U937 macrophages Human monocytic cell line ATCC CRL Plasmids Legionella vector for expression of mcherry from a ptac promoter, X.

Size: px
Start display at page:

Download "U937 macrophages Human monocytic cell line ATCC CRL Plasmids Legionella vector for expression of mcherry from a ptac promoter, X."

Transcription

1 "#$%&'("#$%&'()&(*+,&)-'*).)/*'($0'))$.*1 2(,1%/,/3&($4/(5$1+'6&,'(75%-&$'5('))058(9 Strain or plasmid Relevant properties Reference E. coli XL1-Blue reca1 enda1 gyra96 thi-1 hsdr17 supe44 rela1 lac [F proab Stratagene laciqzm15 Tn10 (Tetr)] DH5alpha F 80lacZ"M15 "(laczya-argf) U169 reca1 enda1 hsdr17 (rk, Invitrogen mk+) phoa supe44 # thi-1 gyra96 rela1 MG1655 F-, lambda-, rph-1 ATCC L. pneumophila Lens L. pneumophila serogroup 1 isolate, strain Lens (CIP ) Cazalet et al., 2004 Lens dota Lens lpl2613::kan Ferhat et al., 2009 Lens lssbd Lens lpl1509lpl1510::kan This study Paris L. pneumophila serogroup 1 isolate, strain Paris Cazalet et al., 2004 Paris lssbd Paris lpp1473lpp1474::kan This study Paris tolc Paris lpp0754::kan This study Eucaryotic cells A. castellanii Environmental isolate P. Pernin (Faculty of Pharmacy, Lyon, France) D. discoideum Dd04 [act15]:cnxa:gfp (Dicty Stock Center n DBS ) Müller-Taubenberger et al., 2001 THP1 macrophages Human monocytic cell line, gift from Mathias Faure, CIRI Inserm Tsuchiya et al., 1980 U1111, Lyon, France U937 macrophages Human monocytic cell line ATCC CRL Plasmids pxdc50 Legionella vector for expression of mcherry from a ptac promoter, X. Charpentier laciq, CmR plssbd Expression of mcherry and lssbd genes from a ptac promoter, laciq, CmR pxdc61 Legionella vector for expression of hybrid proteins from fusion with ß- X. Charpentier lactamase coding sequence blam, laciq, CmR pblam-rtxa162 Coding sequence of the last 162 aminoacids of RtxA fused to blam This study coding sequence pblam-rtxa731 Coding sequence of the last 731 aminoacids of RtxA fused to blam This study coding sequence pblam-fabi Fusion between enoyl-actyl carrier protein reductase FabI and BlaM de Felipe et al., 2008 (used as non secreted control) pmcherry mcherry coding sequence inserted in NdeI/KpnI, to replace blam in plasmid pxdc61 This study pmcherry-rtxa162 Same as pblam-rtxa162 with blam replaced by mcherry (NdeI/KpnI) This study pmcherry-rtxa731 Same as pblam-rtxa731with blam replaced by mcherry (NdeI/KpnI) This study pacyc184kan Plasmid pacyc184 with kanamycine cassette constitutive promoter This study pkan inserted(pk) plssbd h Genes lssbd (L. pneumophila Paris) cloned in pacyc184kan under the control of the pkan promoter This study ptolc h Gene tolc (L. pneumophila Paris) cloned in pacyc184kan under the This study control of the pkan promoter plssbd-tolc h Genes lssbd and tolc (L. pneumophila Paris) cloned in pacyc184kan under the control of the pkan promoter This study

2 "#$%&')":%'-/%).)/*'($0'))$.*1 :%'-/%):;&(*:<8/%/.)/*$5&-+,'71$0/.+)$%/&-7,&(='(4%/4'5(57$0/$&%4/$/* A/)$%'6$'5()'$/)8/%/&**/*80/(&++%5+%'&$/&(*&%/'(*'6&$/*'(B5,*9 C&-/ #/D./(6/EFGH?GI J/)6%'+$'5( P1-lssBD-Lens CGGGATCCATAAGCAGATCCCCGAAGGG lssbd deletion in Lens strain P2-lssBD-Lens CTTGCGGCAGCGTGATGTCTTCGCGGAGTATTCATATG lssbd deletion in Lens strain P3-lssBD-Lens ATTTCGATTCCACCGCCGCACTTAGAGAACGTTGATG lssbd deletion in Lens strain P4-lssBD-Lens CGGGATCCTAAGAGCAACCGATATCATTAAAAAGC lssbd deletion in Lens strain P1-lssBD-Paris TTACCAGATTGTTGATGCGAATG lssbd deletion in Paris strain P2-lssBD-Paris CTTGCGGCAGCGTGATGATTGTCTTCTCGGAGTATTCATATG lssbd deletion in Paris strain P3-lssBD-Paris ATTTCGATTCCACCGTAAGCAATCAGCACTTAGAGAGCG lssbd deletion in Paris strain P4-lssBD-Paris GGGTGATTCCAGCGAATTAGAG lssbd deletion in Paris strain P1-tolC-Paris ATTACAGAGAATTCCTTACCAACCG tolc deletion in Paris strain P2-tolC-Paris CTTGCGGCAGCGTGATGATCTACCAGAGGAGGTATATCCG tolc deletion in Paris strain P3-tolC-Paris ATTTCGATTCCACCGTTAGCAACTACACGTGTCAATGGA tolc deletion in Paris strain P4-tolC-Paris AAGCCTGATGTTATATTACCCAAGC tolc deletion in Paris strain P1-rtxA-Paris GCGCAAACCCAATATACATCAG rtxa deletion in Paris strain P2-rtxA-Paris CTTGCGGCAGCGTGACAGATTCAGCTAACATGTTCTGTCC rtxa deletion in Paris strain P3-rtxA-Paris ATTTCGATTCCACCGGAACAGTAAGATGAACTCATTACATTGG rtxa deletion in Paris strain P4-rtxA-Paris CACACTTAATTTAGGGTAATCAAATTGG rtxa deletion in Paris strain S-lssBD-SalI CCTTTAAGTCGACTAAATTTACTGCTTAATATAAAG lssbd (Lens) cloning for R-lssBD-SphI ATGCATGCTACCGTAACAACTTCATCAACG lssbd (Lens) cloning for S-lssParis-SalI GCGTCGACTAATCATAAAAATCATATGAATACTCCG lssbd (Paris) cloning for R-lssParis- SphI ATTTCGAAAGCATGCTTTTACACACTAATTAACGCTCTC lssbd (Paris) cloning for S-rtxA162- KpnI GCGGTACCAATGGTGGTAATGGCAATGATG Construction of BlaM-RtxA S-rtxA731- KpnI GCGGTACCTCTAGTGGTAGTAAACGTTCTGGAGG Construction of BlaM-RtxA R-rtxA-XbaI CCTCTAGAACCAATGTAATGAGTTCATCTTACTGTTC Construction of BlaM-RtxA S-mCherry- NdeI GAGATATACATATGGTTTCCAAGGG Construction of mcherry-rtxa R-mCherry- KpnI CGGGGTACCTTTGTACAGCTCATCCATGCC Construction of mcherry-rtxa

