Polo Bibliotecario di Scienze, Farmacologia e Scienze Farmaceutiche. Scuola di Dottorato di Ricerca in Scienze Molecolari

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1 Polo Bibliotecario di Scienze, Farmacologia e Scienze Farmaceutiche Scuola di Dottorato di Ricerca in Scienze Molecolari Open research data Scuola di Dottorato di Ricerca in Scienze Molecolari Information literacy in Chemistry October 10, 2014 Sistema Bibliotecario di Ateneo Università di Padova Emanuela Casson Emanuela Casson

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4 The current practice is not be explained by a disinterest of researchers in other people s data. 63% of the researchers, who do not currently make use of other researchers data, would like to do so in the (near) future. But When asked whether they ever truly needed digital research data by other researchers that was, for whatever reason, not available, 53% of the respondents answered yes.

5 Open data: definition(s) Knowledge is open if anyone is free to access, use, modify, and share it - subject, at most, to measures that preserve provenance and openness A piece of data is open if anyone is free to use, reuse, and redistribute it - subject only, at most, to the requirement to attribute and/or share-alike By open data in science we mean that it is freely available on the public internet permitting any user to download, copy, analyse, re-process, pass them to software or use them for any other purpose without financial, legal, or technical barriers pantonprinciples.org/

6 Open research data - what Data may be raw or primary data (eg direct from measurement), or derivative of primary data, but are not yet the product of analysis or interpretation other than calculation saoe.pdf) Factual data Data observational, computational, or experimental Graphs and tables but there is a grey area between creative text and factual data

7 Open data - how availability and access reuse and redistribution interoperability universal participation metadata

8 Open data - why Reasons for open data: Moral: closed can be unjust Ethical: community norms expect it Utilitarian: greater communal good Personal: greater pesonal benefit Most scientific data is lost; costs many billions mandates?

9 Panton Principles Panton Principles, Principles for open data in science. Murray-Rust, Peter; Neylon, Cameron; Pollock, Rufus; Wilbanks, John; (19 Feb 2010). The Panton Principles are a set of recommendations that address how best to make published data from scientific studies available for re-use.

10 OD - Licenses Use a recognized waiver or license that is appropriate for data es. CC0 and PDDL. Noncommercial and other restrictive clauses should not be used CC0 Creative Commons zero 1.0/ PDDL - Public Domain Dedication and License

11 OD for data users How do I know that data is Open Data? Are there any restrictions on what I can do with Open Data?

12 Figshare and Dryad Figshare is an online digital repository where researchers can preserve and share their research outputs, including figures, datasets, images, and videos Dryad hosts research data underlying scientific and medical publications. Historically, the repository has been strongest in the life sciences

13 Life sciences: GenBank and H5N1 GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42). Ilaria Capua and H5N1

14 Molecular & supramolecular structure Protein Circular Dichroism Data Bank (PCDDB) Crystallography Open Database (COD) Coherent X-ray Imaging Data Bank (CXIDB) Biological Magnetic Resonance Data Bank (BMRB) Electron Microscopy Data Bank (EMDB) Worldwide Protein Data Bank (wwpdb) Sistema Bibliotecario di Ateneo Università di Padova

15 Crystallography open database Open-access collection of crystal structures of organic, inorganic, metal-organic compounds and minerals, excluding biopolymers

16 Chemistry and chemical biology cananolab This is a web-based application designed to facilitate data sharing in the research community to expedite and validate the use of nanomaterials in biomedicine PubChem PubChem is a freely accessible database (FTP) that provides information about small molecules. ChemSpider ChemSpider is a free chemical structure database providing fast access to over 32 million structures, properties, and associated information

17 EBI - European Bioinformatics Institute ChEBI : the database and ontology of Chemical Entities of Biological Interest ChEMBL - Bioactive data for drug discovery

18 Others repositories