Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis

Size: px
Start display at page:

Download "Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis"

Transcription

1 Development 121, (1995) Printed in Great Britain The Company of Biologists Limited Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis Stephen C. Ekker 1, *, L. Lynn McGrew 2, *, Cheng-Jung Lai 2, *, John J. Lee 1, *, Doris P. von Kessler 1, Randall T. Moon 2, and Philip A. Beachy 1, 1 Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine and Howard Hughes Medical Institute, Baltimore, MD 21205, USA 2 Department of Pharmacology, University of Washington School of Medicine and Howard Hughes Medical Institute, Seattle, WA 98195, USA *Contributed equally to this work Authors for correspondence ( rtmoon@u.washington.edu) SUMMARY The hedgehog family of signaling proteins is associated with a variety of spatial patterning activities in insects and vertebrates. Here we show that new members of this family isolated from Xenopus laevis are expressed embryonically in patterns suggestive of roles in patterning in the ectoderm, nervous system and somites. Banded hedgehog is expressed throughout the neural plate and subsequently in both the nervous system and in the dermatome of somites. Cephalic hedgehog is expressed in anterior ectoderm and endodermal structures, and sonic hedgehog is expressed in patterns which parallel those in other species. Injection of RNAs encoding Xenopus hedgehogs induces ectopic cement gland formation in embryos. Similar to reported activities of noggin and follistatin, Xenopus hedgehogs share a common ability to induce cement glands in animal cap explants. However, hedgehog activities in naive ectoderm appear capable of acting independently of noggin and follistatin since, although all three are induced by activin in animal cap explants, X-hh expression does not induce noggin or follistatin. Key words: hedgehog, neural induction, cement gland, follistatin, noggin, Xenopus laevis INTRODUCTION The hedgehog family of secreted signaling proteins represents a recent addition to the known repertoire of molecules employed by vertebrates in the establishment of embryonic pattern. Originally identified by Nüsslein-Volhard and Wieschaus (1980), the hedgehog gene functions in Drosophila to help coordinate the identities of cells within embryonic segments (reviewed by Hooper and Scott, 1992; see also Heemskerk and DiNardo, 1994), and later in the patterning of adult precursors including the appendages and the eye (Mohler, 1988; Ma et al., 1993; Heberlein et al., 1993; Tabata and Kornberg, 1994; Basler and Struhl, 1994). Whereas only single hedgehog genes have been found in Drosophila and several other invertebrate species (Chang et al., 1994), hedgehog genes in vertebrates constitute a multi-gene family (Echelard et al., 1993; Krauss et al., 1993; Chang et al., 1994), with the sonic hedgehog class (shh; also referred to as vhh-1 or Hhg-1) receiving the greatest degree of experimental attention. Studies of embryonic expression and function suggest that shh plays a role in dorsoventral patterning of the neural tube and somites (Echelard et al. 1993; Krauss et al., 1993; Roelink et al., 1994; Fan and Tessier-Levigne, 1994; Johnson et al., 1994) and in anteroposterior patterning of the developing limb (Riddle et al., 1993; Chang et al., 1994; Niswander et al., 1994; Laufer et al., 1994). Since the shh class of hedgehog genes has been the major focus of experimental effort in vertebrates, little is known regarding the expression and functions of other vertebrate hedgehog family members. In particular, it is unclear whether distinct hedgehog genes have related activities and whether hedgehog genes play early roles in such processes as mesodermal or neural induction and patterning. Since Xenopus remains the vertebrate most amenable to examination of embryonic signaling processes that are involved in mesodermal and neural induction (reviewed by Harland, 1994), analyses of Xenopus hh genes (X-hh) provide the opportunity to place this newly described class of signaling molecules within the context of well studied signaling pathways. We report here the isolation of four X-hh family members, which constitute three distinct classes of X-hh proteins. One of these represents the Xenopus homologue of the previously reported sonic hedgehog (X-shh) class. The other two, banded hedgehog (X-bhh) and cephalic hedgehog (X-chh), display novel patterns of hh expression. Since high level expression of all four family members induces ectopic cement gland formation in animal cap explants, suggesting qualitatively similar activities for these proteins, we focused on the activities of X-bhh as representative of X-hh activities

2 2338 S. C. Ekker and others in general. High level expression in whole embryos and in animal cap explants leads to direct induction of cement gland, which is also a reported activity of the neural inducers noggin (Lamb et al., 1993) and follistatin (Hemmati-Brivanlou et al., 1994). X-hh inducing activities can act independently of noggin and follistatin since, although all three are induced by activin, X-bhh expression in animal cap explants is neither induced by nor induces noggin and follistatin. MATERIALS AND METHODS Isolation of X-hh cdnas Fragments of X-hh sequences were isolated from genomic DNA using degenerate primers in PCR reactions as described (Chang et al., 1994). Using these fragments as probes, four distinct full-length cdnas were obtained from a Xenopus laevis stage 24 developmental library (Richter et al., 1988). One of the initial X-hh fragments isolated by PCR amplification did not yield a cdna in this screen. The regions encoding the predicted open reading frames (Fig. 1) were sequenced on both strands as recommended (US Biochemicals). All four open reading frames are closed upstream of the initiating methionine (data not shown). Part of the X-shh open reading frame was confirmed through the isolation of the corresponding region from genomic DNA (data not shown). Expression of X-hh RNAs during development and RT- PCR analyses Northern analyses were performed using poly(a)-containing RNA isolated from various developmental stages (McGrew et al., 1992). Aliquots of total RNA were digested with RNAse-free DNAse (Promega) and approximately 5 µm was used as template to generate first strand cdna according to manufacturer s instructions (Life Sciences, Inc.); 1/20th of this cdna was used as template in subsequent RT-PCR analyses. Control tubes contained everything except reverse transcriptase and were run in parallel with the experimental reactions, and were negative in each case. Detection of X-bhh was done using primers C1 (5 -TACGGAATGCTGGCTAGG-3 ) and C2 (5 -CCCACTGTTGTCCATCGC-3 ) in standard RT-PCR conditions with the following reaction profile: 94 C for 1 minute, 58 C for 1 minute, and 72 C for 1 minute, for 30 cycles. The resulting product was sequenced directly to confirm its identity. Detection of histone H4 was as described by Niehrs et al. (1994). Relative levels of transcripts encoding EF-1α and XAG-1 were assayed by RT-PCR as described in the accompanying paper (Lai et al., 1995), and noggin and follistatin transcripts were monitored by RT-PCR as described (Hemmati-Brivanlou et al., 1994). Injection constructs The expression construct pt7ts-x-bhh was made by insertion of the X-bhh open reading frame into the SpeI site of the vector pt7ts (gift from A. Johnson and P. Kreig, University of Texas at Austin). The open reading frame fragment was generated by PCR using cdna as template with primers bhh-u (5 -GGACTAGTCACCATGCAGT- TGCCCAAGGT-3 ) and bhh-d (5 -AGCATACTAGTAGGCTCA- GCTTTCCAACTG-3 ). Similarly, expression construct pt7ts-x-shh was made by insertion of the X-shh open reading frame into the BglII site of pt7ts using primers shh-u (5 -ATATGGATCCCGAGAT- GCTGGTTGCGACTCA-3 ) and shh-d (5 -GCGCGGATCCTTT- TTCAACTGGATTTCGTTG-3 ) in PCR reactions and subsequent BamHI digestion of the resulting PCR product. Construct pt7ts-xshh fs contains a single base pair insertion after nucleotide 117; the resulting open reading frame encodes the first 39 amino acids of X- shh and continues for 6 more amino acids in the alternate reading frame before terminating. Expression constructs psp64-x-chh and psp64-x-hh4 were made by insertion of the open reading frames into BglII site of plasmid psp64t. Open reading frames were generated using primers chh-u (5 -ATATGGATCCGGACATGCCAGC- AGTCCGGATT-3 ) and chh-d (5 -CGCGGGATCCTAAATT- AAGGCATATCCCACCA-3 ) for X-chh and primers hh4-u (5 - ATATGGATCCGGACATGCCAGCAGTCCGGATT-3 ) and hh4-d (5 -CGCGGGATCCTAATTTAAGGCATATCCCACCA-3 ) for X- hh4 in PCR reactions and subsequent BamHI digestion. A noggin expression construct in the vector psp64t was generated by PCR of the coding region of the reported noggin sequence, and was also provided by Richard Harland (University of California, Berkeley). A follistatin expression construct in the vector pt7ts was generated by PCR of the coding region of the reported Xenopus follistatin coding sequence (Hemmati-Brivanlou et al., 1994), using the forward primer 5 -GAAGATCTCCCAGCACTGAGGATG-3 and the reverse primer 5 -GGACTGGTCACTTACAGTTGCAAGATC- 3. The resulting construct was sequenced. In situ hybridization and immunohistochemistry Whole-mount in situ hybridizations were performed according to Harland (1991). For histological examination embryos were embedded in paraffin and 8-10 µm sections were prepared (Kelly et al., 1991). Detection of the monoclonal antibody 12/101 (Kintner and Brockes, 1984) was according to the method of Klymkowsky and Hanken (1991). Detection of β-galactosidase activity after coinjection of lacz and X-bhh RNAs was performed according to the method of Westerfield et al. (1992) using 6-chloro-3-indolyl-β-galactopyranoside (Biosynth AG, Switzerland) as substrate, followed by in situ hybridization for XAG-1. Embryo manipulations RNA was synthesized from X-hh pt7ts-based constructs and injected by standard methods (Moon and Christian, 1989). Embryos were injected with the indicated amounts of synthetic mrna in the animal pole of each blastomere at the 2-cell stage, then cultured (Moon and Christian, 1989) and analyzed as indicated. In experiments involving animal caps, the explants were made from stage 8 blastulas as in the accompanying paper (Lai et al., 1995). After further incubation to the stages indicated for sibling embryos, explants were subjected to in situ hybridization as described above or to RT-PCR reactions as described above. RESULTS Isolation of a family of Xenopus hedgehog homologues Degenerate primers were used in PCR reactions with genomic DNA as template as described (Chang et al., 1994), and the resulting X-hh gene fragments were used as probes to screen a stage 24 cdna library (Richter et al., 1988). Four distinct family members were isolated, and the predicted protein products are shown in Fig. 1A. Xenopus cephalic hh (X-chh) and X-hh4 are closely related (93% amino acid identity) while the other two X-hh family members are more divergent (Fig. 1B). The high degree of identity between X-chh and X-hh4 relative to the other X-hh family members suggests a recent gene duplication event in the Xenopus lineage and our analysis consequently focused primarily on one of these two, X-chh. Like all other known vertebrate hh genes, these X-hh genes contain an amino-terminal signal sequence indicating probable secretion of X-hh protein products in vivo. Comparison of X- hh genes with murine hh genes indicates that Xenopus banded hedgehog (X-bhh) is most similar to mouse Indian hh (70%

