems, Inc. Deployment 15 Feb. 2019 NTT DATA Mathematical Systems, Inc. NTT DATA Mathematical Systems Inc. offers you 1. Optimization Let s PoC
More informationInfoSphere DataStage Grid Solution
InfoSphere DataStage Grid Solution Julius Lerm IBM Information Management 1 2011 IBM Corporation What is Grid Computing? Grid Computing doesn t mean the same thing to all people. GRID Definitions include:
More informationSELECTED APPROACHES AND FRAMEWORKS TO CARRY OUT GENOMIC DATA PROVISION AND ANALYSIS ON THE CLOUD
DOI 10.12694/scpe.v16i1.1058 Scalable Computing: Practice and Experience ISSN 1895-1767 Volume 16, Number 1, pp. 19 35. http://www.scpe.org c 2015 SCPE SELECTED APPROACHES AND FRAMEWORKS TO CARRY OUT GENOMIC
More informationPractical Bioinformatics for Biologists (BIOS493/700)
Practical Bioinformatics for Biologists (BIOS493/700) - Course overview Yanbin Yin Spring 2013 MO444 1 BIOS 643 and 646 Minimum theoretical intro A LOT of practical applications Goal: enhance the use of
More informationGenomic Data Is Going Google. Ask Bigger Biological Questions
Genomic Data Is Going Google Ask Bigger Biological Questions You know your research could have a significant scientific impact and answer questions that may redefine how a disease is diagnosed or treated.
More informationIntegrating Configuration Management Into Your Release Automation Strategy
WHITE PAPER MARCH 2015 Integrating Configuration Management Into Your Release Automation Strategy Tim Mueting / Paul Peterson Application Delivery CA Technologies 2 WHITE PAPER: INTEGRATING CONFIGURATION
More informationNikon Precision's Journey to the PLM Cloud. Ryan Porzel
Nikon Precision's Journey to the PLM Cloud Ryan Porzel Agenda What is Windchill360.com Cloud? Nikon s move to PLM Cloud Questions? 2 What is Windchill360.com Cloud? Hosted on the Amazon Web Services (AWS)
More informationNext Generation Bioinformatics on the Cloud
Next Generation Bioinformatics on the Cloud http://www.easygenomics.com Sifei He Director of BGI Cloud hesifei@genomics.cn Xing Xu, Ph.D Senior Product Manager EasyGenomics BGI xuxing@genomics.cn Contact
More informationGenoLogics LIMS Helps EdgeBio Build Services Business
LIMS Supports ResEarch & clinical NGS services LAB GenoLogics LIMS Helps EdgeBio Build Services Business LIMS Supports Research & Clinical NGS Services LAB GenoLogics LIMS Helps EdgeBio Build Services
More informationBridging the Science - Information Technology Gap
Bridging the Science - Information Technology Gap Presentation Outline Who is the Bioteam? Our HPC and Storage Expertise Our Data Management Solution WikiLIMS Discussion How can BioTeam serve Ignite? BioTeam
More informationOpen Source Telemedicine. Sana Android Client and OpenMRS. Winter 2012 IAP
Open Source Telemedicine Sana Android Client and OpenMRS Winter 2012 IAP Images of phone in this presentation Google. All rights reserved. This content is excluded from our Creative Commons license. For
More informationPractical Bioinformatics for Biologists (BIOS 441/641)
Practical Bioinformatics for Biologists (BIOS 441/641) - Course overview Yanbin Yin MO444 1 Room and computer access Room entry code: 2159 Computer access: user poduser 2 Compared to BIOS 443/643 and 646
More informationWORKSHOP ON RECRUITMENT COSTS SURVEY
WORKSHOP ON RECRUITMENT COSTS SURVEY CAPI & Survey Solutions: An Introduction International Labour Organisation New Delhi, April 26-27,2018 Introduction to CAPI Computer Assisted Personal Interview A face-to-face
More informationBuilding Your Big Data Team
Building Your Big Data Team With all the buzz around Big Data, many companies have decided they need some sort of Big Data initiative in place to stay current with modern data management requirements.