3 " #$" #%" #&" #'" #(" #)" #*" #+" " '" +" $%" $)" %" %'" %+" &%",-./" 01234" 05//67" 05//67"8 95//67" " #$" #%" #&" #'" #(" #)" #*" " '" +" $%" $)" %" %'" %+" &%" :;<=/" :;<=/"05//67" :;<=/"0325>" D=E-"AFC" D=E-"AFC" "#$%&'()G"H<2I3F"2J"/3<;=./",-./"KD#":;<=/"KD";.1"1-<=L;ML-"/3<;=./"

4 "#$%#&'()'*$ +&'()%./$ +""#$% +""#$$,-""#$% "#$%&'()0$12)")"3%(%)2$"&$4""#$$)"567*8$)*%+,"(-,.//% /9'$*'6)9$"&$)*%+,"(-,.//%%#&'()'*$:2$./$8)76%#$;'#8$6#*$4""#$$*'7%<6=<'$568$688'88'*$:2$

5 2 5 HHH" R e c o v e r e d C F U /m l *+%",'./% P a r is W T *+%",' -"#$% P a r is r tx A "#$%&'()"#$%&'&()&"*+","-"#$"./0,(0" #"-"#$"./0,(0"1,2")*(20'/)0&$"3("20',3("4,'32",($"302",536307"0*",$%&'&"*(0*",".*(*6,7&'"*+" 89:;8<=<"%/.,("&>30%&63,6")&662"1,2",22&22&$"*(&"%*/'",?&'")*(0,)0@".*(*6,7&'2"1&'&"1,2%&$",($"'&.,3(3(A"5,)0&'3,"1&'&"B/,(CD&$"57">6,C(A"*(",A,'">6,0&2"+*'"9EF"GHHH">IJ@JJK"/23(A" L0/$&(0M2"0;0&20NO"

6 D Figure S4: Cytotoxicity of rtxa strains towards A. castellanii The death of A. castellanii infected by WT strain Paris (B) and rtxa derivative strain (C) was assessed by direct observation through optical microscopy and compared to uninfected cells control (A) after 48 hours of infection. In D, the cytotoxicity of L. pneumophila Lens, Paris and mutant derivatives towards eucaryotic host cells has been measured using the Alamar blue dye, 48 hours after the initial contact.

Table S1. Bacterial strains (Related to Results and Experimental Procedures)

Table S1. Bacterial strains (Related to Results and Experimental Procedures) Table S1. Bacterial strains (Related to Results and Experimental Procedures) Strain number Relevant genotype Source or reference 1045 AB1157 Graham Walker (Donnelly and Walker, 1989) 2458 3084 (MG1655)

More information

Step 1: Digest vector with Reason for Step 1. Step 2: Digest T4 genomic DNA with Reason for Step 2: Step 3: Reason for Step 3:

Step 1: Digest vector with Reason for Step 1. Step 2: Digest T4 genomic DNA with Reason for Step 2: Step 3: Reason for Step 3: Biol/Chem 475 Spring 2007 Study Problems for Quiz 2 Quiz 2 (~50 pts) is scheduled for Monday May 14 It will cover all handouts and lab exercises to date except the handout/worksheet (yet to be distributed)

More information

Supplementary Methods

Supplementary Methods Supplementary Methods Reverse transcribed Quantitative PCR. Total RNA was isolated from bone marrow derived macrophages using RNeasy Mini Kit (Qiagen), DNase-treated (Promega RQ1), and reverse transcribed

More information

Biotechnology and Energy Conservation. Prof. Dr.oec.troph. Ir. Krishna Purnawan Candra, M.S. Program Magister Ilmu Lingkungan Universitas Mulawarman

Biotechnology and Energy Conservation. Prof. Dr.oec.troph. Ir. Krishna Purnawan Candra, M.S. Program Magister Ilmu Lingkungan Universitas Mulawarman Biotechnology and Energy Conservation Prof. Dr.oec.troph. Ir. Krishna Purnawan Candra, M.S. Program Magister Ilmu Lingkungan Universitas Mulawarman 12 th Lecture Genetic Engineering The Aim: Students can

More information

Arsenite oxidation regulator AioR regulates bacterial chemotaxis towards. arsenite in Agrobacterium tumefaciens GW4

Arsenite oxidation regulator AioR regulates bacterial chemotaxis towards. arsenite in Agrobacterium tumefaciens GW4 1 2 Arsenite oxidation regulator AioR regulates bacterial chemotaxis towards arsenite in Agrobacterium tumefaciens GW4 3 4 5 Kaixiang Shi 1, Xia Fan 1, Zixu Qiao 1, Yushan Han 1, Timothy R. McDermott 2,

More information

Supplementary Figure 1

Supplementary Figure 1 Supplementary Figure 1 2 Supplementary Figure 1: Sequence alignment of HsHSD17B8 and HsCBR4 of with KAR orthologs. The secondary structure elements as calculated by DSSP and residue numbers are displayed

More information

Supplementary Material. Increased heterocyst frequency by patn disruption in Anabaena leads to enhanced photobiological

Supplementary Material. Increased heterocyst frequency by patn disruption in Anabaena leads to enhanced photobiological Supplementary Material Increased heterocyst frequency by patn disruption in Anabaena leads to enhanced photobiological hydrogen production at high light intensity and high cell density Applied Microbiology