3 hedgehog gene family of Xenopus 2339 Fig. 1. Four members of the Xenopus laevis hedgehog gene family. (A) Predicted amino acid sequences of X-shh, X-bhh, X-chh, and X-hh4 are aligned and given in the single letter code. Residues identical in all four sequences are boxed, and a dash indicates a gap in the alignment. The predicted amino-terminal signal sequence (von Heijne 1986) indicated by the solid black bar, ends just before the highly conserved CGPGR sequence. Predicted sites of N-linked glycosylation are indicated by asterisks, and the presumed site of autoproteolytic cleavage is indicated by the arrow (see accompanying article by Lai et al., 1995). GenBank accession nos: Xshh, U26314; Xbhh, U26404; Xchh, U26349 and Xhh4, U (B) Percentage identity of residues carboxy-terminal to the signal sequence. (C) Developmental profile of X-bhh mrna expression (upper panel) relative to control histone H4 (lower panel), as determined by RT- PCR (see Materials and methods). The developmental stages, according to Nieuwkoop and Faber (1967), are given above each lane, with lane numbers at the bottom. X-bhh transcripts were not detected by northern analysis, though in independent RT-PCR reactions, expression was detected as early as stage 8 (data not shown). (D,E) Developmental profiles of X- shh, X-chh, and the control transcript Gαs-1 (Otte et al., 1992, bottom) as determined by northern analysis. amino acid identity) and X-chh and X-hh4 are most similar to mouse Desert hh (64% and 63% amino acid identities, respectively). Based upon its expression pattern (see below) and high sequence identity to mouse sonic hh (78%), X-shh appears to represent the Xenopus homologue of sonic/vhh-1/hhg-1. The spatial patterns of expression for X-bhh and X-chh (see below) are novel among reported vertebrate hh genes and thus define two new classes of vertebrate hh gene expression during development. Expression of X-hh transcripts is temporally and spatially restricted Steady-state transcript levels for X-bhh, X-shh and X-chh (Fig. 1C-E) indicate a peak of gene expression during neural induction and early organogenesis. Expression of X-bhh was monitored by RT-PCR since it is expressed at lower levels than the other two genes. Additional cycles of PCR begin to show X-bhh bands in the minus RT control, but longer exposure of films and independent experiments detect specific amplification of X-bhh transcript by stage 8 (data not shown). Transcript localization by in situ hybridization showed that transcripts from all three of these genes are localized to the sub-epithelial layer of the marginal zone with no dorsal or ventral bias at early gastrulation (Fig. 2A,E,I). Differences in X-hh expression become apparent at or before stage 14, with X-bhh expression observed in peripheral regions of the neural plate (arrows, Fig. 2B), but not in the presumptive midline (arrowhead, Fig. 2B; see Hausen and Riebesel, 1991 for description of early embryogenesis). At neural tube closure, a prominent anterodorsal patch of X-bhh expression is observed (Fig. 2C, arrow) with more diffuse expression apparent in the somitic and pre-somitic mesoderm. By the early tadpole (stages 28-30), widespread expression is observed throughout anterior structures with highest levels in the otic vesicle, the eye, and the branchial arches (Fig. 2D; ov, e, ba). Also by this stage, mesodermal expression of X-bhh occurs as an array of

4 2340 S. C. Ekker and others Fig. 2. Localization of X-hh transcripts during early development. Localizations of X-hh transcripts during development are revealed by in situ hybridization to embryos with antisense probes for X-bhh (A-D), X-shh (E-H), and X-chh (I-K). (A) Side view of an early gastrula embryo (stage 10), with animal hemisphere up. X-bhh transcripts are localized to the sub-epithelial layer of the entire marginal zone (arrow). (B) Anterior view of a neurula embryo (stage 14). X-bhh expression occurs throughout most of the neural plate, with strongest expression along the lateral border (arrows) and no expression along the midline (arrowhead). (C) Lateral view of a late neurula embryo, after neural tube closure (stage 19/20). The most prominent domain of X-bhh expression is in the anterior of the embryo (arrow), with more diffuse expression observed posteriorly in the mesoderm. (D) Lateral view of a tailbud embryo (stage 28) with anterior toward the left. High levels of X-bhh transcripts are seen in specific structures of the head including the eye (e), otic vesicle (ov) and branchial arches (ba). X-bhh transcripts are also localized in a chevron-shaped band within each somite, predominantly within the dermatome (see text; data not shown). (E) Side view of an early gastrula embryo (stage 10), with animal hemisphere up. X-shh transcripts are most prominent in the sub-epithelial layer of the entire marginal zone (the lower and upper arrows mark the dorsal and ventral sides of the embryo, respectively). With more extended incubation during the color reaction, lower level expression can be seen to extend over the animal hemisphere (not shown). (F) Anterior view of a neurula embryo (stage 14). X-shh expression is restricted to the presumptive midline (arrowhead) and is absent from the rest of the neural plate (arrows). (G) Lateral view of a late neurula embryo (stage 19/20) with anterior to the left. X-shh expression is in the notochord and ventral neural tube with the most prominent expression observed in an anterior domain (arrow). (H) Lateral view of a tailbud embryo (stage 29/30) with anterior toward the left. X-shh is expressed exclusively in cells of the notochord (n) and floorplate (fp) throughout the axis. Strong expression in the brain and other anterior structures persists. (I) Side view of an early gastrula embryo (stage 10), with animal hemisphere up. X-chh expression extensively overlaps that of X-bhh and X-shh and is most prominent in a band of cells within the marginal zone (arrow). (J) Top view of a mid-neurula embryo (stage 15/16) with anterior to the left. X-chh transcripts are most abundant in an extreme anterior domain of the embryo; the anterior portion of the neural plate is indicated by the arrows. (K) Lateral view of a tailbud embryo (stage 29/30) with anterior to the left. Low levels of X-chh transcripts are present in the pharyngeal cavity. (L) Side view of a tailbud embryo hybridized with a X-bhh sense probe as a control.

5 hedgehog gene family of Xenopus 2341 Fig. 3. Expression of X-bhh in mesoderm and ectodermal derivatives. Whole embryos, hybridized in situ with a probe specific for X-bhh transcripts, were embedded in paraffin and sectioned (see Materials and methods). (A) Sagittal section of a stage 14 neurula with anterior to the left. X-bhh transcripts are most prominent in the sub-epithelial and epithelial layers of the neuroectoderm but are also present at lower levels in the underlying chordamesoderm (see arrows in the insert), (np) neural plate, (a) archenteron. (B) Parasagittal section through the head of a stage 28 tailbud embryo with anterior to the left. X-bhh-expressing cells are seen in the sub-epithelial layer of the ectoderm (arrows), just dorsal to the cement gland (cg); (e) eye. (C) Transverse section of a stage 28 embryo at the level of the eye (e). X-bhh expression is found in both the superficial and deep layers throughout the roof of the mesencephalon (me). Expression is also observed prominently in the prospective retinal layer of the eye vesicle (e). (D) Transverse section of a stage 28 embryo at the level of the otic vesicle (ov). X-bhh expression is seen in the dorsal roof of the rhombencephalon (rh), and in the epithelial layer of the ectoderm. Expression is also prominent in the otic vesicle (ov), (n), notochord. (E) Para-sagittal section through the head of a stage 28 embryo with anterior to the left. X- bhh transcripts are detected in the dorsal mesencephalon and rhombencephalon (arrows) and in the branchial arches (arrowheads). (F) Dorsal view of a whole tailbud embryo (stage 23) with anterior to the left. The embryo has been double-labeled by in situ hybridization with a probe specific for X-bhh transcripts prior to immunostaining with monoclonal antibody 12/101, specific for the myotomal portion of the somite (Kintner and Brockes, 1984). A block of two adjacent somites (s) is delimited by the arrows. (G) Lateral view of the embryo in F, at higher magnification, and with anterior to the left. The brown 12/101 stain highlights the myotome of each somite (area between two arrows); the dark blue X-bhh stain is localized to a single central portion of the dermatome of each somite (see text; data not shown). (H) Glancing section in the plane of the dermatome of an embryo similar to that in F with anterior to the left. The arrows demarcate the boundaries of a single somite and the arrowhead denotes X-bhh staining.