More informationNUIT Tech Talk: Get to Know Research Computing Services
NUIT Tech Talk: Get to Know Research Computing Services March 17, 2016 Pradeep Sivakumar, Sr. HPC Specialist Pascal Paschos, Sr. HPC Specialist Agenda Overview Research Data Networking Research Computing
More informationMigrating to Rose & Cylc ISENES2 Workshop on Workflow Solutions in Earth System Modelling
Migrating to Rose & Cylc ISENES2 Workshop on Workflow Solutions in Earth System Modelling David Matthews, June 2014 Contents This presentation covers the following areas Why? How? When? Challenges Future?
More informationWhat s New. Bernd Wiswedel KNIME KNIME AG. All Rights Reserved.
What s New Bernd Wiswedel KNIME 2018 KNIME AG. All Rights Reserved. What this session is about Presenting (and demo ing) enhancements added in the last year By the team Questions? See us at the booth.
More informationShannon pipeline plug-in: For human mrna splicing mutations CLC bio Genomics Workbench plug-in CLC bio Genomics Server plug-in Features and Benefits
Shannon pipeline plug-in: For human mrna splicing mutations CLC bio Genomics Workbench plug-in CLC bio Genomics Server plug-in Features and Benefits Cytognomix introduces a line of Shannon pipeline plug-ins
More informationPrior to Implementation Once you have purchased or decided to build a system, you will need to answer some basic questions:
The Path to Successful Defect Tracking One of the challenges all software development organizations face is how to handle the defect-tracking (also known as bug tracking) process. Unfortunately, often,
More informationUForge AppCenter 3.8. Introduction March Copyright 2018 FUJITSU LIMITED
UForge AppCenter 3.8 Introduction March 2018 Copyright 2018 FUJITSU LIMITED Enterprise Cloud Application Journey 3 stages in transitioning legacy enterprise applications to cloud: Cloud-hosted applications:
More informationThe world leader in serving science. DataSafe Solutions. Protect your valuable laboratory data
The world leader in serving science DataSafe Solutions Protect your valuable laboratory data Central and secure storage of laboratory data is critical to the success of your organization. The ability to
More informationMasterScope JobCenter White Paper. June, 2017 NEC Corporation
MasterScope JobCenter White Paper June, 2017 NEC Corporation Outline 1.Introduction 2.Challenges 3.Solution 4.MasterScope JobCenter 5.Use Case 1. Introduction Manpower Shortage in IT System Division leads
More informationRandom matrix analysis for gene co-expression experiments in cancer cells
Random matrix analysis for gene co-expression experiments in cancer cells OIST-iTHES-CTSR 2016 July 9 th, 2016 Ayumi KIKKAWA (MTPU, OIST) Introduction : What is co-expression of genes? There are 20~30k
More informationEMBL-ABR Node Application Form
EMBL-ABR Node Application Form Table of Contents EMBL-ABR Node Application Form... 1 Part A: Summary of EMBL-ABR Node... 2 A1: Synopsis... 2 A2: Snapshot of services/activities... 4 Part B: Administrative
More informationAzure ML Studio. Overview for Data Engineers & Data Scientists
Azure ML Studio Overview for Data Engineers & Data Scientists Rakesh Soni, Big Data Practice Director Randi R. Ludwig, Ph.D., Data Scientist Daniel Lai, Data Scientist Intersys Company Summary Overview
More informationSimulating innovative and disruptive business strategies. AnyLogic Conference 2016 Lyle Wallis, Analytics Director, PwC
www.pwc.com/us Simulating innovative and disruptive business strategies November 16-17 2016 AnyLogic Conference 2016 Lyle Wallis, Analytics Director, PwC Innovation in products, markets, and business models
More informationMaintenance is Dead! A path to a New Paradigm
Maintenance is Dead! A path to a New Paradigm Ali Hashmi Director - Expresscommerce Today s Plan Maintenance is Dead! The paradigm Shift Your website is a living thing Role of DevOps in website Maintenance
