The role of the second growth-factor domain of human factor IXa in

Size: px
Start display at page:

Download "The role of the second growth-factor domain of human factor IXa in"

Transcription

1 Biochem. J. (1995) 31, (Printed in Great Britain) 427 The role of the second growth-factor domain of human factor IXa in to platelets and in factor-x activation Syed S. AHMAD,*t Razia RAWALA,* Wing-Fai CHEUNG, 11 Darrel W. STAFFORD and Peter N. WALSH*tt *The Sol Sherry Thrombosis Research Center, tdepartment of Biochemistry and tdepartment of Medicine, Temple University School of Medicine, Philadelphia, PA 1914, U.S.A., and Department of Biology, University of North Carolina, Chapel Hill, NC 27599, U.S.A. binding To study the structural requirements for factor IXa binding to platelets, we have carried out equilibrium binding studies with human factor IXa after replacing the second epidermal growth factor (EGF) domain by the corresponding polypeptide region of factor X. The chimeric protein, factor IX(Xegf2), and the wildtype, factor IXWt9 produced in embryonic kidney cells 293 were radiolabelled with 1251 and activated with factor XIa. Direct binding studies with thrombin-activated platelets showed normal stoichiometry and affinity of binding of factor IXawt in the presence of factor Vllla (2 units/ml) and factor X (1.5,uM). However, under similar experimental conditions, factor IXa(xegf2) was bound to a smaller number of sites (396 sites/platelet) with decreased affinity, i.e. a dissociation constant (Kd) of 1.4 nm, compared with normal factor IXa, factor IXaN (558 sites/platelet; Kd.67 nm), or factor IXa,t (59 sites/platelet; Kd.61 nm). The concentrations of factor IXaN and factor IXawt required for half-maximal rates of factor-x activation were.63 nm and.7 nm, indicating a close correspondence of the Kdapp for binding of factor IXawt to the factor-x activating complex on activated platelets to the Kd obtained in equilibrium binding studies. In contrast, kinetic parameters for factor-x activation by factor IXa(xegf2) showed a decreased affinity (Kd 1.5 nm), in agreement with results of binding studies. These studies with factor IX(Xegf2) suggest that the EGF-2 domain may be important for specific high-affinity factor IXa binding to platelets in the presence of factor Vllla and factor X. INTRODUCTION Factor IX is a member of a class of vitamin K-dependent bloodcoagulation proteins that share a common domain structure, consisting of an N-terminal domain containing y-carboxyglutamic acid (Gla) residues, linked to a short hydrophobic sequence, two epidermal growth factor (EGF)-like domains, an activation peptide sequence and a C-terminal serine protease domain [1]. In an effort to understand the structural features of factor IXa that are important for its binding to platelets and for the assembly of the factor-x activating complex on the platelet surface, we have recently carried out a series of investigations focused on the contributions of these molecular domains [2]. We have previously shown that the N-terminal EGF-1 domain does not contain amino acid sequences involved in platelet binding, since a chimeric factor IXa molecule in which the EGF-1 domain of factor X replaced that of factor IX was shown to bind with normal affinity and stoichiometry to the activated platelet surface [3]. In contrast, a major role for the Gla-containing domain in binding of factor IXa to the platelet surface has been demonstrated in our experiments with both Gla-modified and Gladomainless factor IXa molecules [4]. In support of this hypothesis is our recent demonstration that residues 3-11 at the N-terminus of the Gla domain forms a surface-exposed loop structure containing amino acid residues essential for high-affinity factor IXa binding to the platelet surface either in the presence or in the absence of factor VIIIa [5]. The present studies are focused on the possible contribution of the second EGF-like domain of factor IXa in the assembly of the factor-x activating complex on the platelet surface. To explore this possibility, we utilized recombinant factor IX molecules including a chimeric protein containing the amino acid sequence for factor X substituted for the second EGF-like domain. We have assumed that any amino acid sequences within the EGF-2 domain of factor IXa that are essential for binding to platelet receptors, to factor X, or to factor VIII should be revealed by deficient binding of the chimeric protein to the relevant protein or receptor. EXPERIMENTAL Materials The chromogenic substrate S2337 [Bz-Ile-Glu-(y-piperidyl)-Gly- Arg-p-nitroanilide] was purchased from AB Kabi Diagnostica (Stockholm, Sweden). p-aminobenzamidine was obtained from Sigma Chemical Co. (St. Louis, MO, U.S.A.). D-Phenylalanylprolyl-arginylchloromethane (PPACK) was purchased from Calbiochem-Behring Corp. (San Diego, CA, U.S.A.). All other reagents and chemicals used were the same as previously reported [6], and were obtained from Sigma Chemical Co., Aldrich Chemical Co. (Milwaukee, WI, U.S.A.), and Calbiochem- Behring Corp., and were of the highest grade commercially available. Proteins Human coagulation proteins, including factor IX, factor IXa, factor VIII, factor X and a-thrombin, were purified, assayed and characterized as previously published [6]. The conditions used for activation of factor VIII with human a-thrombin were identical with those previously published [6]. All proteins were Abbreviations used: Gla, y-carboxyglutamic acid; EGF, epidermal growth factor; PPACK, D-phenylalanyl-L-prolyl-L-arginylchloromethane. Il address: Biomedical Center, Box 575, Uppsala, Sweden. To whom correspondence should be addressed, at: The Sol Sherry Thrombosis Research Center, Temple University School of Medicine, 34 North Broad Street, Philadelphia, PA 1914, U.S.A.

2 428 S. S. Ahmad and others =.1 \ X f f Bound (pm) Figure 1 Scatchard analysis of specfic binding of I'll-factor IXa,, 151-factor IXaa,,, and I'l-factor IXa", to thrombin-stimulated normal human platelets In the absence (a) and the presence (b) of factor Vil and factor X Gel-filtered platelets (3.5 x 18/ml) were incubated at 37 C with mixtures of human cc-thrombin (.1 unit/ml) and factor X (1.5,M). Binding was determined as detailed in the Experimental section. Non-specific binding was determined in the presence of excess unlabelled factor IXa (.44 1sM; 25,ug/ml) and was subtracted from total binding to obtain specific binding. The results in (a) represent a Scatchard plot of specific binding data for factor IXaN in the absence () of factor Villa and factor X compared with specific binding data for either factor IXawt (A) or factor MXave, (EO) in the absence of factor Vllla and factor X. The results shown in (b) represent a Scatchard plot of specific binding data for factor IXaN in the presence (-) of factor VIII and factor X compared with specific binding data for either factor lxaw, (A) or factor IXa(x,f2) (*) in the presence of both thrombin-activated factor VIII and factor X. The plotted results represent mean values of three experiments with normal and chimeric factor IXa molecules, each done in duplicate. > 98 % pure as determined by polyacrylamide-slab-gel electrophoresis in SDS [7]. Protein concentrations were determined by the Bio-Rad dye-binding assay according to instructions provided by the manufacturer (Bio-Rad, Richmond, CA, U.S.A.). Chimeric factor IX molecules were obtained by replacing the EGF-2 coding sequence in the factor-ix cdna with the corresponding factor X EGF-domain coding sequence by sitedirected mutagenesis as reported previously [8]. The chimeric and wild-type proteins, expressed in human embryo kidney cells, were purified from cell supernatants, and analysis for Gla was carried out as reported previously [8,9]. The normal plasmaderived, the wild-type and the chimeric factor IX molecules were radiolabelled with 1251 by the lodogen method as previously described [6], and specific radioactivities of all proteins were in the range of(2.-2.5) x 16 c.p.m./mg. Activation of both normal and chimeric factor IX molecules by purified factor XIa was carried out as previously described [6]. We also utilized the p- aminobenzamidine fluorescence assay to examine quantitatively the activation of factor IXN and recombinant factor IX molecules as previously reported [8,1]. After gel electrophoresis, autoradiograms of normal and chimeric factor IXa were developed to provide structural characterization of 125I-labelled proteins. Both recombinant proteins, factor IXa(Xeg 2) and factor IXawt, migrated under reducing conditions as two polypeptide chains of Mr 27 and 17, representing the heavy and light chains, and were indistinguishable from plasma-derived factor IXaN (results not shown). Binding experiments In a typical binding experiment, gel-filtered platelets [(3-4) x 18/ml] in Ca2+-free Hepes Tyrode's buffer, ph 7.4, were incubated at 37 C in a 1.5 ml Eppendorf plastic centrifuge tube with mixtures of unlabelled and radiolabelled factor IXa, CaC12, platelet stimuli, and other proteins. Platelets were separated from unbound proteins as previously described [6]. The data were analysed, and the number of binding sites and Kd were calculated from the means of three independent determinations, each done in duplicate, as previously described [6] by using a Macintosh Quadra 9 Computer (Apple Computer, Cupertino, CA, U.S.A.) and the LIGAND program as modified by G. A. McPherson (Elsevier Science Publishers BV, The Netherlands, 1985). Measurements of rates of factor Xa formation The activation of factor X by normal and variant factor IXa was carried out at 37 C in the presence of thrombin-stimulated gelfiltered platelets, factor Vllla and CaCl2 as described previously [11,12]. The details of experimental conditions and concentrations of reactants are given in the Results section and in the Figure legends. Calculations of kinetic constants The derivation of kinetic constants of factor-x activation by factor IXa was based on a one-enzyme one-substrate model. The Michaelis constant (K.) and the maximum velocity (Vmax ) were calculated from the mean + S.E.M. of three independent determinations each done in duplicate, of factor-x activation rates at variable factor X concentrations as described previously [12]. Values of Kd were obtained from experiments in which rates of factor-x activation were determined at variable factor IXa concentration as previously described [11]. The values of turnover numbers (kcat.) were calculated by dividing Vmax. values by the amount of enzyme (factor IXa) bound under the conditions of the experiment. This latter value was obtained from the equation: Amount bound = Bmax.E/(Kd + E)