6 2342 S. C. Ekker and others chevron-shaped bands, delineating the somites and suggesting the name banded (Fig. 2D; arrowhead). Expression of X-shh in the early gastrula is also localized to the sub-epithelial layer of the marginal zone (Fig. 2E, arrows), but differs from X-bhh in showing a low level of expression throughout the animal pole. Expression in the early neurula is largely restricted to the midline (Fig. 2F, arrowhead), in marked contrast to the broad distribution of X-bhh transcripts throughout the neural plate during the same period (Fig. 2B). By stage 20, after neural tube closure, X-shh expression is localized to the axial mesoderm including the prechordal plate as well as the entire ventral midline of the neural tube (Fig. 2G; histology not shown) and, as noted with X-bhh, expression is elevated in anterior structures. A similar pattern of expression occurs throughout later development in the notochord and floorplate (Fig. 2H; n, fp) which parallels expression in other species. The expression of X-chh in the marginal zone is similar to that of both X-bhh and X-shh during early gastrulation (Fig. 2I). In the neurula X-chh displays a novel pattern of expression that is restricted exclusively to anterior structures, encompassing both neural plate and endodermal cells and providing the basis for the name cephalic (Fig. 2J). Thereafter, expression is observed on the inner surface of the pharynx at the early tadpole stage (Fig. 2K), and the overall decline in signal corresponds to the observed decline in steady-state levels of transcript (Fig. 1E). Expression of X-bhh was further examined by embedding and sectioning of whole embryos after in situ hybridization. A sagittal section through a stage 14 neurula demonstrates a high level of X-bhh expression in both layers of the neuroectoderm with lower levels of expression in the underlying chordamesoderm (Fig. 3A and insert; see arrows). Later in embryonic development X-bhh continues to be expressed in both neural and non-neural tissues. For example, a sagittal section through a tailbud embryo (arrows, Fig. 3B) shows expression of X-bhh in sub-epithelial ectodermal cells that border the cement gland but not within the adjacent neuroepithelium in the prosencephalon. A transverse section through a similar stage embryo at the level of the eyes (Fig. 3C) demonstrates strong expression in both the roof of the mesencephalon and in the lateral wall of the eye vesicle, but also lower levels of expression in the sub-epithelial layer of the epidermis. More posteriorly at the level of the rhombencephalon (Fig. 3D), X- bhh-expressing cells are still localized to the dorsal portion of the neural tube with particularly abundant expression also observed in the otic vesicle that invaginates from the subepithelial layer of the epidermis. Fig. 3E shows a parasagittal section that highlights the diffuse signal along the dorsal mesencephalon and rhombencephalon (arrows) as well as expression in the branchial arches (arrowheads, Fig. 3E). To further characterize X-bhh expression in somitic mesoderm, early tailbud stage embryos were double-labeled (Fig. 3F) by in situ hybridization to detect X-bhh and with the antibody 12/101 (Kintner and Brockes, 1984) to highlight the myotomal portion of the somite. A lateral view of the same embryo (Fig. 3G) indicates that X-bhh expression is localized to the midline of each somite (arrows demarcate somite boundaries). This is seen more clearly in a parasagittal section of a similarly staged embryo (Fig. 3H; arrowhead denotes X-bhh expression between somite boundaries, marked by arrows). Fig. 4. Injection of X-bhh mrna induces enlarged and ectopic anterior ectodermal and neural structures. Embryos at the two cell stage were injected with synthetic lacz (A,C) or X-bhh mrna and the resulting tadpoles were subjected to whole-mount in situ hybridization with probes for the XAG-1 cement gland marker (A,B) and the XANF-2 anterior pituitary gland marker (C,D) (see Materials and methods). lacz-injected embryos display wild-type patterns of XAG-1 (A) and XANF-2 (C) expression; X-bhh-injected embryos, in contrast, display enlarged (white arrows in B and D) and ectopic (arrowheads in B) cement glands and an expanded region of labeling with the anterior pituitary marker (compare dark arrows in C and D). Normal and expanded cement glands in panels C and D (white arrows) are visible due to natural pigmentation. (E) Embryos coinjected with lacz and X-bhh RNAs into both dorsal tier one cells of the 32 cell embryo develop with foci of XAG-1 expression (arrowheads) in only a subset of cells expressing β-galactosidase (red-brown stained cells beneath the bracket). Transverse sections through the trunk of a slightly later stage embryo demonstrate that X-bhh-expressing cells are on the perimeter of the myotome, with greatest expression in the dermatome (data not shown), at a location reminiscent of that reported for expression of Xwnt-11 (Ku and Melton, 1993). Embryos doubly stained for the expression of Xwnt-11, by in situ hybridization, and for the expression of X-bhh, by wholemount immunohistochemistry with an anti-peptide antibody (Lai et al., 1995), provide the suggestion that Xwnt-11 and X-

7 hedgehog gene family of Xenopus 2343 Fig. 5. Cement gland induction in animal cap explants from X- bhh-injected embryos. (A) Uninjected tailbud embryo stained for expression of the cement gland marker XAG-1 by in situ hybridization (white arrow). (B) Histological section of a stage 25-equivalent animal cap explant from an uninjected embryo stained for XAG-1. (C) Histological section of stage 25-equivalent animal cap explant from a lacz mrnainjected embryo stained for XAG-1. (D) Animal caps from X-bhh-injected embryos, cultured until siblings reached stage 25 and stained for XAG-1. (E) Histological section of one of the explants shown in D demonstrating foci of cement gland formation (white arrowheads). (F) Histological section of a X-bhh-injected animal cap showing the densely packed columnar morphology characteristic of cement gland secretory cells (bracket). bhh may be expressed in many of the same cells of the dermatome (data not shown). Overexpression of X-bhh induces enlargement or ectopic formation of cement gland and anterior pituitary gland in embryos We began investigating the activities of the X-hh family of genes by examining the effects of high level expression of one family member on embryonic development. Embryos at the 2- cell stage were injected at the animal pole in both blastomeres with synthetic X-bhh or control (lacz) RNA. In several independent experiments, 57% of X-bhh-injected embryos (n=68) showed enlarged cement glands (Fig. 4B,D, white arrows) as compared to control embryos (Fig. 4A,C, white arrows). In situ hybridization using the cement gland marker XAG-1 (Sive et al., 1989; Lamb et al., 1993) confirmed the enlargement of the cement gland and further showed that ectopic cement glands were present in 10% of the injected embryos (n=95), usually clustered near the primary cement gland (Fig. 4B, arrowheads). We also used the anterior pituitary marker XANF-2 (Mathers et al., 1995) to inquire whether structures arising from ectoderm, yet posterior to the cement gland, can be influenced by X-bhh RNA injection. The anterior pituitary gland is indeed enlarged (Fig. 4D, black arrow) in 34% of X-bhh-injected embryos (n=35) relative to control embryos (Fig. 4C, black arrow). The formation of foci for ectopic cement glands in response to injection of X-bhh RNA (Fig. 4B) suggested that not all cells expressing X-bhh participate in the formation of cement glands. To provide a marker to indicate which cells inherit injected mrnas, we injected 32 cell stage embryos with a mixture of lacz and X-bhh RNAs. After staining for β-galactosidase activity and for XAG-1 expression, we found that only a subset of the cells expressing β-galactosidase also express XAG-1 (Fig. 4E). Expression of all four X-hh genes can induce cement gland formation in animal caps These initial experiments, which sought to identify developmental events and embryonic structures that are sensitive to

8 2344 S. C. Ekker and others Table 1. Induction of the cement gland marker XAG-1 by X-hh in Xenopus animal caps Dose XAG-1% RNA injected induction (n) X-bhh 60 pg 32 (34) X-bhh 1.5 ng 75 (39) X-bhh 3 ng 79 (28) X-chh 3 ng 59 (32) X-hh4 3 ng 58 (19) X-shh 3 ng 75 (8) X-shh fs 3 ng 0 (10) X-shh fs 6 ng 0 (31) lacz 3 ng 0 (19) high levels of hh, revealed that X-bhh can induce the formation of ectopic cement glands in whole embryos. This observation raised the question of whether the other three members of the X-hh family have a similar activity and whether this activity is able to directly divert embryonic ectoderm from epidermal to cement gland fates. To address these questions embryos were injected with synthetic mrnas from each of the four X-hh genes, or with lacz and a frameshifted version of X-shh (X-shh fs ) as controls, they were then reared to the blastula stage and animal caps dissected and incubated until sibling embryos reached stage 25. Animal caps were assayed for the expression of the cement gland marker XAG-1 by whole-mount in situ hybridization, and other animal caps were embedded and sectioned for light microscopy. Multiple foci of XAG-1 expression are apparent in animal caps isolated from embryos injected with X-bhh mrna over a 50-fold concentration range (Fig. 5D,E, arrowheads), and in animal caps from embryos injected with X-chh, X-shh, and X- hh4 (see Table 1). Animal caps from uninjected (Fig. 5B) and lacz-injected embryos (Fig. 5C), in contrast, do not express XAG-1 and instead differentiate as atypical epidermis (see also Table 1). Histological analyses of X-bhh-injected animal caps revealed that surface cells differentiate into densely packed columnar cells (Fig. 5F, bracket), which are characteristic of the secretory cells that comprise the pigmented, mucussecreting cement gland (Lyerla and Pellizari, 1974; Picard, 1975). Moreover, these histological analyses revealed no mesodermal cell types (data not shown), nor do these explants show induction of early or late mesodermal markers by RT- PCR (Lai et al., 1995). These results demonstrate that X-hhs induce the differentation of cement gland in ectodermal tissue in the absence of mesoderm. X-bhh is induced by activin but can act independently of noggin and follistatin Since both noggin and follistatin (Lamb et al., 1993; Hemmati- Brivanlou et al., 1994) are able to induce cement gland and anterior neural markers in animal caps, we tested the possibility that X-hh activities can induce the expression of either of these factors, and also whether noggin and follistatin activities can directly increase the expression of X-bhh. In addition, since activin is capable of inducing the expression of noggin and follistatin (Thomsen and Melton, 1993; Hemmati-Brivanlou et al., 1994), we tested the ability of activin treatment to induce expression of X-bhh. Two-cell embryos were injected separately with X-bhh, noggin, or follistatin mrnas and animal caps were analyzed by RT-PCR for the expression of the other two genes. Fig. 6A demonstrates that, in contrast to activin (lane 1), X-bhh does not induce either noggin or follistatin (lane 2). Conversely, in explants cultured to the equivalent of stage 11 (data not shown) or stage 25 (Fig. 6B), it is apparent that neither noggin nor follistatin induce X-bhh to levels obtained by treatment with activin. These data are most consistent with the interpretation that X-bhh is neither directly upstream nor downstream of previously described anterior neural inducers Fig. 6. X-bhh is not induced by nor induces the expression of noggin or follistatin. (A) Activin-treated (lanes 1, 4), X-bhh-injected (lanes 2, 5), and uninjected (lanes 3, 6) animal caps were assayed by RT-PCR for the expression of noggin, EF-1α, and follistatin when sibling embryos had reached stage 11. To confirm the effectiveness of X-bhh mrna injection, remaining animal caps were assayed for expression of the cement gland marker, XAG-1 (lower panel) when sibling embryos reached stage 25. Note that activin but not X-bhh treatments induce noggin and follistatin. (B) Uninjected animal cap explants were cultured in the presence (lanes 2, 7) or absence (lanes 5, 10) of activin, and explants were also prepared from embryos injected with noggin (lanes 3, 8) and follistatin (lanes 4, 9) mrnas. Explants were cultured until siblings reached stage 25, and were then assayed for the expression of X-bhh (upper panel), EF-1α, or XAG-1 (lower panels). Note that X-bhh expression is induced by activin but not by noggin or follistatin.

