Role of Retinoic Acid in Lens Regeneration

Size: px
Start display at page:

Download "Role of Retinoic Acid in Lens Regeneration"

Transcription

1 DEVELOPMENTAL DYNAMICS 219: (2000) BRIEF COMMUNICATION Role of Retinoic Acid in Lens Regeneration PANAGIOTIS A. TSONIS, 1 *MICHAEL T. TROMBLEY, 1 TIMOTHY ROWLAND, 1 ROSHANTHA A.S. CHANDRARATNA, 2 AND KATIA DEL RIO-TSONIS 3 * 1 Laboratory of Molecular Biology, Department of Biology, University of Dayton, Dayton, Ohio 2 Retinoid Research, Department of Chemistry and Biology, Allergan Inc., Irvine, California 3 Department of Zoology, Miami University, Oxford, Ohio Prompted by the actions of retinoids and their receptors in gene regulation, in the developing eye and especially in the lens, we have undertaken adetailed study to examine the effects of retinoids on urodele lens regeneration. First, we examined the effects of exogenous retinoids. It was found that exogenous retinoids had no significant effect on lens regeneration. However, when synthesis of retinoic acid was inhibited by disulfiram, or when the function of the retinoid receptors was impaired by using arar antagonist, the process of lens regeneration was dramatically affected. In the majority of the cases, lens regeneration was inhibited and lens morphogenesis was disrupted. In afew cases, we were also able to observe ectopic lens regeneration from places other than the normal site, which is from the dorsal iris. The most spectacular case was the regeneration of alens from the cornea, an event possible only in premetamorphic frogs. These data show that inhibition of retinoid receptors is paramount for the normal course and distribution of lens regeneration. We havealsoexaminedexpressionofrar-deltaduring lens regeneration. This receptor was expressed highly in the regenerating lens only. Therefore, it seems that this receptor is specific for the regeneration process and consequently such expression correlates well with the effects of RAR inhibition observed in our studies Wiley-Liss, Inc. Key words: newt; lens; regeneration; retinoids INTRODUCTION Lens regeneration in adult amphibia is one of the most spectacular cases of transdifferentiation of aterminally differentiated cell type to another. Indeed, after lens removal, the pigment epithelial cells from the dorsal iris dedifferentiate and then transdifferentiate to lens cells (Tsonis, 1999, 2000a,b). Although in vivo lens regeneration is possible in amphibia and some fishes, pigment epithelium from many animals (including humans) has the capacity for in vitro transdifferentiation to lens cells. Such aproperty of the pigment epithelium has urged many scientists to investigate lens regeneration to identify the factors that are involved and thus delineate the mechanisms of transdifferentiation and lens regeneration. Recently, afew factors have been found to be specifically expressed in the dorsal iris during dedifferentiation of the pigment epithelium and the formation of the lens vesicle. These factors are Pax-6, FGFR-1, and the homeobox-containing Prox-1. (Del Rio-Tsonis et al., 1995, 1997, 1998, 1999).Tofurtherextendandunderstandtheregulative events during lens regeneration we have turned our attentiontosomeotherimportantregulatorsthatseem to be involved with Pax-6, homeobox, and FGF signaling pathways. Acting through their nuclear receptors, retinoids have been implicated in determining the differentiationandmorphogenesisofseveraltissues.thesereceptors when dimerized are transcriptional factors able to activate genes that possess elements in their regulatory regions that can be occupied by them. One of the organs whose development is largely dependent on retinoids and their receptors is the eye. During eye development, retinoic acid is synthesized in the retina and controls the fate of the cells comprising the neural retina. Retinoids are synthesized asymmetrically in the developing retina as has been determined by the expression of the enzymes responsible for their synthesis (McCaffery et al., 1992, 1993; Hyatt et al., 1996; Wagner et al., 2000). The activation of certain retinoic acid receptors (RARs) has been found critical for retina morphogenesis. In mice lacking retinoid receptors the ventral iris is not developed (Kastner et al., 1994). In addition to these roles in retina development, exogenous retinoic acid has been implicated in the induction of ectopic lens differentiation during eye development Grant sponsor: National Institutes of Health; Grant number: EY *Correspondence to: Panagiotis A. Tsonis, Laboratory of Molecular Biology, Department of Biology, University of Dayton, Dayton, OH tsonis@neelix.udayton.edu or Katia Del Rio-Tsonis, Department of Zoology, Miami University, Oxford, OH Received 11 July 2000; Accepted 6September WILEY-LISS, INC.