More information

To clone eif4a fragments into SalI-NotI sites of pacycduet-1 (pmb09); and petduet-1

To clone eif4a fragments into SalI-NotI sites of pacycduet-1 (pmb09); and petduet-1 Supplementary Methods DNA constructs and strains To clone eif4a fragments into SalI-NotI sites of pacycduet-1 (pmb09); and petduet-1 (Novagen) (pmb11), we PCR-amplified each domain from the mouse eif4a

More information

psg5 Vector INSTRUCTION MANUAL Catalog # Revision A For In Vitro Use Only

psg5 Vector INSTRUCTION MANUAL Catalog # Revision A For In Vitro Use Only psg5 Vector INSTRUCTION MANUAL Catalog #216201 Revision A For In Vitro Use Only 216201-12 LIMITED PRODUCT WARRANTY This warranty limits our liability to replacement of this product. No other warranties

More information

Xcc strains 8004, ATCC33913, B100 and B Rectangular squares indicate the

Xcc strains 8004, ATCC33913, B100 and B Rectangular squares indicate the Supplementary information Title: Characterization of the GntR family regulator HpaR1 of the crucifer black rot pathogen Xanthomonas campestris pathovar campestris. Authors: Hui-Zhao Su, Liu Wu, Yan-Hua

More information

Supplementary Information for: Engineered synthetic scaffolds for organising proteins within bacterial cytoplasms

Supplementary Information for: Engineered synthetic scaffolds for organising proteins within bacterial cytoplasms Lee et al. Supplementary Information 1 Supplementary Information for: Engineered synthetic scaffolds for organising proteins within bacterial cytoplasms Authors: Matthew J. Lee, 1 Judith Mantell, 2,3 Lorna

More information

Supplemental materials

Supplemental materials 1 2 Supplemental materials 3 4 The terminal oxidase cbb 3 functions in redox control of magnetite biomineralization in Magnetospirillum gryphiswaldense 5 Running title: Oxygen respiration and magnetite

More information

forms oligomeric ring-shaped structures and interacts with the motor ATPase FlaI " by Banerjee et al.

forms oligomeric ring-shaped structures and interacts with the motor ATPase FlaI  by Banerjee et al. Supplementary material to " FlaX, a unique component of the crenarchaeal archaellum, forms oligomeric ring-shaped structures and interacts with the motor ATPase FlaI " by Banerjee et al. Experimental procedures

More information

Supplementary figures

Supplementary figures Supplementary figures A ΔrelAΔlon ΔrelA ΔrelAΔlon Δlon ppgpp 0 Δlon B ΔrelAΔlon ΔrelA ΔrelAΔlon Δlon ppgpp 0 Δlon Fig. S1. Growth defect of strains in LB medium. Strains whose relevant genotypes are indicated

More information

Optimization of gene expression cassette for M. gryphiswaldense

Optimization of gene expression cassette for M. gryphiswaldense Optimization of gene expression cassette for M. gryphiswaldense A) 325 bp P mamdc 270 bp 170 bp 102 bp 45 bp egfp Gradual truncation P mamdc45 egfp minimal transcriptionally active promoter B) P mamdc45

More information

Supporting Information: DNA-mediated signaling by proteins with 4Fe-4S clusters is necessary for genomic integrity

Supporting Information: DNA-mediated signaling by proteins with 4Fe-4S clusters is necessary for genomic integrity Supporting Information: DNA-mediated signaling by proteins with 4Fe-4S clusters is necessary for genomic integrity Michael A. Grodick, 1 Helen M. Segal, 1 Theodore J. Zwang, 1 and Jacqueline K. Barton

More information

Escherichia coli Host Strains

Escherichia coli Host Strains Escherichia coli Host Strains INSTRUCTION MANUAL Part #200256-12 Revision #063003a For In Vitro Use Only *200256-12_063003a/* LIMITED PRODUCT WARRANTY This warranty limits our liability to replacement

More information

Deteriorating situation regarding treatment of Gram-negative infections

Deteriorating situation regarding treatment of Gram-negative infections Translocation Studies F.Vidal-Aroca, J.Dreier and M.Page Background Deteriorating situation regarding treatment of Gram-negative infections Growing concern over: Multi-resistant Acinetobacter Multi-resistant

More information

Certificate of Analysis

Certificate of Analysis Certificate of Analysis Table of Contents Product Information... 1 Description... 2 Location of Features... 3 Additional Information... 3 Quality Control Data... 4 Catalog No. Amount Lot Number 631972

More information

Stefan Schild, Rita Tamayo, Eric J. Nelson, Firdausi Qadri, Stephen B. Calderwood, and Andrew Camilli

Stefan Schild, Rita Tamayo, Eric J. Nelson, Firdausi Qadri, Stephen B. Calderwood, and Andrew Camilli Cell Host & Microbe, Volume 2 Supplemental Data Genes Induced Late in Infection Increase Fitness of Vibrio cholerae after Release into the Environment Stefan Schild, Rita Tamayo, Eric J. Nelson, Firdausi

More information

Appendix. TssA forms a gp6-like ring attached to the type VI secretion sheath. Alain Filloux 1,**

Appendix. TssA forms a gp6-like ring attached to the type VI secretion sheath. Alain Filloux 1,** Appendix TssA forms a gp6-like ring attached to the type VI secretion sheath Sara Planamente 1, Osman Salih 2, Eleni Manoli 1, David Albesa-Jové 3, Paul S. Freemont 2,* & Alain Filloux 1,** 1 MRC Centre

More information

Requirement of the Listeria monocytogenes Broad-Range Phospholipase PC-PLC during Infection of Human Epithelial Cells

Requirement of the Listeria monocytogenes Broad-Range Phospholipase PC-PLC during Infection of Human Epithelial Cells JOURNAL OF BACTERIOLOGY, Nov. 2003, p. 6295 6307 Vol. 185, No. 21 0021-9193/03/$08.00 0 DOI: 10.1128/JB.185.21.6295 6307.2003 Copyright 2003, American Society for Microbiology. All Rights Reserved. Requirement