9 hedgehog gene family of Xenopus 2345 in Xenopus and thus represents an independent pathway for induction of anterior ectodermal fates. DISCUSSION Expression of Xenopus hedgehog genes In the normal embryo, progressive induction and patterning of dorsal ectoderm to differentiate into cement gland and neural ectoderm begins during gastrulation (Kintner and Melton, 1987; Sive et al., 1989; Sharpe and Gurdon, 1990; reviewed by Saha and Grainger 1992, by Doniach 1993, and by Harland 1994). It is therefore noteworthy that expression of X-hh genes is detectable by whole-mount in situ hybridization within the early gastrula (Fig. 2A,E,I), although the general expression observed throughout sub-epithelial layers of the marginal zone is not immediately suggestive of dorsoanterior specification. By the neurula stage, X-hh genes are expressed in distinct patterns which correlate well with a role for X-hh genes in promoting dorsoanterior fates. X-bhh (Fig. 2B,C) and X-shh (Fig. 2F,G) are expressed along most of the anterior-posterior extent of the body axis by the late neurula stage but with the most prominent expression observed in anterior structures of the head and brain. This anterior bias is most pronounced for X-chh, whose expression is restricted exclusively to the anterior-most portion of the embryo from the neurula stage onward (Fig. 2J). Thus, all three of these genes fulfil the criteria of being expressed in cells that are candidates for providing endogenous signals which are involved in the early induction and patterning of anterodorsal ectodermal and neural structures. Since all four X-hh genes display essentially indistinguishable activities in direct induction assays (Table 1), the overall distribution of X-hh activity in the embryo is most reasonably considered as the summed expression of all genes. Given the anterior emphasis in expression of individual genes at the neurula stage, this overall sum is strongly biased toward anterior expression, supporting our proposal that X-hh activities function in the induction and patterning of anterior structures in the normal embryo. With subsequent development, X- bhh and X-shh are expressed in distinct patterns suggestive of additional roles in both the somites and the nervous system, respectively. Induction of cement gland by X-hh activities On the basis of histology and expression of a specific marker gene, cement gland induction from naive animal cap ectoderm occurs through the activity of products from all four X-hh genes. Upon titration through a 50-fold concentration range of injected X-bhh mrna, this inductive activity appears to occur in response to a critical threshold of X-hh activity. Above this threshhold, foci for cement glands increase in number and size; below this threshold the foci for cement glands decrease in frequency, with unaffected caps forming atypical epidermis that is histologically indistinguishable from that of uninjected controls. Since multiple foci for cement glands are detected, this suggests that only a subset of cells expressing X-hh participate in formation of cement glands. Consistent with this idea, injection of embryos with a mixture of lacz and X-bhh RNAs reveals that many cells expressing β-galactosidase do not express a cement gland marker, XAG-1. Further histological analyses and antibody staining for the muscle marker 12/101 and a neural-specific N-CAM marker detect no additional organized tissues that are induced by X-hh activities in either animal cap explants or in embryos (data not shown). Since cement gland formation can be induced by dorsal mesoderm (Cooke et al., 1987; Sive et al., 1989) it is notable that animal caps from X-bhh-injected embryos form cement glands without induction of the mesodermal markers Xwnt-8, goosecoid, or Xbra, as monitored by RT-PCR (Lai et al., 1995), consistent with the idea of direct induction of cement glands from ectoderm. It remains possible that X-hh activities exert influences on mesoderm not evident from the expression of these marker genes since, in amniotes, sonic hedgehog expression appears to impose pattern upon the mesoderm of limbs and somites (Riddle et al., 1993; Chang et al., 1994; Niswander et al., 1994; Laufer et al., 1994; Fan and Tessier- Levigne, 1994; Johnson et al., 1994). Cement gland induction by X-bhh is independent of induction of noggin and follistatin noggin (Lamb et al., 1993) and follistatin (Hemmati-Brivanlou et al., 1994) have been shown previously to be expressed in cell types and to display activities consistent with potential roles in neural induction. Like X-bhh, both noggin and follistatin can divert animal cap ectoderm to differentiate as cement gland, an extreme anterior cell fate. However, there are significant differences in the activities of these factors, since X- bhh has a very limited ability to directly induce neural genes (Lai et al., 1995), whereas both noggin and follistatin directly induce general neural markers such as N-CAM, and at least in the case of follistatin, markers such as En-2 that are indicative of more posterior neural fates. Thus, the direct inducing activity of X-bhh is primarily the cement gland, which is a subset of the reported activities of noggin and follistatin. Given this overlap in the ability of X-bhh, noggin, and follistatin to induce the cement gland, it seemed plausible that either noggin or follistatin might be able to induce the expression of X-bhh in animal cap explants or, alternatively, that X-bhh activities involve the activation of noggin or follistatin. We therefore undertook experiments with animal cap explants prepared from embryos previously injected with synthetic X-bhh mrna and demonstrated that neither follistatin nor noggin expression were induced, indicating that the direct cement gland inducing activity of X-bhh in naive ectoderm can act independently of noggin and follistatin. In like manner, animal caps from embryos injected with synthetic follistatin or noggin mrna failed to show induction of X-bhh. We cannot rule out the possibility that an unidentified X-hh is induced by either factor, but since X-bhh, noggin and follistatin are all induced in animal caps by activin, the simplest interpretation is that X-bhh is neither directly upstream nor downstream of previously described neural inducers in Xenopus and thus represents an independent pathway for induction of the cement gland. The distinct patterns of expression of X-bhh, X-chh, and X- shh and their common activity in induction of the cement gland in animal cap explants have implications for the mechanisms of action and normal functions of these genes. First, as reviewed above, during neurulation these genes are enriched in overlapping patterns in anterior structures of the embryo and X-bhh is expressed in cells adjacent to the cement gland (Fig. 3B). Given these patterns of expression and their common

10 2346 S. C. Ekker and others ability to directly induce cement glands, Xhhs meet the criteria of being expressed in spatial patterns and with demonstrable activities consistent with roles in specifying differentiation of the cement gland and other extreme anterior ectodermal fates. Xhh-expressing cells of axial structures and of the somites are not likely to be involved in the induction of cement gland. In these structures Xhhs may affect patterning through modulation of a common signalling pathway; activation of this pathway in naive ectoderm leads to induction of the cement gland, whereas activation of this pathway in other cell types may have other effects. The ability of distinct members of the Xhh family to induce the cement gland may provide a useful system for further dissecting cellular responses to hh signals. We wish to thank the members of our labs for helpful discussions, Janine Ptak and Carol Gavenport for oligonucleotide synthesis and DNA sequencing, Kathy Wilson for the cdna library, John Kuo and Hazel Sive for the XAG-1 primer sequences and cdna, P. Mathers and M. Jamrich for providing the XANF-2 clone and sequence prior to publication, Richard Harland for noggin cdna constructs, Andy Johnson and Paul Krieg for the expression vector pt7ts, Genentech for the recombinant human activin A, and Chris Kintner for the 12/101 antibody. P. A. B. and R. T. M. are investigators of the Howard Hughes Medical Institute. C.-J. L. was supported by Public Health Service Award HD27525 to R. T. M. REFERENCES Basler, K. and Struhl, G. (1994). Compartment boundaries and the control of Drosophila limb pattern by the hedgehog protein. Nature 368, Bradley, L., Snape, A., Bhatt, S. and Wilkinson, D. (1993). The structure and expression of the Xenopus Krox-20 gene: conserved and divergent patterns of expression in rhomobomeres and neural crest. Mech. Dev. 40, Chang, D. T., Lopez, A., von Kessler, D. P., Chiang, C., Simandl, B. K., Zhao, R., Seldin, M. F., Fallon, J. F. and Beachy, P. A. (1994). Products, genetic linkage, and limb patterning activity of a murine hedgehog gene. Development 120, Cooke, J., Smith, J. C., Smith, E. J. and Yaqoob, M. (1987). The organization of mesodermal pattern in Xenopus laevis: experiments using a Xenopus mesoderm-inducing factor. Development 101, Doniach, T. (1993). Planar and vertical induction of anteroposterior pattern during the development of the amphibian central nervous system. J. Neurobiol. 24, Echelard, Y., Epstein, D. J., St-Jacques, B., Shen, L., Mohler, J., McMahon, J. A. and McMahon, A. P. (1993). Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell 75, Fan, C.-M. and Tessier-Lavigne, M. (1994). Patterning of mammalian somites by surface ectoderm and notochord: evidence for sclerotome induction by a hedgehog homolog. Cell 79, Harland, R. M. (1991). In situ hybridization: an improved whole-mount method for Xenopus embryos. Methods Cell Biol. 36, Harland, R. M. (1994). Neural induction in Xenopus. Current Opin. Genet. Dev.t 4, Hausen, P. and Riebesel, M. (1991). The Early Development of Xenopus laevis. Springer-Verlag. Heberlein, U., Wolff, T. and Rubin, G. M. (1993). The TGFβ homolog dpp and the segment polarity gene hedgehog are required for propagation of a morphogenetic wave in the Drosophila retina. Cell 75, Heemskerk, J. and DiNardo, S. (1994). Drosophila hedgehog acts as a morphogen in cellular patterning. Cell 76, Hemmati-Brivanlou, A., Kelly, O. G. and Melton, D. A. (1994). Follistatin, an antagonist of activin, is expressed in the Spemann organizer and displays direct neuralizing activity. Cell 77, Hooper, J. E. and Scott, M. P. (1992). The molecular genetic basis of positional information in insect segments In Early Embryonic Development of Animals (ed. W. Hennig), pp Berlin: Springer-Verlag. Johnson, R.L., Laufer, E., Riddle, R.D. and Tabin, C. (1994). Ectopic expression of sonic hedgehog alters dorsal-ventral patterning of somites. Cell 79, Kelly, G. M., Eib, D. W. and Moon, R. T. (1991). Histological preparation of Xenopus laevis oocytes and embryos. Methods Cell Biol. 36, Kintner, C. R. and Brockes, J. P. (1984). Monoclonal antibodies identify blastemal cells derived from dedifferentiating muscle in newt limb regeneration. Nature 308, Kintner, C. R. and Melton, D. A. (1987). Expression of Xenopus N-CAM RNA in ectoderm is an early response to neural induction. Development 99, Klymkowsky, M. W. and Hanken, J. (1991). Whole mount staining of Xenopus and other vertebrates. Methods Cell Biol. 36, Krauss, S., Concordet, J.-P. and Ingham, P. W. (1993). A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos. Cell 75, Ku, M. and Melton, D. A. (1993). Xwnt-11, a novel maternally expressed Xenopus Wnt gene. Development 119, Lai, C.-J., Ekker, S. C., Beachy, P. A. and Moon, R. T. (1995). Patterning of the neural ectoderm of Xenopus laevis by the amino-terminal product of hedgehog autoproteolytic cleavage. Development 120, Lamb, T. M., Knecht, A. K., Smith, W. C., Stachel, S. E., Economides, A. N., Stahl, N., Yancopolous, G. D. and Harland, R. M. (1993). Neural induction by the secreted polypeptide Noggin. Science 262, Laufer, E., Nelson, C., Johnson, R. L., Morgan, B. A. and Tabin, C. (1994) Sonic hedgehog and Fgf-4 act through a signaling cascade and feedback loop to integrate growth and patterning of the developing limb bud. Cell 79, Lyerla, T. A. and Pellizari, J. J. (1974). Histological development of the cement gland in Xenopus laevis: a light microscopic study. J. Morphol. 141, Ma, C., Zhou, Y., Beachy, P. A. and Moses, K. (1993). The segment polarity gene hedgehog is required for progression of the morphogenetic furrow in the developing Drosophila eye. Cell 75, Mathers, P. H., Miller, A., Doniach, T., Dirksen, M. L. and Jamrich, M. (1995). Initiation of anterior head-specific gene expression in uncommitted ectoderm of Xenopus laevis by ammonium chloride. Dev. Biol. (in press). McGrew, L. L., Otte, A. P. and Moon, R. T. (1992). Analysis of Xwnt-4 in embryos of Xenopus laevis: a Wnt family member expressed in the brain and floor plate. Development 115, Mohler, J. (1988). Requirements for hedgehog, a segmental polarity gene, in patterning larval and adult cuticle of Drosophila. Genetics 120, Moon, R. T. and Christian, J. L. (1989). Microinjection and expression of synthetic mrnas in Xenopus embryos. Technique 1, Niehrs, C., Steinbeisser, H. and De Robertis, E. M. (1994). Mesoderm patterning by a gradient of the vertebrate homeobox gene goosecoid. Science 263, Nieuwkoop, P. D. and Faber, J. (1967). Normal Table of Xenopus laevis (Daudin). Amsterdam: Elsevier North-Holland Biomedical Press. Niswander, L., Jeffrey, S., Martin, G. R. and Tickle, C. (1994). A positive feedback loop coordinates growth and patterning in the vertebrate limb. Nature 371, Nüsslein-Volhard, C. and Wieschaus, E. (1980). Mutations affecting segment number and polarity in Drosophila. Nature 287, Otte, A. P. McGrew, L. L., Nathanson, N. M., Olate, J. and Moon, R. T. (1992). Expression and potential functions of G-protein a subunits in early Xenopus embryos. Development 116, Picard, J. J. (1975). Ultrastructure of the cement gland of Xenopus laevis. J. Morph. 148, Richter, K., Grunz, H. and Dawid, I. (1988). Gene expression in the embryonic nervous system of Xenopus laevis. Proc. Natl. Acad. Sci. USA 85, Riddle, R. D., Johnson, R. L., Laufer, E. and Tabin, C. (1993). Sonic hedgehog mediates the polarizing activity of the ZPA. Cell 75, Roelink, H., Augsburger, A., Heemskerk, J., Korzh, V., Norlin, S., Ruiz i Altaba, A., Tanabe, Y., Placzek, M., Edlund, T., Jessell, T. M. and Dodd, J. (1994). Floor plate and motor neuron induction by vhh-1, a vertebrate homolog of hedgehog expressed by the notochord. Cell 76, Saha, M. S. and Grainger, R. M. (1992). A labile period in the determination of the anterior-posterior axis during early neural development in Xenopus. Neuron 8, Sharp, C. R. and Gurdon, J. B. (1990). The induction of anterior and posterior neural genes in Xenopus laevis. Development 109,

