INTRODUCTION TO GENOMIC EPIDEMIOLOGY OF
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1 VENUE HOSTS INTRODUCTION TO GENOMIC EPIDEMIOLOGY OF INFECTIOUS DISEASES MCGILL UNIVERSITY MONTREAL JUNE 19-23, 2017 COURSE DIRECTORS Marcel Behr, MD, MSc Robyn Lee, PhD Erwin Schurr, PhD DAY 1 DAY 2 DAY 3 DAY 4 DAY 5 Mon June 19 Tues June 20 Wed June 21 Thurs June 22 Fri June AM 5.00PM 9.00AM 5.00PM 9.00AM 5.00PM 9.00AM 5.00PM 9.00AM 3.30PM Introduction to Genomic Epidemiology and WGS data analysis I WGS data analysis II Using WGS to infer transmission of bacterial pathogens Using WGS to predict antimicrobial resistance Beyond bacteria: other applications & practical considerations *Faculty and speaker information is available in the event app* Centre Mont-Royal 2200 Rue Mansfield, Montréal, QC H3A 3R8
2 DAY 1 AGENDA MONDAY, JUNE AM AM AM PM Registration Welcome, introductions, and goals Introduction to genomic epidemiology and microbiology basics Introduction to next-generation sequencing technology K Dewar Bioinformatics methods I Bioinformatics methods II Introduction to practical workshops PM PM Practical Exercises: Intro to Galaxy PM PM Practical Exercises: WGS data quality Practical Exercises: WGS data quality PM 5.15PM PM Summary of the day, goals for tomorrow and introduction to journal clubs Group Picture Summer Institute Social Venue: Students Society of McGill University (3480 rue McTavish, Montreal, QC, H3A 1X9) Complimentary snacks and non-alcoholic drinks Wine can be purchased with cash. Introduction to Genomic Epidemiology of Infectious Diseases Behr, Lee & Schurr June 19 23,
3 DAY 2 AGENDA TUESDAY, JUNE PM Coffee break included PM PM Bioinformatics methods III Study design in genomic epidemiology Phylogenetics I Journal Club,, & Phylogenetics II Practical Exercises: Mapping to a reference T Seeman Practical Exericses: Building and interpreting a phylogenetic tree Summary of the day, goals for tomorrow Introduction to Genomic Epidemiology of Infectious Diseases Behr, Lee & Schurr June 19 23,
4 DAY 3 AGENDA WEDNESDAY, JUNE PM PM PM PM PM Within-host diversity J Shapiro Molecular clocks and dating Inferring transmission of M. tuberculosis J Gardy Practical Exercise: Phylo trees, SNP matrices and epi data- inferring transmission and data visualization Practical Exercise continued: Phylo trees, SNP matrices and epi data- inferring transmission and data visualization Journal Club I,, & Applications of WGS to public health at BC CDC J Gardy Practical Exercise: Transmission trees J Gardy Summary of the day, goals for tomorrow Introduction to Genomic Epidemiology of Infectious Diseases Behr, Lee & Schurr June 19 23,
5 DAY 4 AGENDA THURSDAY, JUNE AM-11.15PM PM Coffee break included PM PM PM Mechanisms for antimicrobial resistance Genotyping- lab-based and in silico, Predicting antimicrobial resistance Journal Club,, J Gardy, & Identifying plasmid-mediated outbreaks V Allen Practical Exercises: Genotyping and antimicrobial resistance- gene presence / absence Practical Exercises: Antimicrobial resistance SNPs Summary of the day, goals for tomorrow Wine and Cheese Reception Room TBA Introduction to Genomic Epidemiology of Infectious Diseases Behr, Lee & Schurr June 19 23,
6 DAY 5 AGENDA FRIDAY, JUNE PM PM PM Application of WGS to parasites G Matlashewski GWAS E Schurr Incorporating WGS into the public health laboratory: Ontario s experience V Allen Journal Club,, & Summary Lecture Course evaluations L Dery-Capes Panel question and answer period (optional) All available instructors Introduction to Genomic Epidemiology of Infectious Diseases Behr, Lee & Schurr June 19 23,
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