3 Second epidermal-growth-factor domain in factor IXa binding to platelets 429 Table 1 Binding constants for normal and chimeric factor IXa molecules and for Scott-syndrome platelets Data are shown for Scott-syndrome platelets [13] for comparison. Kd (nm) No. of sites/platelet Platelets Ligand Factor VIII (±S.E.M.) Equilibrium Kinetic Scott-syndrome lxa(xef) Factor Factor MXa() E x me a- r- m O' Concn. of competing protein (nm) -r 8 E E 6 2 Cu X 4 co U Factor IXa (nm) Figure 3 Rates of factor Xa formation by normal and chimeric factor IXa Figure 2 Competition by unlabelled factor IXa, factor IXa,xm and factor molecules In the presence of thrombin-activated platelets and factor Villa lxa, for I'1l-labelled factor IXa binding sites on thrombin-activated platelets Inthe presence of factor VIII and factor X wtrh riatormintatlin tho nrc fnctpnrf thrnmhiursc ncntrations n.tppt n1m ot a7 tor in WUMe UMlUMMillU 111 t[lu P16MAtUC Ul D X 1u- t[iiuuliuil-dailvdlbu,iduldulckllill at '31 u III a Gel-filtered platelets (3.8 x 18/ml) were incubated for 2 min at 37 C with human a-thrombin (.1 unit/ml), CaCI2 (5 mm), 1251-labelled factor IXaN (3.3 nm), and various concentrations of unlabelled factor IXaN (@), factor IXa(xef2) (U) or factor IXaw, (A), in the presence of thrombin-activated factor Vil (5 units/ml) and factor X (.15,uM). Binding was determined as described in the Experimental section. Maximum binding (1%) was determined by subtracting the non-specific binding, i.e. the binding determined in the presence of excess unlabelled factor IXaN, factor IXa(X,f2) or factor IXawt from total binding. The results shown represent residual factor IXa binding in the presence of factor VIII and factor X. The results presented are means+s.e.m. of three separate experiments, each done in triplicate. where Bmax is the maximum amount of factor IXa bound or the total receptor concentration, E is total factor IXa concentration, and Kd is the dissociation constant. The details of this calculation are provided in previous papers [11,13]. RESULTS Specific binding of 1251-labelled factor IXaN, factor lxa, and factor lxa(x,f2) to thrombin-activated normal human platelets To study the structural requirements for factor IXa binding to platelets, equilibrium binding studies were carried out in the presence of saturating concentrations of factor X and thrombinactivated factor VIII, with the chimeric protein or with wild-type recombinant or plasma-derived factor IXa molecules. The chimeric factor IX molecule consisted of the Gla domain, the EGF-1 domain, the activation peptide and the catalytic domain reaction volume of 1,1 containing 5 mm Tris (ph 7.9), 175 mm NaCI, 5 mm CaCI2, 1.5,sM factor X, 5 units/ml factor Vllla and.5 mg/ml human serum albumin. Platelets were stimulated with.1 unit/ml thrombin in the presence of CaCI2 (5 mm), and factor IXa was preincubated with platelets for 1 min at 37 C. Excess thrombin was neutralized with 5 nm PPACK before addition of factor Vllla and performance of the assay. The plotted results for factor ixan () are shown, compared with factor lxawt (A) and factor IXa(xegt2) (U). These observations are means+s.e.m. of duplicate observations from three separate experiments. of factor IX with the second EGF-like domain of factor X, factor The wild-type and the chimeric factor IX molecules IXa(xegf2). were fully carboxylated, with 1.1 mol of Gla/mol of factor IXa(xegf2), 1.4 mol of Gla/mol for factor IXW,, and 1.5 mol of Gla/mol for factor IXaN. The factor IXa molecules, after activation by factor XIa, were shown to be fully active by activesite titration with p-aminobenzamidine when compared with plasma-derived factor IXa, and both consisted of completely activated factor IXa, as shown by SDS/PAGE under reducing conditions (results not shown). Scatchard analysis of the binding data (Figure 1) gave straight lines, indicating the presence of a single class of binding sites for both the normal and chimeric factor IXa molecules. The affinity and stoichiometry of binding for these ligands under both experimental conditions were determined in six separate experiments, the means ( ± S.E.M.) of which are given in Table 1. Similar studies were carried out with factor IXawt and the results are recorded in Table 1. In the absence of factor Vllla and factor X there were