11 hedgehog gene family of Xenopus 2347 Sive, H. L., Hattori, K. and Weintraub, H. (1989). Progressive determination during formation of the anteroposterior axis in Xenopus laevis. Cell 58, Tabata, T. and Kornberg, T. B. (1994). Hedgehog is a signaling protein with a key role in patterning Drosophila imaginal discs. Cell 76, Thomsen, G. H. and Melton, D. A. (1993). Processed Vg1 protein is an axial mesoderm inducer in Xenopus. Cell 74, von Heijne, G. (1986). A new method for predicting signal sequence cleavage sites. Nucl. Acids Res. 14, Westerfield, M., Wegner, J., Jegalian, B. G., DeRobertis, E. M. and Puschel, A. W. (1992). Specific activation of mammalian Hox promoters in mosaic transgenic zebrafish. Genes Dev. 6, (Accepted 5 May 1995)

Patterning of the neural ectoderm of Xenopus laevis by the amino-terminal product of hedgehog autoproteolytic cleavage

Patterning of the neural ectoderm of Xenopus laevis by the amino-terminal product of hedgehog autoproteolytic cleavage Development 121, 2349-2360 (1995) Printed in Great Britain The Company of Biologists Limited 1995 2349 Patterning of the neural ectoderm of Xenopus laevis by the amino-terminal product of hedgehog autoproteolytic

More information

RNAs were transcribed from described expression conhibit a similar capacity to synergize with neural-inducing

RNAs were transcribed from described expression conhibit a similar capacity to synergize with neural-inducing DEVELOPMENTAL BIOLOGY 172, 337 342 (1995) RAPID COMMUNICATION Specification of the Anteroposterior Neural Axis through Synergistic Interaction of the Wnt Signaling Cascade with noggin and follistatin L.

More information

Readings. Lecture IV. Mechanisms of Neural. Neural Development. September 10, Bio 3411 Lecture IV. Mechanisms of Neural Development

Readings. Lecture IV. Mechanisms of Neural. Neural Development. September 10, Bio 3411 Lecture IV. Mechanisms of Neural Development Readings Lecture IV. Mechanisms of Neural NEUROSCIENCE: References : 5 th ed, pp 477-506 (sorta) 4 th ed, pp 545-575 (sorta) Fainsod, A., Steinbeisser, H., & De Robertis, E. M. (1994). EMBO J, 13(21),

More information

Mesoderm Formation. Fate map of early gastrula. Only two types of mesoderm are induced. Mesoderm induction by the vegetal hemisphere

Mesoderm Formation. Fate map of early gastrula. Only two types of mesoderm are induced. Mesoderm induction by the vegetal hemisphere Fate map of early gastrula Mesoderm Formation Animal hemisphere forms ectoderm (lacks ) Sperm Entry Point dbl dbl brachyury Vegetal hemisphere forms endoderm (requires ) dbl goosecoid Marginal zone forms

More information

Xenopus gastrulation. Dorsal-Ventral Patterning - The Spemann Organizer. Two mesoderm inducing signals

Xenopus gastrulation. Dorsal-Ventral Patterning - The Spemann Organizer. Two mesoderm inducing signals Dorsal- atterning - The Spemann Organizer Two mesoderm inducing signals late-blastula early-gastrula nimal Blood Mesothelium Not Vegetal NC Endoderm Hans Spemann (1869-1941) Hilde Mangold (1898-1924) Dr

More information

Lecture 3 MOLECULAR REGULATION OF DEVELOPMENT

Lecture 3 MOLECULAR REGULATION OF DEVELOPMENT Lecture 3 E. M. De Robertis, M.D., Ph.D. August 16, 2016 MOLECULAR REGULATION OF DEVELOPMENT GROWTH FACTOR SIGNALING, HOX GENES, AND THE BODY PLAN Two questions: 1) How is dorsal-ventral (D-V) cell differentiation

More information

Patterning of the Brain

Patterning of the Brain Patterning of the Brain Clemens.Kiecker@kcl.ac.uk IoPPN 27 Oct 2015 Hundreds of billions of cells, hundreds of cell types Egg = single cell, some 20,000 genes Egg = single cell, some 20,000 genes How is

More information

7.22 Final Exam points

7.22 Final Exam points Massachusetts Institute of Technology Department of Biology 7.22, Fall 2005 - Developmental Biology Instructors: Professor Hazel Sive, Professor Martha Constantine-Paton 1 of 11 7.22 2004 FINAL FOR STUDY

More information

Fertilization. Animal hemisphere. Sperm entry point

Fertilization. Animal hemisphere. Sperm entry point Fertilization Animal hemisphere Sperm entry point Establishes the dorsal/ventral axis Ventral side sperm entry Dorsal side gray crescent Organized by sperm centriole Cleavage Unequal radial holoblastic

More information

+ + Development and Evolution Dorsoventral axis. Developmental Readout. Foundations. Stem cells. Organ formation.

+ + Development and Evolution Dorsoventral axis. Developmental Readout. Foundations. Stem cells. Organ formation. Development and Evolution 7.72 9.11.06 Dorsoventral axis Human issues Organ formation Stem cells Developmental Readout Axes Growth control Axon guidance 3D structure Analysis Model + + organisms Foundations

More information

We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo.

We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo. We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo. Hans Spemann, 1943 Reading from Chapter 3 - types of cell

More information

Neural Induction. Chapter One

Neural Induction. Chapter One Neural Induction Chapter One Fertilization Development of the Nervous System Cleavage (Blastula, Gastrula) Neuronal Induction- Neuroblast Formation Cell Migration Mesodermal Induction Lateral Inhibition

More information

Early Development and Axis Formation in Amphibians

Early Development and Axis Formation in Amphibians Biology 4361 Early Development and Axis Formation in Amphibians October 25, 2006 Overview Cortical rotation Cleavage Gastrulation Determination the Organizer mesoderm induction Setting up the axes: dorsal/ventral

More information

We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo.