More informationSUGGESTED SOLUTION IPCC November-17 EXAM. Test Code I N J 7005
SUGGESTED SOLUTION IPCC November-17 EXAM INFORMATION TECHNOLOGY Test Code I N J 7005 BRANCH - (MULTIPLE) (Date :21.05.2017) Head Office : Shraddha, 3 rd Floor, Near Chinai College, Andheri (E), Mumbai
More informationTHE DEVOPS MATURITY CURVE. Justin Vaughan-Brown CA Technologies
THE DEVOPS MATURITY CURVE Justin Vaughan-Brown CA Technologies Today s Business Environment 2 2014 CA. ALL RIGHTS RESERVED. Today s Business Environment 3 2014 CA. ALL RIGHTS RESERVED. Today s Business
More informationThe first and only fully-integrated microarray instrument for hands-free array processing
The first and only fully-integrated microarray instrument for hands-free array processing GeneTitan Instrument Transform your lab with a GeneTitan Instrument and experience the unparalleled power of streamlining
More informationHPC in the Cloud Built for Atmospheric Modeling. Kevin Van Workum, PhD Sabalcore Computing Inc.
HPC in the Cloud Built for Atmospheric Modeling Kevin Van Workum, PhD Sabalcore Computing Inc. kevin@sabalcore.com About Us HPC in the Cloud provider since 2000 Focused on Engineering and Scientific application
More informationMore Science, Less Computer Science
More Science, Less Computer Science Jeff Yamamoto, Senior Alliance Manager, Asia Pacific Platform Computing SC 11 TORONTO 11/22/2011 Agenda Overview Platform Computing & Fujitsu Partnership PCM Fujitsu
More informationMitchell CI/CD Journey Continues. Richard Fong (Raj) Rajwinder Singh Makkar
Mitchell CI/CD Journey Continues Richard Fong (Raj) Rajwinder Singh Makkar Introduction Mitchell International Founded in 1946, with 70 years of experience in Property, Casualty claims, and Collision Repair
More informationBusiness is being transformed by three trends
Business is being transformed by three trends Big Cloud Intelligence Stay ahead of the curve with Cortana Intelligence Suite Business apps People Custom apps Apps Sensors and devices Cortana Intelligence
More informationWhy is this Job Description being written? New Position Replacement Position Position re-designed Position not previously described
Why is this Job Description being written? New Position Replacement Position Position re-designed Position not previously described P O SITION DET AI L S: Position Title: B IOINFOR MA T ICS SYSTEMS SP
More informationBuilding a better product with data analytics and the cloud
IBM Software Building a better product with data analytics and the cloud Kevin Smith (smithk6@uk.ibm.com) Test Architect, WebSphere Application Server Liberty Profile The drive towards continuous delivery
More informationUnderstanding The Value of Containers in a World of DevOps. Advice that empowers. Technology that enables.
Understanding The Value of Containers in a World of DevOps Advice that empowers. Technology that enables. Bradley Brodkin - Some Background Founder & CEO of HighVail Systems, Toronto CANADA 31+ year industry
More informationCommvault XaaS Solutions for Service Providers
Commvault XaaS Solutions for Service Providers DELIVERING AN EASILY SCALABLE, FEATURE RICH MULTI-TENNANT SOLUTION KEY BENEFITS Lower Infrastructure Costs Commvault software s singular platform shares heterogeneous
More informationConnecting with eresearch Services
Connecting with eresearch Services 1st April 2016 eresearch Services, INS Who are we? eresearch Services (ers) Director eresearch Services (Malcolm Wolski) QRISCloud National Relations Manager (Andrew
More informationLabOptimize LIMS. Laboratory Tracking Platform
LabOptimize LIMS Laboratory Tracking Platform BioSoft Integrators offers a comprehensive solution to address tracking, process security, analysis and reporting of data with flexibility, scalability and
More informationProvisioning Oracle 11g R2 RAC using Enterprise Manager Provisioning Pack. Kai Yu Oracle Solutions Engineering Lab Dell Inc.