2 RETINOIC ACID IN LENS REGENERATION 589 (Manns and Fritzsch, 1991). In addition, retinoids/receptors activate expression of crystallins, including alphab-crystallin, a protein characterizing terminal differentiation of the lens (Gopal-Srivastava et al., 1998). The retinoid receptors activate expression of alphabcrystallin gene by means of the lens-specific regulatory regions found in its promoter, same regions used by Pax-6 to activate alphab-crystallin. Indeed, RA signaling in the developing eye is dependent on Pax-6. In mice carrying a Pax-6 mutation, retinoid signaling in the eye is decreased and the lens anlage cannot respond to exogenous RA (Enwright and Grainer, 2000). Pax-6 is an eye and lens determining master gene and mutations can disrupt lens morphology as well (Ton et al., 1991; Duncan et al., 2000). These properties of retinoids and their receptors during eye and lens development as well as involvement of retinoids in regulation of genes that might be important for lens regeneration have prompted us to examine their role in amphibian lens regeneration. Indeed our results indicate a role of retinoids/receptors in lens regeneration, which is consistent with their role in the developing eye. TABLE 1. Effects of Various Treatments on Newt Lens Regeneration Treatment Total eyes treated Number of lenses affected Control 31 0 All-trans-retinoic acid cis-retinoic acid 30 0 Retinol palmitate 27 0 Disulfiram a RAR antagonist b a Three cases of dedifferentiation and vesicle formation in the ventral iris. b Three cases of ectopic lens formation. TABLE 2. Breakdown of Antagonist and Disulfiram Treatments on Newt Eyes Treatment Total eyes treated Number of lenses affected Antagonist soln (22 M) 16 8 Antagonist soln (50 M) antagonist bd (10 mg/ml) antagonist bds (10 mg/ml) antagonist bd (20 mg/ml) 10 5 a 2 antagonist bds (20 mg/ml) 9 6 Disulfiram solution Disulfiram bd (50 mg/ml) 9 3 Disulfiram bd (225 mg/ml) 5 3 a Three cases of ectopic lens regeneration. RESULTS AND DISCUSSION Lens regeneration in the adult newt begins with dedifferentiation and proliferation of dorsal iris pigment epithelium cells (PECs). By dedifferentiation, we mean the loss of characteristics that define the pigment epithelial cells, such as pigmentation. Dedifferentiation initiates molecular events, such as re-entering the cell cycle, which are necessary for cell proliferation and the subsequent regeneration of the lens. At approximately 10 days postlentectomy, a lens vesicle is formed from the depigmented dorsal PECs. Around 12 to 16 days postlentectomy, the internal layer of the lens vesicle thickens and synthesis of crystallins begins. This event marks the beginning of primary lens fiber differentiation. During days 15 to 19, proliferation and depigmentation of PECs slows down. In the internal layer, the lens fiber complex is formed and in the margin of the external layers nondividing secondary lens fibers appear. By 18 to 20 days, the PECs have stopped proliferating and the lens fibers continue to accumulate crystallins. Lens regeneration is considered complete by day Therefore, lens regeneration is possible by transdifferentiation, which is the differentiation of one cell type from another (in this case lens cells from pigment epithelial cells). The process of dedifferentiation and transdifferentiation has been proven beyond any doubt in this system. When single PEC cells are placed in culture these processes can be observed. As the PECs proliferate, they become depigmented and then transdifferentiate to lens cells (Eguchi et al., 1974). Therefore, although in many other regenerative tissues stem cells may play a role, such a possibility is very low for lens regeneration. We have found that treating newts with exogenous retinoids after lentectomy has no effect on the regenerating lens. All-trans-retinoic acid, 9-cis-retinoic acid (injections), and retinol palmitate (solution) all failed to interfere with the regeneration of the lens in newt eye, nor were able to elicit lens regeneration from any other site in the eye (Table 1). Treatment of lentectomized eyes with beads soaked in retinoids or agonists to RAR and RXR resulted in no effects as well (not shown). To determine whether retinoic acid and RAR are required for normal lens regeneration, we performed experiments aiming in depriving the lentectomized eye of RA. In one series of experiments we blocked the synthesis of retinoic acid with disulfiram. Disulfiram has been shown to inhibit the action of retinal aldehyde dehydrogenase (Vallari and Pietruszko, 1982), thus preventing the synthesis of retinoic acid. Disulfiram has been shown to inhibit the synthesis of retinoic acid from retinaldehyde in the chick, mouse, and rat retina at concentrations between 1 and 10 M (McCaffery et al., 1992, 1993). Whereas at 20 days postlentectomy, the control newts had almost completely regenerated lenses, in newts treated with 10 M disulfiram, we found inhibition or retardation of lens regeneration in over 50% (19 of 35) of cases (Tables 1, 2). Figure 1 shows a lens inhibited by disulfiram. Interestingly, in some cases, we observed dedifferentiation and vesicle formation in the ventral iris as well that was comparable to that in the dorsal iris (Fig. 1). A second series of experiments involved blocking the action of retinoic acid receptors (RARs). To accomplish

3 590 TSONIS ET AL. Figure 1. Figure 2.

