Package qcqpcr. February 8, 2018
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1 Type Package Title Version 1.5 Date Author Package February 8, 2018 Maintainer Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qpcr). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software < This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). Imports ggplot2 License MIT + file LICENSE Depends R (>= 2.10) NeedsCompilation no Repository CRAN Date/Publication :44:50 UTC R topics documented: -package Index 5 1
2 2 -package -package Details Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qpcr). This function calculates Enrichment value with respect to reference for each histone modification (specific to Vii7 software < This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qpcr). This function calculates Enrichment value with respect to reference for each histone modification (specific to Vii7 software < 7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). The DESCRIPTION file: Package: Type: Package Title: Version: 1.5 Date: Author: Maintainer: : Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain Imports: ggplot2 License: MIT + file LICENSE Depends: R (>= 2.10) NeedsCompilation: no Packaged: :24:48 UTC; epigenomics_lab_01 Index of help topics: -package qpcr ChIP-seq Results Histone ChIP-Seq qpcr Analyzer (xx, Title for you graph ) Author(s)
3 3 Examples library(ggplot2) data() (,'Title for your graph') Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qpcr). This function calculates Enrichment value with respect to reference for each histone modification (specific to Vii7 software < This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). Usage (xx, Name) Arguments xx Name Your Data Set... Title for you graph, (ie: Projects name and date) Author(s) Examples library(ggplot2) data() (,'Title for your graph')
4 4 qpcr ChIP-seq Results A dataset containing the the CT values of ChIPseq libraries. Usage Format A data frame with 82 rows and 11 variables Source Hirst Lab, UBC Vancouver, Canada
5 Index Topic datasets, 4 Topic qpcr, 3 -package, 2, 3 -package, 2, 4 5
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