More information

ExAssist Interference-Resistant Helper Phage

ExAssist Interference-Resistant Helper Phage ExAssist Interference-Resistant Helper Phage with XLOLR Strain Instruction Manual Catalog #211203 Revision C.0 For Research Use Only. Not for use in diagnostic procedures. 211203-12 LIMITED PRODUCT WARRANTY

More information

Regulation of Hypercompetence in Legionella pneumophila

Regulation of Hypercompetence in Legionella pneumophila JOURNAL OF BACTERIOLOGY, June 2004, p. 3814 3825 Vol. 186, No. 12 0021-9193/04/$08.00 0 DOI: 10.1128/JB.186.12.3814 3825.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. Regulation

More information

Molecular Biology. Manufactured by. Online Ordering Available

Molecular Biology. Manufactured by. Online Ordering Available Molecular Biology Manufactured by Online Ordering Available Molecular Biology Table of Contents 1 Bacterial Culture Media Powder 2 Bacterial Growth Culture Media 2 Bacterial Culture Media Broth Bottles

More information

Supporting Information. Sun et al. Development of a Biosensor Concept to Detect Production of Cluster-Specific Secondary Metabolites

Supporting Information. Sun et al. Development of a Biosensor Concept to Detect Production of Cluster-Specific Secondary Metabolites Supporting Information Sun et al. Development of a Biosensor Concept to Detect Production of Cluster-Specific Secondary Metabolites Figure S1. (A) Physical maps of chromosomal DNA containing the wild-type

More information

Molecular Biology. Manufactured by. Online Ordering Available

Molecular Biology. Manufactured by. Online Ordering Available Molecular Biology Manufactured by Online Ordering Available Molecular Biology Table of Contents 1 Bacterial Culture Media Powder 2 Bacterial Culture Agar Plates 2 Bacterial Culture Agar Heat and Pour Format

More information

Supporting Information

Supporting Information Supporting Information Liu et al. 10.1073/pnas.0801055105 SI Materials and Methods Plasmids Used for Gene Knock-In. The plasmid used for introducing the floxed gene into the chromosome of L. pneumophila

More information

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity Promega Notes Magazine Number 62, 1997, p. 02 The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity By Christine Andrews and Scott Lesley Promega

More information

ExAssist Interference-Resistant Helper Phage

ExAssist Interference-Resistant Helper Phage ExAssist Interference-Resistant Helper Phage with SOLR Strain INSTRUCTION MANUAL Catalog #200253 Revision A.01 For In Vitro Use Only 200253-12 LIMITED PRODUCT WARRANTY This warranty limits our liability

More information

SUPPLEMENTAL MATERIALS & METHODS

SUPPLEMENTAL MATERIALS & METHODS SUPPLEMENTAL MATERIALS & METHODS Construction of C. jejuni 81-176 Δ1228 and Δ1228c complemented strain. The cjj81176_1228 gene was PCR amplified with iproof (Biorad) from 81-176 genomic DNA using primers

More information

Hetero-Stagger PCR Cloning Kit

Hetero-Stagger PCR Cloning Kit Product Name: Code No: Size: DynaExpress Hetero-Stagger PCR Cloning Kit DS150 20 reactions Kit Components: Box 1 (-20 ) phst-1 Vector, linearized Annealing Buffer Ligase Mixture phst Forward Sequence Primer

More information

Improvements of E. coli K12 for recombinant DNA methods: 1) Removal of the EcoK restriction system (hsdr - )

Improvements of E. coli K12 for recombinant DNA methods: 1) Removal of the EcoK restriction system (hsdr - ) E. coli K12 Improvements of E. coli K12 for recombinant DNA methods: 1) Removal of the EcoK restriction system (hsdr - ) http://www.biochem.arizona.edu/classes/bioc471 Improvements of E. coli K12 for recombinant

More information

Construction and Characterization of Broad-Spectrum Promoters for Synthetic Biology

Construction and Characterization of Broad-Spectrum Promoters for Synthetic Biology Construction and Characterization of Broad-Spectrum Promoters for Synthetic Biology Sen Yang a, Qingtao Liu a, Yunfeng Zhang a, Guocheng Du a,b, Jian Chen a,b*, Zhen Kang a,b* a The Key Laboratory of Industrial

More information

ElectroTen-Blue Electroporation Competent Cells

ElectroTen-Blue Electroporation Competent Cells ElectroTen-Blue Electroporation Competent Cells Instruction Manual Catalog #200159 Revision C.0 For Research Use Only. Not for use in diagnostic procedures. 200159-12 LIMITED PRODUCT WARRANTY This warranty

More information

BP-reaction (recombination of PCR products into entry vector) Created on: 06/01/10 Version: 1.1 No.: 1 Page 1 of 6

BP-reaction (recombination of PCR products into entry vector) Created on: 06/01/10 Version: 1.1 No.: 1 Page 1 of 6 Created on: 06/01/10 Version: 1.1 No.: 1 Page 1 of 6 1. Background This reaction generates bacteria that contain recombinant Gateway-compatible entry plasmid. The PCRamplified ORFs (SOPs ORF-PCR 1 (two

More information

Supporting Information-Tables

Supporting Information-Tables Supporting Information-Tables Table S1. Bacterial strains and plasmids used in this work Bacterial strains Description Source of reference Streptococcus pneumoniae 1 Cp1015 non-capsulated and βl susceptible

More information

ExAssist Interference-Resistant Helper Phage

ExAssist Interference-Resistant Helper Phage ExAssist Interference-Resistant Helper Phage with SOLR Strain Instruction Manual Catalog #200253 Revision C.0 For Research Use Only. Not for use in diagnostic procedures. 200253-12 LIMITED PRODUCT WARRANTY

More information

A systematic analysis of the in vitro and in vivo functions of the HD-GYP. Robert W. McKee, Ankunda Kariisa, Benjamin Mudrak, Courtney Whitaker and

A systematic analysis of the in vitro and in vivo functions of the HD-GYP. Robert W. McKee, Ankunda Kariisa, Benjamin Mudrak, Courtney Whitaker and SUPPLEMENTAL TABLES S1-S3. A systematic analysis of the in vitro and in vivo functions of the HD-GYP domain proteins of Vibrio cholerae Robert W. McKee, Ankunda Kariisa, Benjamin Mudrak, Courtney Whitaker