4 43 S. S. Ahmad and others Figure 4.E 15 E '1 x 5 IL Factor X (nm) Factor X activation by factor IXa,, factor IXa,, and factor IXaa,,, Initial rates of factor X activation were determined as described in the Experimental section at various concentrations of factor X as indicated in the graph. The experiment was carried out essentially as described in the legend to Figure 3, except that factor X concentration was varied and the concentration of factor IXaN, factor IXat and factor lxa(xw) was 1 pm. The plotted results for factor IXaN (@), factor IXaw, (A) and factor IXa(xegf2) (X) are the means+ S.E.M. of duplicate observations from five separate experiments. sites/platelet (Kd nm) for factor IXa(xegfta, compared with sites/platelet (Kd nm) for factor IXaN, and sites/platelet (Kd nm) for factor IXawt. The presence of factor Vllla and factor X, both at saturating concentrations, had no effect on the number of binding sites for factor IXaN or recombinant factor IXawt, and resulted in a decrease in the Kd for these proteins to.67 nm and.61 nm respectively. In contrast, under similar experimental conditions, factor IXa(xeg,2) was bound to a smaller number (P <.5) of sites ( sites/platelet), with a sub-optimal decrease in affinity (Kd = nm). Competftlon studies with factor IXaN, factor IXat and factor 1Xa(X" We carried out competition studies with unlabelled factor IXaN, factor IXawt and factor IXa(xegf2) by incubating thrombinstimulated platelets in the presence of CaCl2 for 2 min at 37 C with 1251I-labelled factor IXa and various concentrations of unlabelled proteins in the presence of factor X and thrombinactivated factor VIII. When the residual binding of 12m1-labelled factor IXa was determined (Figure 2), it was apparent that excess factor IXaN9 factor IXawt and factor IXa(Xegf2) all prevented > 95% of 125I-labelled factor IXa binding. From the results presented in Figure 2, it is estimated that the concentrations of factor IXaN, factor IXawt and factor IXa(xeV2) required for halfmaximal inhibition of factor IXa binding in the presence of factor VIIIa and factor X were.5 nm,.65 nm and 1.9 nm respectively. Kinetic studies of normal and recombinant factor IXa molecules In this study we also determined the apparent K4 for normal and recombinant factor IXa binding to platelets by kinetic studies of factor-xa formation in the presence of saturating concentrations of factor X and factor VIIIa (Figure 3). The Kd values obtained are presented in Table 1. The use of this kinetic approach for the determination of binding affinity is justified in our previous studies [1 1,13]. The apparent Kd values obtained for factor IXa" ( nm), factor IXa(xegf2) ( nm) and factor IXawt ( nm) respectively (Figure 3 and Table 1) similar to those obtained from the equilibrium binding studies (Table 1). The kinetic parameters for factor-x activation by normal and recombinant factor IXa molecules were determined in the presence of thrombin-stimulated platelets and factor VIlla (Figure 4). Studies were carried out at a factor IXa concentration of.1 nm, well below the apparent Kd for binding of factor IXa to platelets. The values of K., Vnax., kcat. and kcat./km for normal, wild-type and chimeric proteins, obtained at saturating concentrations of factor VIIIa, are summarized in Table 2. From the results it is apparent that Km values for factor IXa(xegf2) are entirely normal. Similarly, Vmax values for factor IXa", normal compared with factor IXaN (i.e., plasma-derived factor were were about IXa). In contrast, Vmax values for factor IXa(xegf2) 25 % of normal. However, turnover numbers were calculated from values of Vm.. and amounts of factor IXa bound to thrombin-activated platelets and expressed as mol of factor Xa formed/min per mol of total platelet-bound factor IXa. The details of this calculation and its justification are provided in the Experimental seetion and in previous publications [11,13]. It is clear from this analysis that the values for kcat and kcat /Km for factor IXa(Xegf2) are entirely normal (Table 2). This indicates that the decreased rates of factor-x activation (i.e. the Vma. values) observed with factor IXa(xegf2) are solely a consequence of the decreased affinity of these molecules for platelet binding sites in the presence of factor VIIIa and factor X. are DISCUSSION The purpose of the studies reported here was to examine the possible contributions of the second EGF-like domain of factor IX in the binding of factor IXa to activated human platelets and in the assembly of the factor-x activating complex on the platelet membrane. To accomplish this goal we utilized a recombinant chimeric factor IX molecule in which amino acid sequences for factor X were substituted for the second EGF-like domain [8]. The assumption underlying this experimental approach is that the three-dimensional structure of the chimeric protein should be similar to the native factor IX molecule, whereas the cofactor and substrate specificity should be dependent on specific amino acid residues exposed on the surface of the protein. There is Table 2 Factor X activation by normal, wild-type and chimeric factor IXa molecules: kinetic analysis kct. is expressed as mol of factor Xa formed/min per mol of total platelet-bound factor lxa. Data are shown for Scott-syndrome platelets [13] for comparison. Km V, kmt kit/km - Platelets Enzyme (AM) (nm min-) (min-') (A -1 - min-r) Scott-syndrome Factor Factor lxa(,) lxa(x,e)

5 Second epidermal-growth-factor domain in factor IXa binding to platelets 431 considerable support for this assumption, since the crystal structures of evolutionarily related proteins with conserved amino acid sequences have been shown to be similar [14,15] and the backbone structures of many serine proteases are nearly identical with sequence differences residing mainly in surface structures that mediate ligand interactions [16-18]. Therefore, we reasoned that any amino acid sequences within the EGF-2 domain of factor IX that are essential for binding to platelet receptors should be revealed by deficient binding of the chimeric protein. The results of our previous studies with factor IXa(xegfl) in which the first EGF-like domain of factor X replaced that of factor IXa, revealed entirely normal binding of the chimeric protein to thrombin-activated platelets in either the absence or the presence of factor VIlla and entirely normal kinetics of factor-x activation [3]. This result suggests either that the EGF- 1 domain of factor IX does not contain a platelet binding site, or that the EGF-l domain of factor X, when inserted into the factor IX molecule, suffices to support the assembly of factor IXa into the factor-x activating complex. The present results with factor IX(Xegf2), in which the second EGF-like domain of factor X replaced that of factor IXa, revealed abnormal binding of the chimeric protein to thrombinactivated platelets. Several interesting abnormalities were observed. First, the number of factor IXa binding sites was significantly decreased (P <.5) compared with normal or wild-type factor IXa. Second, although the affinity of binding was normal in the absence of factor Vllla (Kd = 3.11 nm; Table 1), the presence of factor VIIla had a sub-optimal effect on binding affinity (Kd = nm, compared with nm for wild-type or normal factor IXa; Table 1). Therefore, it would appear that the EGF-2 domain is essential for normal, highaffinity, factor IXa binding to activated platelets in the presence of factor Vllla and factor X. Third, the kinetic studies reported in Table 2 demonstrate that, although both chimeric and wildtype factor IXa molecules bind with normal Km to factor X, the V.,X of factor-x activation observed for factor IXa(xegf2) is only 25 % of normal, compared with 1% for factor IXa(xegfl) [3]. However, since the kcat and kcat IKm for factor IXa(xegf2) are entirely normal (when kcat is expressed as mol of factor Xa formed/min per mol of platelet-bound factor IXa), the decreased rates of factor-x activation can be attributed entirely to the decreased amount and affinity of factor IXa bound to platelets in the presence of factor Vllla. All these results taken together are consistent with the interpretation that the EGF-2 domain of factor IXa is required for binding of factor IXa to a normal number of receptors exposed on activated platelets in the absence of factors VIIIa and X, and additionally is essential for the highaffinity (Kd.5 nm), factor-ixa binding and - consequent factor-x activation observed in the presence of factor VIIIa. Based on these findings, we suggest that the EGF-2 domain of factor IXa contains an accessory binding site that recognizes a platelet receptor in addition to the platelet receptor with which residues 3-11 in the Gla domain interact [5]. The presence of factor Vllla failed to induce in factor IXa(xegf2) the high-affinity (Kd.5 nm) binding observed with factor IXaN or factor IXawt, although the kcat of the bound enzyme was entirely normal (Table 2), suggesting that, although the interaction of factor VIlla with factor IXa(Xegf1) was normal [3], the enhanced affinity of factor IXa binding through the putative EGF-2- domain accessory binding site was deficient. Platelets in Scott syndrome are defective in their ability to convert factor X into Xa, which is due to the defect in mechanisms by which phosphatidylserine becomes exposed at the outer surface of stimulated platelets [19] and microvesicles [2]. Our results with the factor IXa(Xegf 2) chimera are strikingly similar to those observed previously with Scott-syndrome platelets [13], in which a bleeding disorder due to an isolated deficiency of platelet procoagulant activity was shown to be associated with a decreased number of factor IXa receptors in the absence or presence of factor Vllla and a deficient enhancement of factor IXa binding affinity in the presence of factor Vllla. The relevant binding and kinetic parameters are shown for Scott syndrome platelets in Tables 1 and 2. Taken together, these results are consistent with, although not proof of, the hypothesis that the EGF-2 domain contains a binding site that interacts with a platelet receptor that is deficient or absent in Scott-syndrome [13]. The enhanced high-affinity binding of factor IXa normally induced by the binding of factor Vllla to factor IXa and to activated platelets [6] may be deficient both with factor IXa(xegf 2) and with Scott-syndrome platelets, because factor VIlla promotes high-affinity factor IXa binding through the putative EGF-2 platelet (Scott) receptor interaction. This study was supported by research grants to P.N.W. from the National Institutes of Health (HL36579, HL46213, HL45486 and HL25661) and from the W. W. Smith Charitable Trust, to S.S.A. from The Council For Tobacco Research (Grant 319), and to D.W.S. from the National Institutes of Health (HL38973). We are grateful to Frances S. Seaman and Stephanie Zhang for technical assistance and to Patricia Pileggi for her assistance in manuscript preparation. REFERENCES 1 Hedner, U. and Davie, E. W. (1987) Hemostasis and Thrombosis: Basic Principles and Clinical Practice, 2nd edn., pp , Lippincott, Philadelphia 2 Ahmad, S. S., Rawala-Sheikh, R. and Walsh, P. N. (1992) Semin. Thromb. Hemostasis 18, Ahmad, S. S., Rawala-Sheikh, R., Cheung, W-F., Stafford, D. W. and Walsh, P. N. (1992) J. Biol. Chem. 267, Rawala-Sheikh, R., Ahmad, S. S., Monroe, D. M., Roberts, H. R. and Walsh, P. N. (1992) Blood 79, Ahmad, S. S., Rawala-Sheikh, R., Cheung, W.-F., Stafford, D. W. and Walsh, P. N. (1994) Biochemistry 33, Ahmad, S. S., Rawala-Sheikh, R. and Walsh, P. N. (1989) J. Biol. Chem. 264, Ahmad, S. S., Rawala-Sheikh, R., Monroe, D. M., Roberts, H. R. and Walsh, P. N. (199) J. Biol. Chem. 265, Lin, S.-W., Smith, K. J., Welsch, D. and Stafford, D. W. (199) J. Biol. Chem. 265, Cheung, W.-F., Straight, D. L., Smith, K. J., Lin, S.-W., Roberts, H. R. and Stafford, D. W. (1991) J. Biol. Chem. 266, Monroe, D. M., Sherrill, G. B. and Roberts, H. R. (1988) Anal. Biochem. 172, Ahmad, S. S., Rawala-Sheikh, R. and Walsh, P. N. (1989) J. Biol. Chem. 264, Rawala-Sheikh, R., Ahmad, S. S., Ashby, B. and Walsh, P. N. (199) Biochemistry 29, Ahmad, S. S., Rawala-Sheikh, R., Ashby, B. and Walsh, P. N. (1989) J. Clin. Invest. 84, Barker, W. C. and Dayhoff, M.. (1976) Atlas of Protein Sequences and Structure, vol. 5, pp , National Biomedical Research Foundation, Silver Spring, MD 15 Craik, C. S., Rutter, W. J. and Fletterick, R. (1983) Science 22, Rogers, J. (1985) Nature (London) 315, Fersht, A. (1985) in Enzyme Structure and Mechanism (Fersht, A., ed.), pp , W. H. Freeman and Co., New York 18 Olsson, G., Lindqvist,., Peterson, T. E., Magnusson, S. and Sottrup-Jenson, L. (198) in Vitamin K Metabolism and Vitamin K Dependent Proteins (Suttie, J. W., ed.), pp. 8-12, University Park Press, Baltimore 19 Rosing, J., Bevers, E. M., Comfurius, P., Hemker, H. C., Dieijen, V., Weiss, H. J. and Zwaal, R. F. A. (1985) Blood 65, Sims, P. J., Faioni, E. M., Wiedmer, T. and Shattil, S. J. (1988) J. Biol. Chem. 263, Received 17 January 1995/6 April 1995; accepted 24 April 1995