We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo. We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo. Hans Spemann, 1943 Reading from Chapter 3 - types of cell

More information

Neural Development. How does a single cell make a brain??? How are different brain regions specified??? Neural Development

Neural Development. How does a single cell make a brain??? How are different brain regions specified??? Neural Development Neural Development How does a single cell make a brain??? How are different brain regions specified??? 1 Neural Development How do cells become neurons? Environmental factors Positional cues Genetic factors

More information

Xenopus axis formation: induction of goosecoid by injected Xwnt-8 and activin mrnas

Xenopus axis formation: induction of goosecoid by injected Xwnt-8 and activin mrnas Development 118, 499-507 (1993) Printed in Great Britain The Company of Biologists Limited 1993 499 Xenopus axis formation: induction of goosecoid by injected Xwnt-8 and activin mrnas Herbert Steinbeisser

More information

Neural crest induction in Xenopus: evidence for a two-signal model

Neural crest induction in Xenopus: evidence for a two-signal model Development 125, 2403-2414 (1998) Printed in Great Britain The Company of Biologists Limited 1998 DEV4980 2403 Neural crest induction in Xenopus: evidence for a two-signal model Carole LaBonne* and Marianne

More information

Supplement Figure S1:

Supplement Figure S1: Supplement Figure S1: A, Sequence of Xcadherin-11 Morpholino 1 (Xcad-11MO) and 2 (Xcad-11 MO2) and control morpholino in comparison to the Xcadherin-11 sequence. The Xcad-11MO binding sequence spans the

More information

Later Development. Caenorhabditis elegans. Later Processes 10/06/12. Cytoplasmic Determinants Fate Mapping & Cell Fate Limb Development

Later Development. Caenorhabditis elegans. Later Processes 10/06/12. Cytoplasmic Determinants Fate Mapping & Cell Fate Limb Development Later Development Cytoplasmic Determinants Fate Mapping & Cell Fate Limb Development Caenorhabditis elegans Nematoda 10,000 worms/petri dish in cultivation short life cycle (~ 3 days egg to egg) wild-type

More information

Reading. Lecture III. Nervous System Embryology. Biology. Brain Diseases. September 5, Bio 3411 Lecture III. Nervous System Embryology

Reading. Lecture III. Nervous System Embryology. Biology. Brain Diseases. September 5, Bio 3411 Lecture III. Nervous System Embryology Reading NEUROSCIENCE: 5 th ed, pp. 477-506 NEUROSCIENCE: 4 th ed, pp. 545-575 Bio 3411 Wednesday 2 Summary from Lecture II Biology Understanding the brain is THE major question in biology and science.

More information

Regulation of Hox gene expression and posterior development by the Xenopus caudal homologue Xcad3

Regulation of Hox gene expression and posterior development by the Xenopus caudal homologue Xcad3 The EMBO Journal Vol.17 No.12 pp.3413 3427, 1998 Regulation of Hox gene expression and posterior development by the Xenopus caudal homologue Xcad3 Harry V.Isaacs 1, Mary Elizabeth Pownall and Jonathan

More information

Lecture III. Nervous System Embryology

Lecture III. Nervous System Embryology Bio 3411 Wednesday Reading NEUROSCIENCE: 5 th ed, pp. 477-506 NEUROSCIENCE: 4 th ed, pp. 545-575 2 1 Summary from Lecture II Biology Understanding the brain is THE major question in biology and science.

More information

Lecture 20: Drosophila melanogaster

Lecture 20: Drosophila melanogaster Lecture 20: Drosophila melanogaster Model organisms Polytene chromosome Life cycle P elements and transformation Embryogenesis Read textbook: 732-744; Fig. 20.4; 20.10; 20.15-26 www.mhhe.com/hartwell3

More information

Xenopus GDF6, a new antagonist of noggin and a partner of BMPs

Xenopus GDF6, a new antagonist of noggin and a partner of BMPs Development 126, 3347-3357 (1999) Printed in Great Britain The Company of Biologists Limited 1999 DEV3918 3347 Xenopus GDF6, a new antagonist of noggin and a partner of BMPs Chenbei Chang and Ali Hemmati-Brivanlou*

More information

Supporting Information

Supporting Information Supporting Information Lu et al. 10.1073/pnas.1106801108 Fig. S1. Analysis of spatial localization of mrnas coding for 23 zebrafish Wnt genes by whole mount in situ hybridization to identify those present

More information

Muscle gene activation by induction and the nonrequirement for cell division

Muscle gene activation by induction and the nonrequirement for cell division /. Embryol. exp. Morph. 97 Supplement, 75-84 (1986) 75 Printed in Great Britain The Company of Biologists Limited 1986 Muscle gene activation by induction and the nonrequirement for cell division J. B.

More information

Expression Pattern of Xtshz1 and Xtshz3 During Xenopus Early Eye Formation

Expression Pattern of Xtshz1 and Xtshz3 During Xenopus Early Eye Formation SUNY College of Environmental Science and Forestry Digital Commons @ ESF Honors Theses 5-2012 Expression Pattern of Xtshz1 and Xtshz3 During Xenopus Early Eye Formation Katherine L. McKissick Follow this

More information

A Survey of Genetic Methods

A Survey of Genetic Methods IBS 8102 Cell, Molecular, and Developmental Biology A Survey of Genetic Methods January 24, 2008 DNA RNA Hybridization ** * radioactive probe reverse transcriptase polymerase chain reaction RT PCR DNA

More information

Lecture 20: Drosophila embryogenesis

Lecture 20: Drosophila embryogenesis Lecture 20: Drosophila embryogenesis Mitotic recombination/clonal analyses Embrygenesis Four classes of genes: Maternal genes Gap genes Pair-rule genes Segment polarity genes Homeotic genes Read 140-141;

More information

Activity 47.1 What common events occur in the early development of animals? 1. What key events occur at each stage of development?

Activity 47.1 What common events occur in the early development of animals? 1. What key events occur at each stage of development? Notes to Instructors Chapter 47 Animal Development What is the focus of this activity? Chapter 21 provided a review of how genes act to control development. Chapter 47 reviews some of the major morphological

More information

Biology 4361 Developmental Biology Lecture 4. The Genetic Core of Development

Biology 4361 Developmental Biology Lecture 4. The Genetic Core of Development Biology 4361 Developmental Biology Lecture 4. The Genetic Core of Development The only way to get from genotype to phenotype is through developmental processes. - Remember the analogy that the zygote contains

More information

Induction of the primary dorsalizing center in Xenopus by the Wnt/GSK/βcatenin signaling pathway, but not by Vg1, Activin or Noggin

Induction of the primary dorsalizing center in Xenopus by the Wnt/GSK/βcatenin signaling pathway, but not by Vg1, Activin or Noggin Development 124, 453-46 (1997) Printed in Great Britain The Company of Biologists Limited 1997 DEV9489 453 Induction of the primary dorsalizing center in Xenopus by the Wnt/GSK/βcatenin signaling pathway,

More information

CAP BIOINFORMATICS Su-Shing Chen CISE. 10/5/2005 Su-Shing Chen, CISE 1

CAP BIOINFORMATICS Su-Shing Chen CISE. 10/5/2005 Su-Shing Chen, CISE 1 CAP 5510-9 BIOINFORMATICS Su-Shing Chen CISE 10/5/2005 Su-Shing Chen, CISE 1 Basic BioTech Processes Hybridization PCR Southern blotting (spot or stain) 10/5/2005 Su-Shing Chen, CISE 2 10/5/2005 Su-Shing

More information

Neural Induction. Steven McLoon Department of Neuroscience University of Minnesota

Neural Induction. Steven McLoon Department of Neuroscience University of Minnesota Neural Induction Steven McLoon Department of Neuroscience University of Minnesota 1 Course News Coffee Hour (with Dr. Nakagawa) Friday, Sept 22 8:30-9:30am Surdyks Café in Northrop Auditorium Stop by for

More information

The homeobox gene Siamois is a target of the Wnt dorsalisation pathway and triggers organiser activity in the absence of mesoderm

The homeobox gene Siamois is a target of the Wnt dorsalisation pathway and triggers organiser activity in the absence of mesoderm Development 122, 3055-3065 (1996) Printed in Great Britain The Company of Biologists Limited 1996 DEV1088 3055 The homeobox gene Siamois is a target of the Wnt dorsalisation pathway and triggers organiser

More information

7.22 Example Problems for Exam 1 The exam will be of this format. It will consist of 2-3 sets scenarios.

7.22 Example Problems for Exam 1 The exam will be of this format. It will consist of 2-3 sets scenarios. Massachusetts Institute of Technology Department of Biology 7.22, Fall 2005 - Developmental Biology Instructors: Professor Hazel Sive, Professor Martha Constantine-Paton 1 of 10 7.22 Fall 2005 sample exam

More information

MOLECULAR BIOLOGY OF SPEMANN S ORGANIZER AND NEURAL INDUCTION - Lecture 5

MOLECULAR BIOLOGY OF SPEMANN S ORGANIZER AND NEURAL INDUCTION - Lecture 5 Eddy De Robertis Page 1 MOLECULAR BIOLOGY OF SPEMANN S ORGANIZER AND NEURAL INDUCTION - Lecture 5 Having discussed the early events in mesoderm induction, we now turn to signaling events that take place

More information

goosecoid and the organizer

goosecoid and the organizer Development 1992 Supplement, 167-171 (1992) Printed in Great Britain The Company of Biologists Limited 1992 167 goosecoid and the organizer EDDY M. DE ROBERTIS, MARTIN BLUM, CHRISTOF NIEHRS and HERBERT

More information

ANAT2341 Embryology Introduction: Steve Palmer

ANAT2341 Embryology Introduction: Steve Palmer ANAT2341 Embryology Introduction: Steve Palmer Course overview Course lecturers specializations and roles Steve Palmer 9385 2957 Course overview Summary, aims and expected outcomes Course overview Graduate

More information

Cytochalasin B inhibits morphogenetic movement and muscle differentiation of activin-treated ectoderm in Xenopus

Cytochalasin B inhibits morphogenetic movement and muscle differentiation of activin-treated ectoderm in Xenopus Develop. Growth Differ. (1999) 41, 41 49 Cytochalasin B inhibits morphogenetic movement and muscle differentiation of activin-treated ectoderm in Xenopus Keiko Tamai, 1 Chika Yokota, 2 Takashi Ariizumi

More information

efgf, Xcad3 and Hox genes form a molecular pathway that establishes the

efgf, Xcad3 and Hox genes form a molecular pathway that establishes the Development 122, 3881-3892 (1996) Printed in Great Britain The Company of Biologists Limited 1996 DEV3573 3881 efgf, Xcad3 and Hox genes form a molecular pathway that establishes the anteroposterior axis

More information

Concentration-dependent patterning of the Xenopus ectoderm by BMP4 and its signal transducer Smad1

Concentration-dependent patterning of the Xenopus ectoderm by BMP4 and its signal transducer Smad1 Development 124, 3177-3184 (1997) Printed in Great Britain The Company of Biologists Limited 1997 DEV1180 3177 Concentration-dependent patterning of the Xenopus ectoderm by BMP4 and its signal transducer

