Fructose-1,6-bisphosphate and its role on the flux-dependent regulation of metabolism Bley Folly, Brenda
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1 University of Groningen Fructose-1,6-bisphosphate and its role on the flux-dependent regulation of metabolism Bley Folly, Brenda IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2018 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Bley Folly, B. (2018). Fructose-1,6-bisphosphate and its role on the flux-dependent regulation of metabolism [Groningen]: University of Groningen Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date:
2 Fructose-1,6-bisphosphate and its role on the Fructose-1,6-bisphosphate and its role flux-dependent on the regulation flux-dependent of metabolism regulation of metabolism Brenda Bley Folly 2017 Brenda Bley Folly 2017
3 The work published on this thesis was carried out at the Molecular Systems Biology research The work group published of the on Groningen this thesis Biomolecular was carried out Sciences at the Molecular and Biotechnology Systems Biology institute (GBB) at the University of Groningen, The Netherlands. research group of the Groningen Biomolecular Sciences and Biotechnology institute This (GBB) work at the was University financially of Groningen, support by The the Netherlands. ScienceÊwithoutÊBorders program, from the Brazilian National Council for Scientific and Technological Development (CNPq), process / This work was financially supported by the Science without Borders program, from the Brazilian National Council for Scientific and Technological Development (CNPq), process / ISBN: (printed version) ISBN: (printed version) ISBN: (electronic version) ISBN: (electronic version) Printed by: Proefschriftmaken, The The Netherlands Cover: Picture by Freepik. Design by Ron Luchies. Copyright 2017 by Brenda Bley Folly. All rights reserved. No part of this thesis may Copyright be reproduced, 2017 stored by Brenda in a retrieval Bley Folly. system All or rights transmitted reserved. in any No form part or of by this any thesis means may be without reproduced, the prior stored written in a permission retrieval system of the author. transmitted in any form or by any means without the prior written permission of the author.
4 Fructose-1,6-bisphosphate and its role on the fl ux-dependent regulation of metabolism Fructose-1,6-bisphosphate and its role on the flux-dependent PhD thesis regulation of metabolism to obtain the degree of PhD at the University of Groningen on the authority of the Rector Magnifi PhD cus thesis Prof. E. Sterken and in accordance with the decision by the College of Deans. This to thesis obtain will the be degree defended of PhD in at public the on University of Groningen on the authority of the Friday Rector 19 Magnificus January 2018 Prof. at E Sterken hours and in accordance with the decision by the College of Deans. This thesis will be defended in public on Friday 19 January 2018 at hours by by Brenda Bley Folly born on 14 November 1983 in Curitiba, Brazil Brenda Bley Folly born on 14 November 1983 in Curitiba, Brazil
5 Supervisor Prof. Supervisor M. Heinemann Prof. M. Heinemann Assessment Committee Prof. D.J. Slotboom Prof. M.W. Fraaije Prof. P. Picotti Assessment Committee Prof. D.J. Slotboom Prof. M.W. Fraaije Prof. P. Picotti
6 To my parents and my brother To my parents and my brother
7
8 Table of contents Chapter 1 The role of fructose-1,6-bisphosphate in metabolic regulation 9 Chapter 2 Fructose-1,6-bisphosphate might regulate hexokinase activity indirectly via chelating metal ions 33 Chapter 3 Conformational changes of enzymes observed upon fructose-1,6- bisphosphate addition are not due to a direct interaction 53 Chapter 4 Comprehensive biochemical assessment of the interaction between the flux-signaling metabolite fructose-1,6-bisphosphate and the bacterial transcription factors CggR and Cra 73 Chapter 5 Conclusions and outlook 105 Chapter 6 Summary Samenvatting Resumo Acknowledgements 121
9 8
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