More information

1. DNA Cloning. Blunt-end DNA Cloning Kits TA DNA Cloning Kits Universal DNA Cloning Kits Chemically competent cells Mutagenesis Other compounds

1. DNA Cloning. Blunt-end DNA Cloning Kits TA DNA Cloning Kits Universal DNA Cloning Kits Chemically competent cells Mutagenesis Other compounds 1. DNA Cloning Blunt-end DNA Cloning Kits TA DNA Cloning Kits Universal DNA Cloning Kits Chemically competent cells Mutagenesis Other compounds Photo: Embryo of lily ovary 10 Accelerating your Molecular

More information

QIAexpress pqe vectors

QIAexpress pqe vectors provides materials for expression, purification, detection, and assay of 6xHis-tagged proteins. The QIAexpressionist covers expression and purification products (pqe vectors, host strains, and i-ta chromatographic

More information

Shah, N.R., et al., Supplemental Data SUPPLEMENTAL TEXT. Cloning:

Shah, N.R., et al., Supplemental Data SUPPLEMENTAL TEXT. Cloning: Shah, N.R., et al., Supplemental Data SUPPLEMENTAL TEXT Cloning: pnmlgmab: the region containing lgma,lgmb, and the intergenic region upstream of lgma was amplified by PCR using genomic DNA of B. pertussis

More information

Microbiology 微生物学 Spring-Summer

Microbiology 微生物学 Spring-Summer Microbiology 微生物学 2017 Spring-Summer Relevant Information and Resources Course slides can be found at http://mypage.zju.edu.cn/haichun 教学工作 Course-related questions will be answered through emails. Textbook:

More information

Supplementary material

Supplementary material Supplementary material The RNA chaperone Hfq is essential for virulence and modulates the expression of four adhesins in Yersinia enterocolitica Tamara Katharina Kakoschke 1, Sara Carina Kakoschke 1, Catharina

More information

Strain, plasmid, primer or dsdna fragment Relevant genotype, description, or sequence

Strain, plasmid, primer or dsdna fragment Relevant genotype, description, or sequence Supplemental Tables Table S1. Strains, Plasmids, Primers and dsdna fragments used in this study Strain, plasmid, primer or dsdna fragment Relevant genotype, description, or sequence Reference or Source

More information

Δsig. ywa. yjbm. rela -re. rela

Δsig. ywa. yjbm. rela -re. rela A wt A. A, P rela -re la A/Δ yjbm A/Δ ywa C A, P hy-s igd, D (A, P IPTG hy-s igd, ) D D (+ IPTG ) D/Δ rela Figure S1 SigD B. Figure S1. SigD levels and swimming motility in (p)ppgpp synthetase mutants.

More information

Mutagenesis for Studying Gene Function Spring, 2007 Guangyi Wang, Ph.D. POST103B

Mutagenesis for Studying Gene Function Spring, 2007 Guangyi Wang, Ph.D. POST103B Mutagenesis for Studying Gene Function Spring, 2007 Guangyi Wang, Ph.D. POST103B guangyi@hawaii.edu http://www.soest.hawaii.edu/marinefungi/ocn403webpage.htm Overview of Last Lecture DNA microarray hybridization

More information

Escherichia coli Host Strains

Escherichia coli Host Strains Escherichia coli Host Strains INSTRUCTION MANUAL Part #200256-12 Revision B.0 For Research Use Only. Not for use in diagnostic procedures. 200256-12 LIMITED PRODUCT WARRANTY This warranty limits our liability

More information

Molecular Genetic Analysis of Phosphite and Hypophosphite Oxidation by Pseudomonas stutzeri WM88

Molecular Genetic Analysis of Phosphite and Hypophosphite Oxidation by Pseudomonas stutzeri WM88 JOURNAL OF BACTERIOLOGY, Nov. 1998, p. 5547 5558 Vol. 180, No. 21 0021-9193/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Molecular Genetic Analysis of Phosphite and

More information

Changes in the periplasmic linker and in the expression level a ect the activity of ToxR and V-ToxR fusion proteins in Escherichia coli

Changes in the periplasmic linker and in the expression level a ect the activity of ToxR and V-ToxR fusion proteins in Escherichia coli FEBS 19892 FEBS Letters 423 (1998) 371^375 Changes in the periplasmic linker and in the expression level a ect the activity of ToxR and V-ToxR fusion proteins in Escherichia coli Roberto Jappelli*, Sydney

More information

Regulatory Mechanism of Mycotoxin Tenuazonic Acid Production in Pyricularia oryzae

Regulatory Mechanism of Mycotoxin Tenuazonic Acid Production in Pyricularia oryzae 1 Supporting Information 2 3 4 5 6 Regulatory Mechanism of Mycotoxin Tenuazonic Acid Production in Pyricularia oryzae Choong-Soo Yun, Takayuki Motoyama, and Hiroyuki Osada* Chemical Biology Research Group,

More information

Competent Cells Selection Guide

Competent Cells Selection Guide Contents 1.0 Introduction 1.1 What is Transformation? 1.2 Chemically Competent E. coli cells 1.3 Electrocompetent E. coli cells 1.4 Transformation Efficiency 1.5 Genotypes of Competent Cells 2.0 Strains

More information

Received 21 July 1998/Accepted 8 October TABLE 1. Strains and plasmids used

Received 21 July 1998/Accepted 8 October TABLE 1. Strains and plasmids used JOURNAL OF BACTERIOLOGY, Dec. 1998, p. 6764 6768 Vol. 180, No. 24 0021-9193/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. A Novel Serine/Threonine Protein Kinase Homologue

More information

Tuberculosis is a Worldwide disease. of the world population has latent Tuberculosis. 1.3 deaths per year. Million

Tuberculosis is a Worldwide disease. of the world population has latent Tuberculosis. 1.3 deaths per year. Million P RIS bettencourt Tuberculosis is a Worldwide disease 1 3 of the world population has latent Tuberculosis 1.3 deaths per year Million Fight tuberculosis with modern weapons detect target infiltrate sabotage