Provisioning Oracle 11g R2 RAC using Enterprise Manager Provisioning Pack Kai Yu Oracle Solutions Engineering Lab Dell Inc. About Author Kai Yu, kai_yu@dell.com 16 years with Oracle Technology: DBA, Apps
More informationWho is Databricks? Today, hundreds of organizations around the world use Databricks to build and power their production Spark applications.
Databricks Primer Who is Databricks? Databricks was founded by the team who created Apache Spark, the most active open source project in the big data ecosystem today, and is the largest contributor to
More informationWhat is your definition of DevOps?
DevOps What is your definition of DevOps? Steve Boone DevOps SME @Steve_Boone 1 Jez Humble: Continuous Delivery DevOps is much of the how of achieving continuous delivery 2 DevOps IBM s Definition: DevOps
More informationDATAPATH CASE STUDY EXECUTIVE SUMMARY THE RESULT THE SOLUTION THE CHALLENGE
EXECUTIVE SUMMARY THE CHALLENGE Provide quickly customizable network monitoring solutions in broadcast communications, government, and commercial systems Ensure stability and 24/7 uptime for critical monitoring
More informationCSIRO Galaxy Bioinformatics Portal
CSIRO Galaxy Bioinformatics Portal User Friendly Bioinformatics on HPC Joel Ludbey Technical Solutions Engineer May 2018 IM&T SCIENTIFIC COMPUTING Overview What is the Galaxy portal? How does it tie into
More informationPlan, Deploy and Configure Microsoft InTune
Plan, Deploy and Configure Microsoft InTune 5 Day Course AUDIENCE IT Pros that have experience with Windows 10 use, deployment and management Experience with any optional ios or Android devices. FORMAT
More informationIllumina Read QC. UCD Genome Center Bioinformatics Core Monday 29 August 2016
Illumina Read QC UCD Genome Center Bioinformatics Core Monday 29 August 2016 QC should be interactive Error modes Each technology has unique error modes, depending on the physico-chemical processes involved
More informationSolution Brief Patent insight Pro Enterprise
Solution Brief Patent insight Pro Enterprise Organizing Enterprise Intellectual Property Knowledge Management (IPKM) Current State of Enterprise IP Research and Analysis Management of ongoing IP Research
More informationStuck with Power BI? Get Pyramid Starting at $0/month. Start Moving with the Analytics OS
Stuck with Power BI? Start Moving with the Analytics OS Get Pyramid 2018 Starting at $0/month Start Moving with Pyramid 2018 Break Away from Power BI Many organizations struggle to meet their analytic
More informationGlobus Genomics: An End-to-End NGS Analysis Service on the Cloud for Researchers and Core Labs
Globus Genomics: An End-to-End NGS Analysis Service on the Cloud for Researchers and Core Labs Ravi K Madduri, University of Chicago and Argonne National Laboratory madduri@uchicago.edu @madduri Our vision
More informationUAB Condor Pilot UAB IT Research Comptuing June 2012
UAB Condor Pilot UAB IT Research Comptuing June 2012 The UAB Condor Pilot explored the utility of the cloud computing paradigm to research applications using aggregated, unused compute cycles harvested
More informationSystem and Server Requirements
System and Server Requirements January 2019 For GreeneStep ERP, CRM, Ecommerce, Customer/Supplier Collaboration, Management Dashboards and Web Access Products Suite ON-PREMISE DEPLOYMENT MODEL & HOSTED
More informationSimplifying Application Deployment in Cloud using Virtual Assemblies and EM 12c Kai Yu Oracle Solutions Engineering Dell Inc
Simplifying Application Deployment in Cloud using Virtual Assemblies and EM 12c Kai Yu Oracle Solutions Engineering Dell Inc About Author Kai Yu, Senior Principal Architect, Dell Database Engineering 20