Suppl. Materials and methods

Suppl. Materials and methods Suppl. Materials and methods Amino acid sequences of recombinant Fc-fusion forms of the EGF1,2, EGF1, and EGF2 of FIX and FX Recombinant Fc-fusion form of the first and second epidermal growth factor (EGF)-like

More information

CHROMOGENIC SUBSTRATE TECHNOLOGY. Giovanni Russi

CHROMOGENIC SUBSTRATE TECHNOLOGY. Giovanni Russi CHROMOGENIC SUBSTRATE TECHNOLOGY Giovanni Russi What is a chromogenic substrate? A peptide linked to a chromophore The peptide is formed by 3-5 residues The chromophore is p-nitroaniline (p-na) The residues

More information

SUPPLEMENTARY MATERIAL

SUPPLEMENTARY MATERIAL SUPPLEMENTARY MATERIAL Purification and biochemical characterization of acid phosphatase-i from seeds of Nelumbo nucifera Sanaullah Khan a*, Shahnaz Asmat c, Sajida Batool a, Mushtaq Ahmed b a Department

More information

Protein analysis. Dr. Mamoun Ahram Summer semester, Resources This lecture Campbell and Farrell s Biochemistry, Chapters 5

Protein analysis. Dr. Mamoun Ahram Summer semester, Resources This lecture Campbell and Farrell s Biochemistry, Chapters 5 Protein analysis Dr. Mamoun Ahram Summer semester, 2015-2016 Resources This lecture Campbell and Farrell s Biochemistry, Chapters 5 Bases of protein separation Proteins can be purified on the basis Solubility

More information

BC 367, Exam 2 November 13, Part I. Multiple Choice (3 pts each)- Please circle the single best answer.

BC 367, Exam 2 November 13, Part I. Multiple Choice (3 pts each)- Please circle the single best answer. Name BC 367, Exam 2 November 13, 2008 Part I. Multiple Choice (3 pts each)- Please circle the single best answer. 1. The enzyme pyruvate dehydrogenase catalyzes the following reaction. What kind of enzyme

More information

Enzyme kinetics. Irreversible inhibition inhibitor is bound tightly to enzyme - very slow dissociation can be covalent or non covalently bound

Enzyme kinetics. Irreversible inhibition inhibitor is bound tightly to enzyme - very slow dissociation can be covalent or non covalently bound Enzymes can be regulated by acceleration and inhibition inhibition very common - several different mechanisms competitive / non competitive reversible / irreversible Irreversible inhibition inhibitor is

More information

the heparin-catalyzed heparin cofactor II/thrombin reaction has not been reported. The purpose of the present study was to evaluate the kinetics

the heparin-catalyzed heparin cofactor II/thrombin reaction has not been reported. The purpose of the present study was to evaluate the kinetics Proc. Natl. Acad. Sci. USA Vol. 80, pp. 5460-5464, September 1983 Biochemistry Heparin-catalyzed inhibitor/protease reactions: Kinetic evidence for a common mechanism of action of heparin (antithrombin

More information

Masayoshi Honda, Jeehae Park, Robert A. Pugh, Taekjip Ha, and Maria Spies

Masayoshi Honda, Jeehae Park, Robert A. Pugh, Taekjip Ha, and Maria Spies Molecular Cell, Volume 35 Supplemental Data Single-Molecule Analysis Reveals Differential Effect of ssdna-binding Proteins on DNA Translocation by XPD Helicase Masayoshi Honda, Jeehae Park, Robert A. Pugh,

More information

INVESTIGATION OF THE INTERACTION BETWEEN NAPROXEN AND HUMAN SERUM ALBUMIN

INVESTIGATION OF THE INTERACTION BETWEEN NAPROXEN AND HUMAN SERUM ALBUMIN INVESTIGATION OF THE INTERACTION BETWEEN NAPROXEN AND HUMAN SERUM ALBUMIN A. PÎRNĂU, M. BOGDAN National R&D Institute for Isotopic and Molecular Technologies, 71 103 Donath str., 400293Cluj-Napoca, Romania

More information

Effect of Fibrinogen and Ca2+ on the Thrombin-Catalyzed Proteolytic Event That Triggers Activation of Factor XI11

Effect of Fibrinogen and Ca2+ on the Thrombin-Catalyzed Proteolytic Event That Triggers Activation of Factor XI11 Effect of Fibrinogen and Ca2+ on the Thrombin-Catalyzed Proteolytic Event That Triggers Activation of Factor XI11 JULES A. SHAFER,' SIDNEY D. LEWIS," TODD J. JAN US,^ AND LASZLO LOR AND^ 'Department of

More information

The microtubule-associated tau protein has intrinsic acetyltransferase activity. Todd J. Cohen, Dave Friedmann, Andrew W. Hwang, Ronen Marmorstein and

The microtubule-associated tau protein has intrinsic acetyltransferase activity. Todd J. Cohen, Dave Friedmann, Andrew W. Hwang, Ronen Marmorstein and SUPPLEMENTARY INFORMATION: The microtubule-associated tau protein has intrinsic acetyltransferase activity Todd J. Cohen, Dave Friedmann, Andrew W. Hwang, Ronen Marmorstein and Virginia M.Y. Lee Cohen

More information

DEFICIENCY AND THE SPARING NORDIHYDROGUAIARETIC NEUROSPORA CRASSA

DEFICIENCY AND THE SPARING NORDIHYDROGUAIARETIC NEUROSPORA CRASSA J. Gen. App!. Microbiol., 25, 323-327 (1979) BIOTIN OF DEFICIENCY AND THE SPARING NORDIHYDROGUAIARETIC ACID NEUROSPORA CRASSA EFFECT IN KENNETH D. MUNKRES Laboratories of Molecular Biology and Genetics,