More information

camp receptor protein regulates mouse colonization, motility, fimbria-mediated adhesion, and stress tolerance in uropathogenic Proteus mirabilis

camp receptor protein regulates mouse colonization, motility, fimbria-mediated adhesion, and stress tolerance in uropathogenic Proteus mirabilis 1 camp receptor protein regulates mouse colonization, motility, fimbria-mediated 2 adhesion, and stress tolerance in uropathogenic Proteus mirabilis 3 4 Yi-Lin Tsai, Hsiung-Fei Chien, Kuo-Tong Huang, Wen-Yuan

More information

Gateway Vectors for BiFC

Gateway Vectors for BiFC Gateway Vectors for BiFC 1. The enhanced YFP (EYFP) are used (Split EYFP). 2. The Fusion fusion gene is expressed by CaMV35S promoter. 3. The N- or C-terminal fragments of EYFP are fused subsequent to

More information

Yeast 2-Hybrid Kayla Nygaard

Yeast 2-Hybrid Kayla Nygaard Yeast 2-Hybrid 2.26.18 Kayla Nygaard Y2H - What is it? A method to screen for protein-protein interactions in yeast Capitalizes on GAL4 system in yeast. GAL4 has 2 domains DNA-Binding Domain (DB) Transcriptional

More information

pcmv-script Vector INSTRUCTION MANUAL Catalog # Revision A For In Vitro Use Only

pcmv-script Vector INSTRUCTION MANUAL Catalog # Revision A For In Vitro Use Only pcmv-script Vector INSTRUCTION MANUAL Catalog #212220 Revision A For In Vitro Use Only 212220-12 LIMITED PRODUCT WARRANTY This warranty limits our liability to replacement of this product. No other warranties

More information

molecular microbiology

molecular microbiology molecular microbiology 030618dl Sold exclusively through Manufactured by molecular microbiology 1 Culture Media Powder 2 Prepared Culture Media 2 Prepared Culture Media (Broth Bottles and Flasks) 3 Antibiotics

More information

The Legionella pneumophila Effector SidJ Is Required for Efficient Recruitment of Endoplasmic Reticulum Proteins to the Bacterial Phagosome

The Legionella pneumophila Effector SidJ Is Required for Efficient Recruitment of Endoplasmic Reticulum Proteins to the Bacterial Phagosome INFECTION AND IMMUNITY, Feb. 2007, p. 592 603 Vol. 75, No. 2 0019-9567/07/$08.00 0 doi:10.1128/iai.01278-06 Copyright 2007, American Society for Microbiology. All Rights Reserved. The Legionella pneumophila

More information

New Platform for Cytochrome P450 Reaction Combining in Situ Immobilization on Biopolymer

New Platform for Cytochrome P450 Reaction Combining in Situ Immobilization on Biopolymer Supporting Information New Platform for Cytochrome P450 Reaction Combining in Situ Immobilization on Biopolymer Jae Hyung Lee, Dong Heon Nam, Sahng Ha Lee, Jong Hyun Park, Si Jae Park, Seung Hwan Lee,

More information

Fig. S1. CrgA intracellular levels in M. tuberculosis. Ten and twenty micrograms of

Fig. S1. CrgA intracellular levels in M. tuberculosis. Ten and twenty micrograms of Supplementary data Fig. S1. CrgA intracellular levels in M. tuberculosis. Ten and twenty micrograms of cell free protein lysates from WT M. tuberculosis (Rv) together with various known concentrations

More information

Cyclic-di-GMP regulates lipopolysaccharide modification and contributes to Pseudomonas aeruginosa immune evasion

Cyclic-di-GMP regulates lipopolysaccharide modification and contributes to Pseudomonas aeruginosa immune evasion In the format provided by the authors and unedited. SUPPLEMENTARY INFORMATION VOLUME: 2 ARTICLE NUMBER: 17027 Cyclic-di-GMP regulates lipopolysaccharide modification and contributes to Pseudomonas aeruginosa

More information

For on campus investigators use Department and Mail Code. For off campus investigators provide complete mailing address.

For on campus investigators use Department and Mail Code. For off campus investigators provide complete mailing address. FORM A - Protocol for Use of Recombinant or Synthetic Nucleic Acid Molecules in Research Idaho State University, Office for Research Institutional Biosafety Committee (IBC) 65 Alvin Ricken Drive, Pocatello,

More information

Adaptive laboratory evolution of Corynebacterium glutamicum towards higher

Adaptive laboratory evolution of Corynebacterium glutamicum towards higher Supplementary material to Adaptive laboratory evolution of Corynebacterium glutamicum towards higher growth rates on glucose minimal medium Eugen Pfeifer, Cornelia Gätgens, Tino Polen *, and Julia Frunzke*

More information

Figure S1. Sequence conservation among the four S. aureus agr alleles. Nucleotide sequences of the four agr alleles cloned in this study (S.

Figure S1. Sequence conservation among the four S. aureus agr alleles. Nucleotide sequences of the four agr alleles cloned in this study (S. Figure S1. Sequence conservation among the four S. aureus agr alleles. Nucleotide sequences of the four agr alleles cloned in this study (S. aureus agr-i, -II, -III, and -IV) were aligned with CLC Sequence

More information

BIO/CHEM 475 Molecular Biology Laboratory Spring 2007 Recombinant DNA Technology: Cloning restriction fragments into a plasmid vector

BIO/CHEM 475 Molecular Biology Laboratory Spring 2007 Recombinant DNA Technology: Cloning restriction fragments into a plasmid vector BIO/CHEM 475 Molecular Biology Laboratory Spring 2007 Recombinant DNA Technology: Cloning restriction fragments into a plasmid vector Table of Contents Goal of Experiment pg 1 Timetable pg 1-2 Week 2 lab

More information

Michal Feldman and Gil Segal*

Michal Feldman and Gil Segal* INFECTION AND IMMUNITY, Aug. 2004, p. 4503 4511 Vol. 72, No. 8 0019-9567/04/$08.00 0 DOI: 10.1128/IAI.72.8.4503 4511.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. A Specific

More information

7.02 Recombinant DNA Methods Spring 2005 Exam Study Questions Answer Key

7.02 Recombinant DNA Methods Spring 2005 Exam Study Questions Answer Key MIT Department of Biology 7.02 Experimental Biology & Communication, Spring 2005 7.02/10.702 Spring 2005 RDM Exam Study Questions 7.02 Recombinant DNA Methods Spring 2005 Exam Study Questions Answer Key

More information

Supplemental Fig. S1. Key to underlines: Key to amino acids:

Supplemental Fig. S1. Key to underlines: Key to amino acids: AspA-F1 AspA 1 MKQMETKGYGYFRKTKAYGLVCGIT--------------LAGALTLGTTSVSADDVTTLNPATNLTTLQTPPTADQTQLAHQAGQQSGELVSEVSNTEWD 86 SspB 1 MQKREV--FG-FRKSKVAKTLCGAV-LGAALIAIADQQVLADEVTETNSTANVAVTTTGNPATNLPEAQGEATEAASQSQAQAGSKDGALPVEVSADDLN

More information

Chapter 20 Recombinant DNA Technology. Copyright 2009 Pearson Education, Inc.