More informationBlackPearl Customer Created Clients for Media & Entertainment Using Free & Open Source Tools
BlackPearl Customer Created Clients for Media & Entertainment Using Free & Open Source Tools Contents ABSTRACT... 3 INTRODUCTION... 3 BULDING A CUSTOMER CREATED CLIENT... 5 BlackPearl Simulator... 5 Eon
More informationAvoid the Hype and Find Real Value in Devops and PaaS ABDUL KHALIQ GAFFAR
Avoid the Hype and Find Real Value in Devops and PaaS ABDUL KHALIQ GAFFAR AGENDA DevOps: Problem statement, what, and why How to enable DevOps Cloud Architecture PaaS OpenShift How OpenShift Accelerates
More informationCloud Computing Lecture 3
Cloud Computing Lecture 3 1/17/2012 Agenda IaaS PaaS SaaS Identity as a service Compliance as a service Identify service model AnyPresence Co-Founder, CEO: Anirban "AC" Chakrabarti AnyPresence s cloud-based
More informationCURRENTS. A quarterly report on developer trends in the cloud
CURRENTS A quarterly report on developer trends in the cloud Key findings include: Introduction The landscape developers work in is ever-changing. The best way to truly understand how developers work and
More informationDeakin Research Online
Deakin Research Online This is the published version: Church, Philip, Goscinski, Andrzej, Wong, Adam and Lefevre, Christophe 2011, Simplifying gene expression microarray comparative analysis., in BIOCOM
More informationComputational Challenges of Medical Genomics
Talk at the VSC User Workshop Neusiedl am See, 27 February 2012 [cbock@cemm.oeaw.ac.at] http://medical-epigenomics.org (lab) http://www.cemm.oeaw.ac.at (institute) Introducing myself to Vienna s scientific
More informationINTER CA NOVEMBER 2018
INTER CA NOVEMBER 2018 Sub: ENTERPRISE INFORMATION SYSTEMS Topics Information systems & its components. Section 1 : Information system components, E- commerce, m-commerce & emerging technology Test Code
More informationThe Mainframe s Relevance in the Digital World
The Mainframe s Relevance in the Digital World You Don t Have to Own IT to Control IT SM Executive Summary According to Robert Thompson of IBM, 68 percent of the world s production workloads run on mainframes,
More informationNOW GENERATION SEQUENCING. Monday, December 5, 11
NOW GENERATION SEQUENCING 1 SEQUENCING TIMELINE 1953: Structure of DNA 1975: Sanger method for sequencing 1985: Human Genome Sequencing Project begins 1990s: Clinical sequencing begins 1998: NHGRI $1000
More informationIAC Publishing Labs Turns Data into a Business Accelerator with Snowflake on AWS
IAC Publishing Labs Turns Data into a Business Accelerator with Snowflake on AWS CUSTOMER PARTNER IAC Publishing Labs Snowflake Headquartered in Oakland, California s vibrant tech district, IAC Publishing
More informationManufacturing Execution System MES-360 CONTINUOUS IMPROVEMENT SOFTWARE FOR THE ENTIRE LAB. Optical Manufacturing Solutions.
Manufacturing Execution System MES-360 CONTINUOUS IMPROVEMENT SOFTWARE FOR THE ENTIRE LAB Optical Manufacturing Solutions. MES-360 MANUFACTURING EXECUTION SYSTEM FOR THE OPTICAL INDUSTRY MES-360 Explained
More informationCURRENTS. A quarterly report on developer trends in the cloud
CURRENTS A quarterly report on developer trends in the cloud Key findings include: Introduction Developers aren t worried about vendor lock-in 77 percent said it was not a factor when choosing a cloud
More informationSOTI ONE NOVEMBER 2018 UPDATE
ONE PLATFORM - CONNECTING EVERYTHING SOTI ONE NOVEMBER 2018 UPDATE OVERVIEW As mobile technology drives deeper and wider into organizations, business-critical mobility is changing. More workers within
More information