More information

ANTITHROMBIN FACTOR Xa

ANTITHROMBIN FACTOR Xa 2014 ATITRMBI FACTR Xa The Coamatic Antithrombin kits are simple, accurate and convenient. All methods are based on inhibition. Allows accurate determination of antithrombin in patients receiving heparin

More information

Question 2 (15 points)

Question 2 (15 points) Question 2 (15 points) Your undergraduate TAs were not very successful at performing the Protein Biochemistry experiments during Run-Through Week. Describe how the following mistakes would affect the purification

More information

Quantifying small numbers of antibodies with a near-universal protein-dna chimera

Quantifying small numbers of antibodies with a near-universal protein-dna chimera Quantifying small numbers of antibodies with a near-universal protein-dna chimera Ian Burbulis, Kumiko Yamaguchi, Richard Yu, Orna Resnekov & Roger Brent Supplementary figures and text: Supplementary figure

More information

6 Enzymes II W. H. Freeman and Company

6 Enzymes II W. H. Freeman and Company 6 Enzymes II 2017 W. H. Freeman and Company The role of an enzyme in an enzyme-catalyzed reaction is to: A. bind a transition state intermediate, such that it cannot be converted back to substrate. B.

More information

Marilyn Johnston Hemostasis Reference Laboratory Hamilton,Ontario

Marilyn Johnston Hemostasis Reference Laboratory Hamilton,Ontario Marilyn Johnston Hemostasis Reference Laboratory Hamilton,Ontario None Discovered in 1916 Named from the Latin word for liver, hepar 1939, heparin requires a plasma cofactor First used in humans in 1940

More information

This Technical Note describes these characterization studies in more detail.

This Technical Note describes these characterization studies in more detail. Technical Note Characterization of SOMAmer Reagents Binding Specificity in the SOMAscan 1.3k Assay Summary Slow Off-Rate Modified Aptamer (SOMAmer) reagents are identified via the SELEX process against

More information

Lab Module 2 -- ENZYME FUNCTION BIOL116L Spring 2008

Lab Module 2 -- ENZYME FUNCTION BIOL116L Spring 2008 Lab Module 2 -- ENZYME FUNCTION BIOL116L Spring 2008 (Note to students: this Module covers two weeks, starting the week of Feb. 18) Introduction Life depends on many biochemical reactions. Nearly all of

More information

Discovery and Humanization of Novel High Affinity Neutralizing Monoclonal Antibodies to Human IL-17A

Discovery and Humanization of Novel High Affinity Neutralizing Monoclonal Antibodies to Human IL-17A Discovery and Humanization of Novel High Affinity Neutralizing Monoclonal Antibodies to Human IL-17A Contacts: Marty Simonetti martysimonetti@gmail.com Kirby Alton kirby.alton@abeomecorp.com Rick Shimkets

More information

Dr. Jeffrey P. Thompson bio350

Dr. Jeffrey P. Thompson bio350 Chapter 8 Enzymes Green light GFP Blue light Modern day catalysis Catalysis (reaction promotion) may have gotten its beginning g in an RNA- dominated world. Most catalysis today has evolved into using

More information

Human Factor XIII ELISA Kit

Human Factor XIII ELISA Kit Human Factor XIII ELISA Kit Catalog No: IRAPKT054 Lot No: SAMPLE INTRODUCTION Factor XIII is a proenzyme for a plasma transglutaminase previously known as fibrin stabilizing factor. Intracellular FXIII

More information

Conformation of the Mineralocorticoid Receptor N- terminal Domain: Evidence for Induced and Stable Structure

Conformation of the Mineralocorticoid Receptor N- terminal Domain: Evidence for Induced and Stable Structure ME-10-0005 Conformation of the Mineralocorticoid Receptor N- terminal Domain: Evidence for Induced and Stable Structure Katharina Fischer 1, Sharon M. Kelly 2, Kate Watt 1, Nicholas C. Price 2 and Iain

More information

ab Factor IXa Activity Assay Kit (Fluorometric)

ab Factor IXa Activity Assay Kit (Fluorometric) ab204727 Factor IXa Activity Assay Kit (Fluorometric) Instructions for Use For rapid, sensitive and accurate detection of Factor IXa activity. This product is for research use only and is not intended

More information

Case 7 A Storage Protein From Seeds of Brassica nigra is a Serine Protease Inhibitor Last modified 29 September 2005

Case 7 A Storage Protein From Seeds of Brassica nigra is a Serine Protease Inhibitor Last modified 29 September 2005 Case 7 A Storage Protein From Seeds of Brassica nigra is a Serine Protease Inhibitor Last modified 9 September 005 Focus concept Purification of a novel seed storage protein allows sequence analysis and

More information

These handouts are only meant as a guide while you follow the presentation on the screen. Sometimes the speaker will change some of the slides.

These handouts are only meant as a guide while you follow the presentation on the screen. Sometimes the speaker will change some of the slides. These handouts are only meant as a guide while you follow the presentation on the screen. Sometimes the speaker will change some of the slides. If you would like the 1 slide per page handouts, please ask

More information

Comparison of the kinetics of cycling of the transferrin receptor in the presence or absence of bound diferric transferrin

Comparison of the kinetics of cycling of the transferrin receptor in the presence or absence of bound diferric transferrin University of Massachusetts Medical School escholarship@umms Open Access Articles Open Access Publications by UMMS Authors 11-15-1989 Comparison of the kinetics of cycling of the transferrin receptor in

More information

Store samples to be assayed within 24 hours at 2-8 C. For long-term storage, aliquot and freeze samples at -20 C. Avoid repeated freeze-thaw cycles.

Store samples to be assayed within 24 hours at 2-8 C. For long-term storage, aliquot and freeze samples at -20 C. Avoid repeated freeze-thaw cycles. Human Retinol Binding Protein 4, RBP4 ELISA Kit Preparation Plate Washing Discard the solution in the plate without touching the side walls. Blot the plate onto paper towels or other absorbent material.

More information

ALP (alkaline phosphatase) calibrators were analyzed manually in microtiter plates to find the linearity range by following this protocol:

ALP (alkaline phosphatase) calibrators were analyzed manually in microtiter plates to find the linearity range by following this protocol: Exam Mol 3008 May 2009 Subject 1 (15p) ALP (alkaline phosphatase) calibrators were analyzed manually in microtiter plates to find the linearity range by following this protocol: Reaction solutions: 50

More information

Study Small Molecule-Membrane Protein Binding Kinetics with. Nanodisc and Charge Sensitive Optical Detection

Study Small Molecule-Membrane Protein Binding Kinetics with. Nanodisc and Charge Sensitive Optical Detection Support Information Study Small Molecule-Membrane Protein Binding Kinetics with Nanodisc and Charge Sensitive Optical Detection Guangzhong Ma 1,2, Yan Guan 1,3, Shaopeng Wang 1*, Han Xu 4*, Nongjian Tao

More information

Supplementary Figure 1. Antibody-induced cargo release studied by native PAGE. A clear band corresponding to the cargo strand (lane 1) is visible.

Supplementary Figure 1. Antibody-induced cargo release studied by native PAGE. A clear band corresponding to the cargo strand (lane 1) is visible. Supplementary Figure 1. Antibody-induced cargo release studied by native PAGE. A clear band corresponding to the cargo strand (lane 1) is visible. Because SYBR Gold is less sensitive to single stranded

More information

Human Serum Albumin (HSA) ELISA Quantitation Kit. Manual

Human Serum Albumin (HSA) ELISA Quantitation Kit. Manual Human Serum Albumin (HSA) ELISA Quantitation Kit Manual Catalog number: 40-288-10067F For the quantitative determination of human serum albumin levels in plasma or other biological samples. This kit is

More information

Enzymes and Coenzymes I. Dr. Sumbul Fatma Clinical Chemistry Unit Department of Pathology

Enzymes and Coenzymes I. Dr. Sumbul Fatma Clinical Chemistry Unit Department of Pathology Enzymes and Coenzymes I Dr. Sumbul Fatma Clinical Chemistry Unit Department of Pathology What are Enzymes? Enzymes are biological catalysts that speed up the rate of a reaction without being changed in

More information

Lecture 22: Questions from Quiz 2 and the Trypsin Digestion Experiment

Lecture 22: Questions from Quiz 2 and the Trypsin Digestion Experiment Biological Chemistry Laboratory Biology 3515/Chemistry 3515 Spring 2018 Lecture 22: Questions from Quiz 2 and the Trypsin Digestion Experiment 29 March 2018 c David P. Goldenberg University of Utah goldenberg@biology.utah.edu

More information

Purification: Step 1. Lecture 11 Protein and Peptide Chemistry. Cells: Break them open! Crude Extract

Purification: Step 1. Lecture 11 Protein and Peptide Chemistry. Cells: Break them open! Crude Extract Purification: Step 1 Lecture 11 Protein and Peptide Chemistry Cells: Break them open! Crude Extract Total contents of cell Margaret A. Daugherty Fall 2003 Big Problem: Crude extract is not the natural

More information

Purification: Step 1. Protein and Peptide Chemistry. Lecture 11. Big Problem: Crude extract is not the natural environment. Cells: Break them open!