Chapter 20 Recombinant DNA Technology. Copyright 2009 Pearson Education, Inc. Chapter 20 Recombinant DNA Technology Copyright 2009 Pearson Education, Inc. 20.1 Recombinant DNA Technology Began with Two Key Tools: Restriction Enzymes and DNA Cloning Vectors Recombinant DNA refers

More information

Certificate of Analysis

Certificate of Analysis Certificate of Analysis pet6xhn Expression Vector Set Contents Product Information... 1 pet6xhn-n, pet6xhn-c, and pet6xhn-gfpuv Vector Information... 2 Location of Features... 4 Additional Information...

More information

MIT Department of Biology 7.013: Introductory Biology - Spring 2005 Instructors: Professor Hazel Sive, Professor Tyler Jacks, Dr.

MIT Department of Biology 7.013: Introductory Biology - Spring 2005 Instructors: Professor Hazel Sive, Professor Tyler Jacks, Dr. MIT Department of Biology 7.01: Introductory Biology - Spring 2005 Instructors: Professor Hazel Sive, Professor Tyler Jacks, Dr. Claudette Gardel iv) Would Xba I be useful for cloning? Why or why not?

More information

GENETICS - CLUTCH CH.5 GENETICS OF BACTERIA AND VIRUSES.

GENETICS - CLUTCH CH.5 GENETICS OF BACTERIA AND VIRUSES. !! www.clutchprep.com CONCEPT: WORKING WITH MICROORGANISMS Bacteria are easy to with in a laboratory setting They are fast dividing, take up little space, and are easily grown in a lab - Plating is when

More information

SAS6-like protein in Plasmodium indicates that conoid-associated apical complex proteins persist in invasive stages within the mosquito vector

SAS6-like protein in Plasmodium indicates that conoid-associated apical complex proteins persist in invasive stages within the mosquito vector SAS6-like protein in Plasmodium indicates that conoid-associated apical complex proteins persist in invasive stages within the mosquito vector Richard J. Wall 1,#, Magali Roques 1,+, Nicholas J. Katris

More information

Reading Lecture 3: 24-25, 45, Lecture 4: 66-71, Lecture 3. Vectors. Definition Properties Types. Transformation

Reading Lecture 3: 24-25, 45, Lecture 4: 66-71, Lecture 3. Vectors. Definition Properties Types. Transformation Lecture 3 Reading Lecture 3: 24-25, 45, 55-66 Lecture 4: 66-71, 75-79 Vectors Definition Properties Types Transformation 56 VECTORS- Definition Vectors are carriers of a DNA fragment of interest Insert

More information

Micro 411/Genome Sci411 Exam Three

Micro 411/Genome Sci411 Exam Three Name Question 1. 20pts Diagram the initiation of recombination by RecBCD starting with double stranded DNA. Make sure to label all enzymes, the location of the Chi site and where RecA is required. A. 5

More information

Mcbio 316: Exam 3. (10) 2. Compare and contrast operon vs gene fusions.

Mcbio 316: Exam 3. (10) 2. Compare and contrast operon vs gene fusions. Mcbio 316: Exam 3 Name (15) 1. Transposons provide useful tools for genetic analysis. List 5 different uses of transposon insertions. ANSWER: Many answers are possible, however, if multiple items on the

More information

Biol/Chem 475 Spring 2007

Biol/Chem 475 Spring 2007 Biol/Chem 475 Spring 2007 Goal of lab: For most of the quarter, we will be exploring a gene family that was first discovered in fruitlfies and then found to be present in humans and worms and fish and

More information

Supporting information

Supporting information Supporting information Construction of strains and plasmids To create ptc67, a PCR product obtained with primers cc2570-162f (gcatgggcaagcttgaggacggcgtcatgt) and cc2570+512f (gaggccgtggtaccatagaggcgggcg),

More information

SUPPLEMENTAL TABLE S1. Additional descriptions of plasmid constructions and the oligonucleotides used Plasmid or Oligonucleotide

SUPPLEMENTAL TABLE S1. Additional descriptions of plasmid constructions and the oligonucleotides used Plasmid or Oligonucleotide SUPPLEMENTAL TABLE S1. Additional descriptions of plasmid constructions and the oligonucleotides used Plasmid or Oligonucleotide former/ working Description a designation Plasmids pes213a b pes213-tn5

More information

Discover a star-studded cast of competent cells: for all your transformation needs

Discover a star-studded cast of competent cells: for all your transformation needs Competent E. coli Discover a star-studded cast of competent cells: for all your transformation needs You can depend on Invitrogen s competent E. coli to be: Reliable Efficient Innovative Routine cloning

More information

G0463 pscaavmcsbghpa MCS. Plasmid Features:

G0463 pscaavmcsbghpa MCS. Plasmid Features: 3200 G0463 pscaavmcsbghpa Plasmid Features: Coordinates Feature 980-1085 AAV2 ITR 106bp (mutated ITR) 1110-1226 MCS 1227-1440 BgHpA 1453-1595 AAV2 ITR (143bp) 2496-3356 B-lactamase (Ampicillin) Antibiotic

More information

Supplementary Figure 1 Performance analysis of RedLibs (version 0.2.3). Supplementary Figure 2