More information

Fatchiyah

Fatchiyah Fatchiyah Email: fatchiya@yahoo.co.id RNAs: mrna trna rrna RNAi DNAs: Protein: genome DNA cdna mikro-makro mono-poly single-multi Analysis: Identification human and animal disease Finger printing Sexing

More information

Neural induction. Noggin Chordin Follistatin (Xnr3)

Neural induction. Noggin Chordin Follistatin (Xnr3) a bird s eye view Since the discovery of the phenomenon of neural induction by Spemann and Mangold in 94, considerable effort has been invested in identifying the signals produced by the organizer that

More information

Chapter 14 Regulation of Transcription

Chapter 14 Regulation of Transcription Chapter 14 Regulation of Transcription Cis-acting sequences Distance-independent cis-acting elements Dissecting regulatory elements Transcription factors Overview transcriptional regulation Transcription

More information

Chapter 6 - Molecular Genetic Techniques

Chapter 6 - Molecular Genetic Techniques Chapter 6 - Molecular Genetic Techniques Two objects of molecular & genetic technologies For analysis For generation Molecular genetic technologies! For analysis DNA gel electrophoresis Southern blotting

More information

A two-step mechanism generates the spacing pattern of the ciliated cells in the skin of Xenopus embryos

A two-step mechanism generates the spacing pattern of the ciliated cells in the skin of Xenopus embryos Development 126, 4715-4728 (1999) Printed in Great Britain The Company of Biologists Limited 1999 DEV4207 4715 A two-step mechanism generates the spacing pattern of the ciliated cells in the skin of Xenopus

More information

CHAPTER 21 GENOMES AND THEIR EVOLUTION

CHAPTER 21 GENOMES AND THEIR EVOLUTION GENETICS DATE CHAPTER 21 GENOMES AND THEIR EVOLUTION COURSE 213 AP BIOLOGY 1 Comparisons of genomes provide information about the evolutionary history of genes and taxonomic groups Genomics - study of

More information

The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo-mesoderm promoting pathways

The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo-mesoderm promoting pathways Developmental Biology 305 (2007) 103 119 www.elsevier.com/locate/ydbio The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo-mesoderm promoting pathways Bo

More information

W Nr genes encode a family of secreted glycoproteins

W Nr genes encode a family of secreted glycoproteins Activities of the Wnt-1 Class of Secreted Signaling Factors Are Antagonized by the Wnt-5A Class and by a Dominant Negative Cadherin in Early Xenopus Development Monica A. Tortes, Julia A. Yang-Snyder,

More information

Activin-Induced Factors Maintain goosecoid Transcription through a Paired Homeodomain Binding Site

Activin-Induced Factors Maintain goosecoid Transcription through a Paired Homeodomain Binding Site DEVELOPMENTAL BIOLOGY 204, 172 186 (1998) ARTICLE NO. DB989065 Activin-Induced Factors Maintain goosecoid Transcription through a Paired Homeodomain Binding Site Roslyn McKendry, Richard M. Harland, 1

More information

What s the most complex problem in biology?

What s the most complex problem in biology? Chapter 47. Development What s the most complex problem in biology? 1 The most complex problem How to get from here to there Development: cellular level Cell division Differentiation cells become specialized

More information

Chapter 47. Development

Chapter 47. Development Chapter 47. Development What s the most complex problem in biology? The most complex problem How to get from here to there Development: cellular level Cell division Differentiation cells become specialized

More information

Activin-mediated mesoderm induction requires FGF

Activin-mediated mesoderm induction requires FGF Development 120, 453-462 (1994) Printed in Great Britain The Company of Biologists Limited 1994 453 Activin-mediated mesoderm induction requires FGF Robert A. Cornell and David Kimelman* Department of

More information

HD1 - Introduction to Human Development

HD1 - Introduction to Human Development Human Development Ed Laufer, PhD Course Director elaufer@columbia.edu Ping Feng Course Administrator pf2013@columbia.edu Michael Shen, PhD Patricia Ducy, PhD Michael Gershon, MD Cathy Mendelsohn, PhD Richard

More information

Chapter 20 Recombinant DNA Technology. Copyright 2009 Pearson Education, Inc.

Chapter 20 Recombinant DNA Technology. Copyright 2009 Pearson Education, Inc. Chapter 20 Recombinant DNA Technology Copyright 2009 Pearson Education, Inc. 20.1 Recombinant DNA Technology Began with Two Key Tools: Restriction Enzymes and DNA Cloning Vectors Recombinant DNA refers

More information

Deep Sequencing of Notochord-Derived Cells During Embryonic Formation of the Nucleus Pulposus: Preliminary Findings

Deep Sequencing of Notochord-Derived Cells During Embryonic Formation of the Nucleus Pulposus: Preliminary Findings Deep Sequencing of Notochord-Derived Cells During Embryonic Formation of the Nucleus Pulposus: Preliminary Findings Lachlan J. Smith, Ph.D. 1, Joseph A. Chiaro, B.S. 1, Kendra K. McKee, B.S. 2, Neil R.

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/318/5851/794/dc1 Supporting Online Material for A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression Joel Smith, Christina Theodoris, Eric

More information

BMP-2 and BMP-4 signalling in the developing spinal cord of human and rat embryos

BMP-2 and BMP-4 signalling in the developing spinal cord of human and rat embryos O R I G I N A L A R T I C L E Folia Morphol. Vol. 74, No. 3, pp. 359 364 DOI: 10.5603/FM.2015.0054 Copyright 2015 Via Medica ISSN 0015 5659 www.fm.viamedica.pl BMP-2 and BMP-4 signalling in the developing

More information

Why Study Developmental Neurobiology? Terrific scientific challenge.

Why Study Developmental Neurobiology? Terrific scientific challenge. Developmental Neurobiology Textbook Readings: ( Neuroscience, 3rd Edition, Purves, et al.) Chapter 1 Studying Nervous Systems 7 Intracellular Signal Transduction 21 Early Brain Development 22 Construction

More information

Chapter 3. Two Hoxc6 transcripts are differentially expressed and regulate. primary neurogenesis in Xenopus laevis

Chapter 3. Two Hoxc6 transcripts are differentially expressed and regulate. primary neurogenesis in Xenopus laevis Chapter 3 Two Hoxc6 transcripts are differentially expressed and regulate primary neurogenesis in Xenopus laevis Nabila Bardine 1, Cornelia Donow 1, Brigitte Korte 1, Antony J. Durston 2, Walter Knöchel

More information

Exam 1 ID#: October 1, 2006

Exam 1 ID#: October 1, 2006 Biology 4361 Name: Exam 1 ID#: October 1, 2006 Multiple choice (one point each) 1. The formation of new structures in chick embryogenesis is an example of a. teratology. b. epigenesis. c. hybridization.

More information

Expression Cloning of Siamois, a Xenopus Homeobox Gene Expressed in Dorsal-Vegetal Cells of Blastulae and Able to Induce a Complete Secondary Axis

Expression Cloning of Siamois, a Xenopus Homeobox Gene Expressed in Dorsal-Vegetal Cells of Blastulae and Able to Induce a Complete Secondary Axis Cell, Vol. 81, 85-94, April 7, 1995, Copyright 1995 by Cell Press Expression Cloning of Siamois, a Xenopus Homeobox Gene Expressed in Dorsal-Vegetal Cells of Blastulae and Able to Induce a Complete Secondary

More information

Kathryn Zimmerman 1,2, John Shih 3, Julie Bars 4, Andres Collazo 3 and David J. Anderson 1,2, * SUMMARY

Kathryn Zimmerman 1,2, John Shih 3, Julie Bars 4, Andres Collazo 3 and David J. Anderson 1,2, * SUMMARY Development 119, 221-232 (1993) Printed in Great Britain The Company of Biologists Limited 1993 221 XASH-3, a novel Xenopus achaete-scute homolog, provides an early marker of planar neural induction and

More information

Developmental Zoology (ZOO ) Gatrulation

Developmental Zoology (ZOO ) Gatrulation Developmental Zoology (ZOO 228.1.0) Gatrulation 1 Developmental Stages Ø Early Development Fertilization Cleavage Gastrulation Neurulation Ø Later Development Organogenesis Larval molts Metamorphosis Aging

More information

Cloning and characterization of the Xenopus laevis p8 gene

Cloning and characterization of the Xenopus laevis p8 gene Develop. Growth Differ. (2001) 43, 693 698 Cloning and characterization of the Xenopus laevis p8 gene Toshime Igarashi, 1 Hiroki Kuroda, 1 Shuji Takahashi 2 and Makoto Asashima 1,2 * 1 Department of Life

More information

Supporting Information

Supporting Information Supporting Information Ho et al. 10.1073/pnas.0808899106 SI Materials and Methods In immunostaining, antibodies from Developmental Studies Hybridoma ank were -FasII (mouse, 1:200), - (mouse, 1:100), and

More information

Regulation of Acetylcholine Receptor Clustering by ADF/Cofilin- Directed Vesicular Trafficking

Regulation of Acetylcholine Receptor Clustering by ADF/Cofilin- Directed Vesicular Trafficking Regulation of Acetylcholine Receptor Clustering by ADF/Cofilin- Directed Vesicular Trafficking Chi Wai Lee, Jianzhong Han, James R. Bamburg, Liang Han, Rachel Lynn, and James Q. Zheng Supplementary Figures

More information

Induction and patterning of the telencephalon in Xenopus laevis

Induction and patterning of the telencephalon in Xenopus laevis Development 129, 5421-5436 (2002) 2002 The Company of Biologists Ltd doi:10.1242/dev.00095 5421 Induction and patterning of the telencephalon in Xenopus laevis Giuseppe Lupo 1,2, William A. Harris 2, Giuseppina

More information

Enzyme that uses RNA as a template to synthesize a complementary DNA

Enzyme that uses RNA as a template to synthesize a complementary DNA Biology 105: Introduction to Genetics PRACTICE FINAL EXAM 2006 Part I: Definitions Homology: Comparison of two or more protein or DNA sequence to ascertain similarities in sequences. If two genes have

More information

T H E J O U R N A L O F C E L L B I O L O G Y

T H E J O U R N A L O F C E L L B I O L O G Y Supplemental material Wang et al., http://www.jcb.org/cgi/content/full/jcb.201405026/dc1 T H E J O U R N A L O F C E L L B I O L O G Y Figure S1. Generation and characterization of unc-40 alleles. (A and