Purification: Step 1. Protein and Peptide Chemistry. Lecture 11. Big Problem: Crude extract is not the natural environment. Cells: Break them open! Lecture 11 Protein and Peptide Chemistry Margaret A. Daugherty Fall 2003 Purification: Step 1 Cells: Break them open! Crude Extract Total contents of cell Big Problem: Crude extract is not the natural

More information

F11 (Human) ELISA Kit

F11 (Human) ELISA Kit F11 (Human) ELISA Kit Catalog Number KA1400 96 assays Version: 04 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Background... 3 Principle of the Assay... 3 General Information...

More information

SensoLyte 490 MMP-1 Assay Kit *Fluorimetric*

SensoLyte 490 MMP-1 Assay Kit *Fluorimetric* SensoLyte 490 MMP-1 Assay Kit *Fluorimetric* Revision# 1.2 Last updated: February 2017 Catalog # Kit Size AS-71128 500 Assays (96-well plate) or 1250 assays (384-well) Convenient Format: All essential

More information

Mouse Factor X Total Antigen ELISA Kit

Mouse Factor X Total Antigen ELISA Kit Mouse Factor X Total Antigen ELISA Kit CATALOG NO: IMFXKT-TOT LOT NO: SAMPLE INTENDED USE This mouse Factor X total assay is for the quantitative determination of total Factor X and Xa in biological fluids.

More information

2. Relay characteristics of proteins and protein electrophoresis / fractionation.

2. Relay characteristics of proteins and protein electrophoresis / fractionation. UNIT: Proteins 15prot_elec.wpd Task Electrophoresis Objectives Upon completion of this exercise, the student will be able to: 1. Review electrophoresis information as presented in class. 2. Relay characteristics

More information

SensoLyte 490 MMP-3 Assay Kit *Fluorimetric*

SensoLyte 490 MMP-3 Assay Kit *Fluorimetric* SensoLyte 490 MMP-3 Assay Kit *Fluorimetric* Revision Number:1.1 Last Revised: October 2014 Catalog # Kit Size AS-71130 500 assays (96-well) Convenient Format: All essential assay components are included.

More information

Case 7 A Storage Protein From Seeds of Brassica nigra is a Serine Protease Inhibitor

Case 7 A Storage Protein From Seeds of Brassica nigra is a Serine Protease Inhibitor Case 7 A Storage Protein From Seeds of Brassica nigra is a Serine Protease Inhibitor Focus concept Purification of a novel seed storage protein allows sequence analysis and determination of the protein

More information

MST Starting Guide Monolith NT.115

MST Starting Guide Monolith NT.115 MST Starting Guide Monolith NT.115 Contents 1. How to design an experiment 2. Before you start 3. Assay Setup Pretests 4. Assay Setup 5. MST-experiment using temperature control 6. Data Interpretation

More information

The University of Jordan Accreditation & Quality Assurance Center Course Syllabus Course Name:

The University of Jordan Accreditation & Quality Assurance Center Course Syllabus Course Name: The University of Jordan Accreditation & Quality Assurance Center Course Syllabus Course Name: 1 Course title Introductory Biochemistry for Medical Students 2 Course number 0501112 3 Credit hours (theory,

More information

D-3-Phosphoglycerate Dehydrogenase* Gregory A. Grant, Zhiqin Hu, and Xiao Lan Xu

D-3-Phosphoglycerate Dehydrogenase* Gregory A. Grant, Zhiqin Hu, and Xiao Lan Xu THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 276, No. 2, Issue of January 12, pp. 1078 1083, 2001 2001 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Specific Interactions

More information

UV Fluorescence Polarization as a Means to Investigate Protein Conformational and Mass Change

UV Fluorescence Polarization as a Means to Investigate Protein Conformational and Mass Change A p p l i c a t i o n N o t e UV Fluorescence Polarization as a Means to Investigate Protein Conformational and Mass Change Using Intrinsic Tryptophan Fluorescence in Conjunction with UV-capable Polarizers

More information

A sensitive direct human telomerase activity assay Scott B Cohen & Roger R Reddel

A sensitive direct human telomerase activity assay Scott B Cohen & Roger R Reddel A sensitive direct human telomerase activity assay Scott B Cohen & Roger R Reddel Supplementary figure and text: Supplementary Figure 1 Titration of the sheep polyclonal htert antibody. Supplementary Methods

More information

Lecture 8: Affinity Chromatography-III

Lecture 8: Affinity Chromatography-III Lecture 8: Affinity Chromatography-III Key words: Chromatography; Affinity chromatography; Protein Purification During this lecture, we shall be studying few more examples of affinity chromatography. The

More information

Mechanism Of Action Study

Mechanism Of Action Study Mechanism Of Action Study Sample Project Study Report Task Order: #DEMO Applicable to all LabChip assays, including: Protein kinases Lipid kinases Phosphatases Proteases Phosphodiesterases (PDEs) HistoneDeACetylases

More information

SensoLyte 490 MMP-9 Assay Kit *Fluorimetric*

SensoLyte 490 MMP-9 Assay Kit *Fluorimetric* SensoLyte 490 MMP-9 Assay Kit *Fluorimetric* Revision#1.2 Last updated: February 2017 Catalog # Kit Size AS-71134 500 assays (96-well) or 1250 assays (384-well) Convenient Format: All essential assay components

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Results Construct purification and coupling. Two A1-GP1bα ReaLiSM constructs, with and without cysteine residues near the N and C-termini (Fig. S2a), were expressed and purified by Ni affinity chromatography

More information

Human Factor XII ELISA Kit

Human Factor XII ELISA Kit Human Factor XII ELISA Kit Assaypro LLC 30 Triad South Drive St. Charles, MO 63304 T (636) 447-9175 F (636) 447-9475 www.assaypro.com For any questions regarding troubleshooting or performing the assay,

More information

DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli

DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli Supplementary Information DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli Geraldine Fulcrand 1,2, Samantha Dages 1,2, Xiaoduo Zhi 1,2, Prem Chapagain

More information

Tyrosine Kinase Assay Kit, Red*

Tyrosine Kinase Assay Kit, Red* Rh Tyrosine Kinase Assay Kit, Red* 1.0 INTRODUCTION Part # P2882, P2883 Lit. # L0531 Rev. 11/02 Page 1 of 6 The phosphorylation of proteins by protein tyrosine kinases (PTKs) is critical to the normal

More information

Regulatory proteins (inhibitors or activators) affect estimates of Mr of

Regulatory proteins (inhibitors or activators) affect estimates of Mr of Biochem. J. (1985) 226, 797-801 797 Printed in Great Britain Regulatory proteins (inhibitors or activators) affect estimates of Mr of enzymes and receptors by radiation inactivation A theoretical model

More information

PROCEDURE FOR USE NICKEL NTA Magnetic Agarose Beads (5%)

PROCEDURE FOR USE NICKEL NTA Magnetic Agarose Beads (5%) 1 AFFINITY HIS-TAG PURIFICATION PROCEDURE FOR USE NICKEL NTA Magnetic Agarose Beads (5%) DESCRIPTION Nickel NTA Magnetic Agarose Beads are products that allow rapid and easy small-scale purification of

More information

Strep-Spin Protein Miniprep Kit Catalog No. P2004, P2005

Strep-Spin Protein Miniprep Kit Catalog No. P2004, P2005 INSTRUCTION MANUAL Strep-Spin Protein Miniprep Kit Catalog No. P2004, P2005 Highlights Fast protocol to purify Strep-tagged proteins from cell-free extracts Screen your recombinant colonies directly for

More information

Department of Chemistry at Lehman College City University of New York

Department of Chemistry at Lehman College City University of New York Department of Chemistry at Lehman College City University of New York Biochemistry Laboratory, CHE 447, Syllabus, Spring 2011. Instructor: Cristina C. Clement, Ph.D., Chemistry Department, Lehman College,

More information

Supplementary material and methods

Supplementary material and methods Inhibitory effect of caffeic acid on ADP-induced thrombus formation and platelet activation involves mitogen-activated protein kinases Yu Lu 1,2,3,#, Quan Li 3,4,#, Yu-Ying Liu 3,4, Kai Sun 3,4, Jing-Yu

More information

For quantitative detection of mouse IGF-1 in serum, body fluids, tissue lysates or cell culture supernatants.