Supplementary Figure 1 Performance analysis of RedLibs (version 0.2.3). Supplementary Figure 2 Supplementary Figure 1 Performance analysis of RedLibs (version 0.2.3). The required calculation time for the evaluation of all sub-libraries with a given target size are plotted against the combinatorial

More information

ANSWERS TO Problem set questions from Exam 2 Unit Mutations, Bacterial Genetics, and Bacterial Gene Regulation

ANSWERS TO Problem set questions from Exam 2 Unit Mutations, Bacterial Genetics, and Bacterial Gene Regulation ANSWERS TO Problem set questions from Exam 2 Unit Mutations, Bacterial Genetics, and Bacterial Gene Regulation Central Dogma, Mutagens and Mutations 1. The three stop codons in the genetic code are 5 UAG3,

More information

List of 22 R. pseudosolanacearum Ps29 mcp genes and their deletion mutants

List of 22 R. pseudosolanacearum Ps29 mcp genes and their deletion mutants Tale S1 List of 22 R. pseudosolanacearum Ps29 mcp genes and their deletion mutants mcp No. Gene a Mutant strain Numer of amino acids Identity (%) c Accession No. GMI1 Ps29 1 RSc66 DPS1 617 617 1 LC5226

More information

Chapter 4. Recombinant DNA Technology

Chapter 4. Recombinant DNA Technology Chapter 4 Recombinant DNA Technology 5. Plasmid Cloning Vectors Plasmid Plasmids Self replicating Double-stranded Mostly circular DNA ( 500 kb) Linear : Streptomyces, Borrelia burgdorferi Replicon

More information

Red Type Indicates Unique Site

Red Type Indicates Unique Site 3600 G0605 pscaavmcmvmcsbghpa Plasmid Features: Coordinates Feature 980-1084 AAV2 5 ITR 1144-1666 modified CMV 1667-1761 MCS 1762-1975 BgHpA 1987-2114 AAV2 3 ITR 3031-3891 B-lactamase (Ampicillin) Antibiotic

More information

[24] Alternatives to X-Galactopyranoside in Screening Recombinant Clones Based on puc-derived Plasmid Vectors

[24] Alternatives to X-Galactopyranoside in Screening Recombinant Clones Based on puc-derived Plasmid Vectors [24] Alternatives to X-Galactopyranoside in Screening Recombinant Clones Based on puc-derived Plasmid Vectors By PETR KARLOVSKY Introduction The standard repertoire of a molecular geneticist includes puc

More information

A Screen of Coxiella burnetii Mutants Reveals Important Roles for Dot/Icm Effectors and Host Autophagy in Vacuole Biogenesis

A Screen of Coxiella burnetii Mutants Reveals Important Roles for Dot/Icm Effectors and Host Autophagy in Vacuole Biogenesis A Screen of Coxiella burnetii Mutants Reveals Important Roles for Dot/Icm Effectors and Host Autophagy in Vacuole Biogenesis Hayley J. Newton 1,2, Lara J. Kohler 1, Justin A. McDonough 1, Morayma Temoche-Diaz

More information

Hyper sensitive protein detection by Tandem-HTRF reveals Cyclin D1

Hyper sensitive protein detection by Tandem-HTRF reveals Cyclin D1 Hyper sensitive protein detection by Tandem-HTRF reveals Cyclin D1 dynamics in adult mouse Alexandre Zampieri, Julien Champagne, Baptiste Auzemery, Ivanna Fuentes, Benjamin Maurel and Frédéric Bienvenu

More information

Cytochrome c heme lyase can mature a fusion peptide composed of the amino-terminal residues of horse cytochrome c

Cytochrome c heme lyase can mature a fusion peptide composed of the amino-terminal residues of horse cytochrome c Cytochrome c heme lyase can mature a fusion peptide composed of the amino-terminal residues of horse cytochrome c Wesley B. Asher a and Kara L. Bren a * a Department of Chemistry, University of Rochester,

More information

Supplementary Figure 1

Supplementary Figure 1 Supplementary Figure 1: Replica plating for confirmation of mc2δilvh mutants. Twenty hygromycin sensitive colonies as observed in Figure 4D during replica plating were spotted in replicates on 7H10 agar

More information

HuSdL TM Phage Display Human Single Domain Antibody Library Kit

HuSdL TM Phage Display Human Single Domain Antibody Library Kit HuSdL TM Phage Display Human Single Domain Antibody Library Kit User Manual Cat. No. HuSdL TM Published on Feb 19, 2011 I. List of Components HuSdL TM : Phage Display Human Single Domain Antibody Library.

More information

Supporting Information

Supporting Information Supporting Information Yosef et al. 10.1073/pnas.1500107112 SI Materials and Methods Reagents, Strains, and Plasmids. LB medium (10 g/l tryptone, 5 g/l yeast extract, and 5 g/l NaCl) and agar were from

More information

transcription and the promoter occupancy of Smad proteins. (A) HepG2 cells were co-transfected with the wwp-luc reporter, and FLAG-tagged FHL1,

transcription and the promoter occupancy of Smad proteins. (A) HepG2 cells were co-transfected with the wwp-luc reporter, and FLAG-tagged FHL1, Supplementary Data Supplementary Figure Legends Supplementary Figure 1 FHL-mediated TGFβ-responsive reporter transcription and the promoter occupancy of Smad proteins. (A) HepG2 cells were co-transfected

More information

W I S S E N T E C H N I K L E I D E N S C H A F T MOL.911. HNL Expression. u

W I S S E N T E C H N I K L E I D E N S C H A F T MOL.911. HNL Expression. u 1 W I S S E N T E C H N I K L E I D E N S C H A F T MOL.911 HNL Expression u www.tugraz.at 2 Hydroxynitrile lyase (Hnl) R 1 HCN R 1 O H R 2 C O R 2 C * C N S-selective: Hevea brasiliensis R-selective:

More information

A fail-safe mechanism in the septal ring assembly pathway generated by the sequential recruitment of cell separation amidases and their activators

A fail-safe mechanism in the septal ring assembly pathway generated by the sequential recruitment of cell separation amidases and their activators Supplemental Information for: A fail-safe mechanism in the septal ring assembly pathway generated by the sequential recruitment of cell separation amidases and their activators Nick T. Peters, Thuy Dinh,

More information