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Figure S1. lev-9 mutants are resistant to levamisole. The levamisole dose-response curves indicate that lev-9 mutants are partially resistant to levamisole similar to lev-10(kr26) mutants. unc-29(x29)

More information

Mutant Vg1 ligands disrupt endoderm and mesoderm formation in Xenopus embryos

Mutant Vg1 ligands disrupt endoderm and mesoderm formation in Xenopus embryos Development 125, 2677-2685 (1998) Printed in Great Britain The Company of Biologists Limited 1998 DEV3749 2677 Mutant Vg1 ligands disrupt endoderm and mesoderm formation in Xenopus embryos Elaine M. Joseph

More information

sides of the aleurone (Al) but it is excluded from the basal endosperm transfer layer

sides of the aleurone (Al) but it is excluded from the basal endosperm transfer layer Supplemental Data. Gómez et al. (2009). The maize transcription factor MRP-1 (Myb-Related-Protein-1) is a key regulator of the differentiation of transfer cells. Supplemental Figure 1. Expression analyses

More information

TECH NOTE Pushing the Limit: A Complete Solution for Generating Stranded RNA Seq Libraries from Picogram Inputs of Total Mammalian RNA

TECH NOTE Pushing the Limit: A Complete Solution for Generating Stranded RNA Seq Libraries from Picogram Inputs of Total Mammalian RNA TECH NOTE Pushing the Limit: A Complete Solution for Generating Stranded RNA Seq Libraries from Picogram Inputs of Total Mammalian RNA Stranded, Illumina ready library construction in

More information

Molecular Cell Biology - Problem Drill 11: Recombinant DNA

Molecular Cell Biology - Problem Drill 11: Recombinant DNA Molecular Cell Biology - Problem Drill 11: Recombinant DNA Question No. 1 of 10 1. Which of the following statements about the sources of DNA used for molecular cloning is correct? Question #1 (A) cdna

More information

Supplementary Figure 1

Supplementary Figure 1 Supplementary Figure 1 Preaxial dominance during salamander limb development. Panel (a, b) shows RNA in situ hybridisation on whole-mount limbs with Sox9 sense probe as a control. Note the absence of reactivity

More information

Biotechnology. Chapter 20. Biology Eighth Edition Neil Campbell and Jane Reece. PowerPoint Lecture Presentations for

Biotechnology. Chapter 20. Biology Eighth Edition Neil Campbell and Jane Reece. PowerPoint Lecture Presentations for Chapter 20 Biotechnology PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp Copyright

More information

Recitation CHAPTER 9 DNA Technologies

Recitation CHAPTER 9 DNA Technologies Recitation CHAPTER 9 DNA Technologies DNA Cloning: General Scheme A cloning vector and eukaryotic chromosomes are separately cleaved with the same restriction endonuclease. (A single chromosome is shown

More information

Genetics - Problem Drill 19: Dissection of Gene Function: Mutational Analysis of Model Organisms

Genetics - Problem Drill 19: Dissection of Gene Function: Mutational Analysis of Model Organisms Genetics - Problem Drill 19: Dissection of Gene Function: Mutational Analysis of Model Organisms No. 1 of 10 1. The mouse gene knockout is based on. (A) Homologous recombination (B) Site-specific recombination

More information

The F-box protein Cdc4/Fbxw7 is a novel regulator of neural crest development in Xenopus laevis

The F-box protein Cdc4/Fbxw7 is a novel regulator of neural crest development in Xenopus laevis RESEARCH ARTICLE Open Access The F-box protein Cdc4/Fbxw7 is a novel regulator of neural crest development in Xenopus laevis Alexandra D Almeida 1, Helen M Wise 2, Christopher J Hindley 1, Michael K Slevin

More information

Map-Based Cloning of Qualitative Plant Genes

Map-Based Cloning of Qualitative Plant Genes Map-Based Cloning of Qualitative Plant Genes Map-based cloning using the genetic relationship between a gene and a marker as the basis for beginning a search for a gene Chromosome walking moving toward

More information

Bi 8 Lecture 5. Ellen Rothenberg 19 January 2016

Bi 8 Lecture 5. Ellen Rothenberg 19 January 2016 Bi 8 Lecture 5 MORE ON HOW WE KNOW WHAT WE KNOW and intro to the protein code Ellen Rothenberg 19 January 2016 SIZE AND PURIFICATION BY SYNTHESIS: BASIS OF EARLY SEQUENCING complex mixture of aborted DNA

More information

TRANSGENIC ANIMALS. -transient transfection of cells -stable transfection of cells. - Two methods to produce transgenic animals:

TRANSGENIC ANIMALS. -transient transfection of cells -stable transfection of cells. - Two methods to produce transgenic animals: TRANSGENIC ANIMALS -transient transfection of cells -stable transfection of cells - Two methods to produce transgenic animals: 1- DNA microinjection - random insertion 2- embryonic stem cell-mediated gene

More information

Applicazioni biotecnologiche

Applicazioni biotecnologiche Applicazioni biotecnologiche Analisi forense Sintesi di proteine ricombinanti Restriction Fragment Length Polymorphism (RFLP) Polymorphism (more fully genetic polymorphism) refers to the simultaneous occurrence

More information

Supplemental Information

Supplemental Information Supplemental Information Itemized List Materials and Methods, Related to Supplemental Figures S5A-C and S6. Supplemental Figure S1, Related to Figures 1 and 2. Supplemental Figure S2, Related to Figure

More information

Problem Set 8. Answer Key

Problem Set 8. Answer Key MCB 102 University of California, Berkeley August 11, 2009 Isabelle Philipp Online Document Problem Set 8 Answer Key 1. The Genetic Code (a) Are all amino acids encoded by the same number of codons? no

More information

Subject Index. axis orientation - correlation with relationship to uterine horn: SMITH 15

Subject Index. axis orientation - correlation with relationship to uterine horn: SMITH 15 405 Subject Index Amino acid transport in mouse blastocyst compartments: MILLER & SCHULTZ 149 camp during limb cartilage differentiation in vitro: GAY & KOSHER 159 Antibody tissue specific, used to study

More information

Conservation and evolutionary divergence in the activity of receptor-regulated smads. Sorrentino et al.

Conservation and evolutionary divergence in the activity of receptor-regulated smads. Sorrentino et al. Conservation and evolutionary divergence in the activity of receptor-regulated smads Sorrentino et al. Sorrentino et al. EvoDevo 2012, 3:22 Sorrentino et al. EvoDevo 2012, 3:22 RESEARCH Open Access Conservation

More information

Concepts and Methods in Developmental Biology

Concepts and Methods in Developmental Biology Biology 4361 Developmental Biology Concepts and Methods in Developmental Biology June 16, 2009 Conceptual and Methodological Tools Concepts Genomic equivalence Differential gene expression Differentiation/de-differentiation

More information

Hensen's node induces neural tissue in Xenopus ectoderm. Implications for the action of the organizer in neural induction

Hensen's node induces neural tissue in Xenopus ectoderm. Implications for the action of the organizer in neural induction Development 113, 1495-1505 (1991) Printed in Great Britain The Company of Biologists Limited 1991 1495 Hensen's node induces neural tissue in Xenopus ectoderm. Implications for the action of the organizer

More information

Distinct effects of XBF-1 in regulating the cell cycle inhibitor p27 XIC1 and imparting a neural fate

Distinct effects of XBF-1 in regulating the cell cycle inhibitor p27 XIC1 and imparting a neural fate Development 127, 1303-1314 (2000) Printed in Great Britain The Company of Biologists Limited 2000 DEV1503 1303 Distinct effects of XBF-1 in regulating the cell cycle inhibitor p27 XIC1 and imparting a

More information

AGRO/ANSC/BIOL/GENE/HORT 305 Fall, 2017 Recombinant DNA Technology (Chpt 20, Genetics by Brooker) Lecture outline: (#14)

AGRO/ANSC/BIOL/GENE/HORT 305 Fall, 2017 Recombinant DNA Technology (Chpt 20, Genetics by Brooker) Lecture outline: (#14) AGRO/ANSC/BIOL/GENE/HORT 305 Fall, 2017 Recombinant DNA Technology (Chpt 20, Genetics by Brooker) Lecture outline: (#14) - RECOMBINANT DNA TECHNOLOGY is the use of in vitro molecular techniques to isolate

More information

Gene Expression Technology

Gene Expression Technology Gene Expression Technology Bing Zhang Department of Biomedical Informatics Vanderbilt University bing.zhang@vanderbilt.edu Gene expression Gene expression is the process by which information from a gene

More information

KEY Reproductive cloning Therapeutic cloning

KEY Reproductive cloning Therapeutic cloning 1. (20 pts) Define Reproductive and Therapeutic cloning. Make sure your descriptions clearly distinguish the critical differences between them. Describe an example of each. Reproductive cloning refers

More information

Pattern Formation via Small RNA Mobility SUPPLEMENTAL FIGURE 1 SUPPLEMENTAL INFORMATION. Daniel H. Chitwood et al.

Pattern Formation via Small RNA Mobility SUPPLEMENTAL FIGURE 1 SUPPLEMENTAL INFORMATION. Daniel H. Chitwood et al. SUPPLEMENTAL INFORMATION Pattern Formation via Small RNA Mobility Daniel H. Chitwood et al. SUPPLEMENTAL FIGURE 1 Supplemental Figure 1. The ARF3 promoter drives expression throughout leaves. (A, B) Expression

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature12116 Supplementary Figure 1 Theoretical prediction of temperature profiles. a, sketch of sample, immersed into X-ray beam, its environment (agarose and buffer solution are not distinguished),

More information

Gene Expression: Transcription

Gene Expression: Transcription Gene Expression: Transcription The majority of genes are expressed as the proteins they encode. The process occurs in two steps: Transcription = DNA RNA Translation = RNA protein Taken together, they make

More information

Adult and embryonic blood and endothelium derive from distinct precursor populations which are differentially programmed by BMP in Xenopus

Adult and embryonic blood and endothelium derive from distinct precursor populations which are differentially programmed by BMP in Xenopus Development 129, 5683-5695 2002 The Company of Biologists Ltd doi:10.1242/dev.00169 5683 Adult and embryonic blood and endothelium derive from distinct precursor populations which are differentially programmed

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/310/5753/1487/dc1 Supporting Online Material for Stem Cell Self-Renewal Controlled by Chromatin Remodeling Factors Rongwen Xi and Ting Xie* *To whom correspondence should

More information