For quantitative detection of mouse IGF-1 in serum, body fluids, tissue lysates or cell culture supernatants. Mouse IGF-1 ELISA Kit (migf-1-elisa) Cat. No. EK0378 96 Tests in 8 x 12 divisible strips Background Insulin-like growth factor 1 (IGF-1), also known as somatomedin C, is a polypeptide protein hormone similar

More information

O-GlcNAcase Activity Assay

O-GlcNAcase Activity Assay O-GlcNAcase Activity Assay Prepared by Jen Groves and Junfeng Ma, The Johns Hopkins Unviersity School of Medicine Based on: Macauley MS et al., 2005. O-GlcNAcase uses substrate-assisted catalysis: kinetic

More information

SUPPLEMENTAL TABLE LEGENDS

SUPPLEMENTAL TABLE LEGENDS SUPPLEMENTAL DATA Recombinant protein details The DNA constructs used for this study add a His-tag (6 His) and an 8 residue spacer between the His-tag and the first residue (Asp) of mature human apoa-i

More information

Rat IGF-1 ELISA Kit (rigf-1-elisa)

Rat IGF-1 ELISA Kit (rigf-1-elisa) Rat IGF-1 ELISA Kit (rigf-1-elisa) Cat. No. EK0377 96 Tests in 8 x 12 divisible strips Background Insulin-like growth factor 1 (IGF-1), also known as somatomedin C, is a polypeptide protein hormone similar

More information

Binding of factors IX and IXa to cultured vascular endothelial cells (hemostasis/thrombosis/clot localization/intrinsic system)

Binding of factors IX and IXa to cultured vascular endothelial cells (hemostasis/thrombosis/clot localization/intrinsic system) Proc. Natl. Acad. Sci. USA Vol. 8, pp. 4119-4123, July 1983 Medical Sciences Binding of factors IX and IXa to cultured vascular endothelial cells (hemostasis/thrombosis/clot localization/intrinsic system)

More information

Supporting Information

Supporting Information Supporting Information Drugs Modulate Interactions Between the First Nucleotide-Binding Domain and the Fourth Cytoplasmic Loop of Human P-glycoprotein Tip W. Loo and David M. Clarke Department of Medicine

More information

Characterization of antithrombin-specific RNA aptamers for use in anticoagulant therapy

Characterization of antithrombin-specific RNA aptamers for use in anticoagulant therapy Characterization of antithrombin-specific RNA aptamers for use in anticoagulant therapy Yolanda M. Fortenberry, Ph.D. Hematology 2014 Conference Johns Hopkins University School of Medicine What are aptamers?

More information

Fluorescence Quenching of Human Serum Albumin by Caffeine

Fluorescence Quenching of Human Serum Albumin by Caffeine CHEM 411L Instrumental Analysis Laboratory Revision 2.1 Fluorescence Quenching of Human Serum Albumin by Caffeine In this laboratory exercise we will examine the fluorescence of Human Serum Albumin (HSA)

More information

Nanobiotechnology. Place: IOP 1 st Meeting Room Time: 9:30-12:00. Reference: Review Papers. Grade: 50% midterm, 50% final.

Nanobiotechnology. Place: IOP 1 st Meeting Room Time: 9:30-12:00. Reference: Review Papers. Grade: 50% midterm, 50% final. Nanobiotechnology Place: IOP 1 st Meeting Room Time: 9:30-12:00 Reference: Review Papers Grade: 50% midterm, 50% final Midterm: 5/15 History Atom Earth, Air, Water Fire SEM: 20-40 nm Silver 66.2% Gold

More information

SensoLyte 520 MMP-1 Assay Kit *Fluorimetric*

SensoLyte 520 MMP-1 Assay Kit *Fluorimetric* SensoLyte 520 MMP-1 Assay Kit *Fluorimetric* Revision# 1.2 Last Updated: February 2017 Catalog # Kit Size AS-71150 100 Assays (96-well) or 250 Assays (384-well) Convenient Format: All essential assay components

More information

Activation and specificity of Thrombin. Giulia Pavani

Activation and specificity of Thrombin. Giulia Pavani Activation and specificity of Thrombin Giulia Pavani Summary Regulation of a Serine Protease: Thrombin Zymogen Enzyme Substrate Specificity Staphylocoagulase Bacteria know how a protease works (much more

More information

Retinol Binding Protein Urinary EIA Kit

Retinol Binding Protein Urinary EIA Kit K-ASSAY KAMIYA BIOMEDICAL COMPANY KAMIYA BIOMEDICAL COMPANY Retinol Binding Protein Urinary EIA Kit For the quantitative determination of RBP in human, rat, dog and rhesus monkey urine Cat. No. KT-744

More information

Identification of Functionally Important Residues of the Epidermal Growth Factor-2 Domain of Factor IX by Alanine-scanning Mutagenesis

Identification of Functionally Important Residues of the Epidermal Growth Factor-2 Domain of Factor IX by Alanine-scanning Mutagenesis THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 277, No. 28, Issue of July 12, pp. 25393 25399, 2002 2002 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Identification

More information

Problem Set No. 3 Due: Thursday, 11/04/10 at the start of class

Problem Set No. 3 Due: Thursday, 11/04/10 at the start of class Department of Chemical Engineering ChE 170 University of California, Santa Barbara Fall 2010 Problem Set No. 3 Due: Thursday, 11/04/10 at the start of class Objective: To understand and develop models

More information

Tag-lite Tachykinin NK1 labeled Cells, ready-to-use (transformed & labeled), 200 tests* (Part# C1TT1NK1)

Tag-lite Tachykinin NK1 labeled Cells, ready-to-use (transformed & labeled), 200 tests* (Part# C1TT1NK1) TAG - L I T E Tag-lite Tachykinin NK1 Receptor Ligand Binding Assay protocol Tachykinin NK1 labeled cells for: 200 tests Part#: C1TT1NK1 Lot#: 03-1 March 2016 (See expiration date on package label) Store

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Contents: Supplementary Figure 1. Additional structural and binding data for designed tuim peptides. Supplementary Figure 2. Subcellular localization patterns of designed tuim

More information

Capto Blue and Capto Blue (high sub)

Capto Blue and Capto Blue (high sub) Data file 28-9369-6 AD Affinity chromatography Capto Blue and (high sub) and (high sub) are affinity chromatography media (resins) for the capture of human serum albumin (HSA), as well as purification

More information

ab Factor VIIIa Activity Assay Kit (Fluorometric)

ab Factor VIIIa Activity Assay Kit (Fluorometric) ab204696 Factor VIIIa Activity Assay Kit (Fluorometric) Instructions for Use For rapid, sensitive and accurate detection of Factor VIII activity. This product is for research use only and is not intended

More information

Human IL-10 ELISA MAX Set Deluxe

Human IL-10 ELISA MAX Set Deluxe Human IL-10 ELISA MAX Set Deluxe Cat. No. 430604 (5 plates) 430605 (10 plates) 430606 (20 plates) ELISA Set for Accurate Cytokine Quantification from Cell Culture Supernatant, Serum, Plasma or Other Body

More information

SensoLyte 520 Factor Xa Assay Kit *Fluorimetric*

SensoLyte 520 Factor Xa Assay Kit *Fluorimetric* SensoLyte 520 Factor Xa Assay Kit *Fluorimetric* Catalog # 72208 Kit Size 100 Assays (96-well plate) Optimized Performance: This kit is optimized to detect Factor Xa enzyme activity Enhanced Value: It

More information

Lecture FO7 Affinity biosensors

Lecture FO7 Affinity biosensors Lecture FO7 Affinity biosensors Dr. MAK Wing Cheung (Martin) Biosensors & Bioelectronic Centre, IFM Email: mamak@ifm.liu.se Phone: +4613286921 (21 Feb 2014) Affinity biosensors Affinity biosensors: devices

More information

Human Serum Albumin (HSA) ELISA Quantitation Kit. Manual

Human Serum Albumin (HSA) ELISA Quantitation Kit. Manual Human Serum Albumin (HSA) ELISA Quantitation Kit Manual Catalog number: 40-288-10067F For the quantitative determination of human serum albumin levels in plasma or other biological samples. This kit is

More information

GSI Rabbit TGFβ1 ELISA Kit- 2 plates DataSheet

GSI Rabbit TGFβ1 ELISA Kit- 2 plates DataSheet TGFβ1 (transforming growth factor beta 1) was first identified in human platelets as a protein with a molecular mass of 25 kilodaltons with a potential role in wound healing (1). TGFB1, TGFB2, and TGFB3

More information

PURIFICATION, SUBUNIT DETERMINATION,

PURIFICATION, SUBUNIT DETERMINATION, 7/25/2008 UCLA CHEM 153L BIOCHEMICAL METHODS I SUMMER 2008 PROFESSOR STEVEN J. KIM TA MAURICE SECTION 1C GROUP MOO0OO PURIFICATION, SUBUNIT DETERMINATION, AND KINETICS OF LACTATE DEHYDROGENASE REPORT BY

More information

Tissue Factor Human Chromogenic Activity Assay Kit

Tissue Factor Human Chromogenic Activity Assay Kit ab108906 Tissue Factor Human Chromogenic Activity Assay Kit Instructions for Use For the quantitative measurement of Human Tissue Factor activity in plasma, serum, urine, tissue and cell culture extracts

More information

Chapter 5: Proteins: Primary Structure

Chapter 5: Proteins: Primary Structure Instant download and all chapters Test Bank Fundamentals of Biochemistry Life at the Molecular Level 4th Edition Donald Voet https://testbanklab.com/download/test-bank-fundamentals-biochemistry-life-molecular-level-

More information

Reach greater highs. (and lows ) with new protein ladder choices. Fermentas now sold as. Thermo Scientific

Reach greater highs. (and lows ) with new protein ladder choices. Fermentas now sold as. Thermo Scientific Introducing Thermo Scientific Pierce Prestained and Unstained s for easy protein molecular weight determination. Fermentas now sold as Thermo Scientific Reach greater highs (and lows ) with new protein

More information

SensoLyte Rh110 Factor Xa Assay Kit *Fluorimetric*

SensoLyte Rh110 Factor Xa Assay Kit *Fluorimetric* SensoLyte Rh110 Factor Xa Assay Kit *Fluorimetric* Catalog # 72207 Kit Size 100 Assays (96-well plate) Optimized Performance: This kit is optimized to detect Factor Xa enzyme activity Enhanced Value: It

More information

BIBC 103 Letter Grade Credit by Examination. Student Information Sheet

BIBC 103 Letter Grade Credit by Examination. Student Information Sheet BIBC 103 Letter Grade Credit by Examination Student Information Sheet This exam is a comprehensive test of the concepts, skills, competencies learned in the BIBC 103 (Biochemical Techniques) course. It

More information

Effect of Hydrogen Ion Concentration and Buffer Composition on Ligand Binding Characteristics and Polymerization of Cow s Milk Folate Binding Protein

Effect of Hydrogen Ion Concentration and Buffer Composition on Ligand Binding Characteristics and Polymerization of Cow s Milk Folate Binding Protein Bioscience Reports, Vol. 21, No. 6, December 2001 ( 2002) Effect of Hydrogen Ion Concentration and Buffer Composition on Ligand Binding Characteristics and Polymerization of Cow s Milk Folate Binding Protein

More information

SensoLyte 440 West Nile Virus Protease Assay Kit *Fluorimetric*

SensoLyte 440 West Nile Virus Protease Assay Kit *Fluorimetric* SensoLyte 440 West Nile Virus Protease Assay Kit *Fluorimetric* Revision Number: 1.1 Last updated: October 2014 Catalog # Kit Size AS-72079 500 Assays (96-well) Optimized Performance: This kit is optimized

More information

TAG-LITE RECEPTOR LIGAND BINDING ASSAY

TAG-LITE RECEPTOR LIGAND BINDING ASSAY TAG - L I T E TAG-LITE RECEPTOR LIGAND BINDING ASSAY PROTOCOL ASSAY PRINCIPLE The Tag-lite Ligand Binding Assay is a homogeneous alternative to radio ligand binding assays for HTS and compound profiling.

More information

SensoLyte 490 MMP-1 Assay Kit *Fluorimetric*

SensoLyte 490 MMP-1 Assay Kit *Fluorimetric* SensoLyte 490 MMP-1 Assay Kit *Fluorimetric* Catalog # 71128 Unit Size Kit Size 1 kit 500 assays (96-well) or 1250 assays (384-well) This kit is optimized to detect MMP-1 activity using an Edans/ DabcylPlus

More information

Supplemental Figure 1. Ribose-614 cleavage is unaffected by the addition of 10%

Supplemental Figure 1. Ribose-614 cleavage is unaffected by the addition of 10% Supplemental Figure 1. Ribose-614 cleavage is unaffected by the addition of 1% complementary strand. Addition of equimolar amounts of the complement greatly lowers cleavage rate and plateau. (A) Cleavage

More information

MagExtactor -His-tag-

MagExtactor -His-tag- Instruction manual MagExtractor-His-tag-0905 F0987K MagExtactor -His-tag- Contents NPK-701 100 preparations Store at Store at 4 C [1] Introduction [2] Components [3] Materials required [4] Protocol3 1.

More information

Strep-Spin Protein Miniprep Kit Catalog No. P2004 & P2005

Strep-Spin Protein Miniprep Kit Catalog No. P2004 & P2005 INSTRUCTION MANUAL Strep-Spin Protein Miniprep Kit Catalog No. P2004 & P2005 Highlights Fast & Simple: Purify Strep-tagged proteins from cell-free extracts using a spin-column in 7 minutes High-Quality:

More information

His-Spin Protein Miniprep

His-Spin Protein Miniprep INSTRUCTIONS His-Spin Protein Miniprep Catalog No. P2001 (10 purifications) and P2002 (50 purifications). Highlights Fast 5 minute protocol to purify His-tagged proteins from cell-free extracts Screen

More information

Lecture 7: 9/7. CHAPTER 7 Kinetics and Regulation

Lecture 7: 9/7. CHAPTER 7 Kinetics and Regulation Lecture 7: 9/7 CHAPTER 7 Kinetics and Regulation Chapter 7 Outline The rate or velocity of an enzymatic reaction Consider a simple reaction: The velocity or rate of the reaction is determined by measuring

More information

IgG1 (Human) ELISA Kit

IgG1 (Human) ELISA Kit IgG1 (Human) ELISA Kit Catalog Number KA1730 96 assays Version: 02 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Background... 3 Principle of the Assay... 3 General

More information

Product Information Sheet (M ) MarkerGene TM Fluorescent Protease Assay Kit (Product M1319)

Product Information Sheet (M ) MarkerGene TM Fluorescent Protease Assay Kit (Product M1319) Product Information Sheet (M1319-005) MarkerGene TM Fluorescent Protease Assay Kit (Product M1319) 1 2 Product Information Sheet (M1319-005) MarkerGene TM Fluorescent Cellulase Assay Kit (Product M1319)

More information

5.36 Biochemistry Laboratory Spring 2009

5.36 Biochemistry Laboratory Spring 2009 MIT OpenCourseWare http://ocw.mit.edu 5.36 Biochemistry Laboratory Spring 2009 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms. Laboratory Manual for URIECA

More information