4 RETINOIC ACID IN LENS REGENERATION 591 this, we used the RAR antagonist (Allergan). This compound has been shown to be a high affinity antagonist of RA-induced function of all three RAR subtypes (alpha, beta, and gamma). Pooling results from all delivering methods used, approximately 60% (43 of 71) of cases showed inhibition, retardation, or abnormal morphogenesis of the lens (Tables 1, 2). Altering the concentration or number of beads did not produce a significant difference in results. Changing the concentration of the antagonist in solution did produce an effect, however. At 22 M, the lens was effected in 50% (8 of 16) of cases, whereas at 50 M the lens was affected in 75% (9 of 12) of cases (Table 2). Such affected regenerated lenses are shown in Figure 1. However, the most interesting result of the antagonist treatments involved the site at which lens regeneration occurred. In some cases, we observed ectopic lens regeneration (Fig. 1). The most spectacular was a case of lens regeneration from the cornea (Fig. 1E,F) a process possible only in premetamorphic frogs (Filoni et al., 1997). Despite that these cases of ectopic lens regeneration are few, they definitely are very significant and suggest that RARs are involved in the different modes of lens regeneration occurring in different animals. The reader should bear in mind that such an ectopic regeneration can never occur in adult newts, and it has never been observed under normal circumstances. In our laboratory and over the past few years, we have used several hundreds control regenerating eyes that have received a bead soaked in DMSO, without seeing any effect on lens regeneration. In this context the effect of beads soaked in antagonist cannot be an artifact. Also after each lentectomy, the lens is checked macroscopically for any part (lens epithelium) left behind. Any suspicious cases are never used. But the best argument that the effects of RAR antagonist are real and specific is that all ectopic cases (3 of 10) were resulted with a particular treatment (administration of one bead soaked in 20 mg/ml solution). In all cases of ectopic lens regeneration, the normal regeneration from the dorsal iris was inhibited, crediting the arguments against any artifact. Therefore, these results clearly implicate retinoids and their receptors in the control of lens regeneration, possibly by a concentration-specific mechanism. It is possible that PE cells capable of transdifferentiation are very sensitive to a particular concentration of retinoids or RARs or susceptible within a specific time window. The different modes of regeneration might be controlled by the differential use of retinoid isoforms and their receptor dimer choice. Obviously, surpassing a concentration threshold would have no effect on these mechanisms and perhaps that is why we did not observe any effect with the exogenous retinoids. However, lowering the concentration of retinoids and, therefore, reducing the number of functional receptors, can result in impairment of lens regeneration from the dorsal iris and trigger it from other places. This could suggest the existence of retinoid gradients in the eye. Such gradients have been shown in mice (McCaffery et al., 1992), but nothing is known about them in newts and their role in lens regeneration. Alternatively, it could be that when antagonists are bound to RARs, they keep the receptors in the conformation that can interact with co-repressors. This, in turn, would change the number or receptors that can be occupied by agonists (Soderstrom et al., 1997; Perissi et al., 1999). In all, our results provide the first concrete evidence of a role of retinoids in lens regeneration and strongly suggest that the use of retinoids/receptors might elucidate the mechanisms involved in the different types of lens regeneration (e.g., newt vs. frog) and its absence in other vertebrates. The above data clearly allude that RARs are expressed in the regenerating newt lens. Therefore, an important corroboration would be to show expression of Fig. 1. A: A section through a normal lens (control) regenerated 20 days post lentectomy (10 ). Note that the lens regenerated from the dorsal iris (di). Vi, ventral iris; c, cornea; le, lens epithelium (large arrowhead). The small arrowheads indicate the differentiation of lens fibers (elongated cells) in the posterior part of the lens. a: anterior part of the eye, p: posterior B: Lens regeneration in an eye treated with disulfiram. Note the inhibition of the regenerating lens (rl) at the tip of the dorsal iris. The tip of the ventral iris (vi) also shows some degree of dedifferentiation. Also, detachment of the retina (r) can be observed (20 ). C H: Lens regeneration in eyes treated with RAR antagonist. C: Inhibition of lens regeneration from the dorsal iris. The regenerating lens (rl) has not advanced beyond the initial stages of dedifferentiation (20 ). D: Retardation and abnormalities of the regenerating lens (arrowhead). The lens is oblong and positioned more dorsally and posteriorly than a normal regenerating lens (20 ). di: dorsal iris. E F: A case of lens regeneration from the cornea. E: Note the continuity between the regenerating lens (arrowhead) and the cornea (c). F: We can observe the differentiation of elongated primary lens fibers in the posterior part of the lens, which is a dominant feature of lens morphology (arrowheads) (20 ). G: A case of lens regeneration in the ventral part of the eye. The regenerating lens is clearly associated with the ventral iris (vi) and not the dorsal iris (di) (10 ). H: A case of double lens regeneration from the dorsal iris. Note the small lens vesicle (arrowhead) at the tip of the dorsal iris (di) (at the correct location) and the abnormal regenerating lens (rl) dorsal and posterior to the dorsal iris (20 ). All eyes were examined 20 days postlentectomy. Fig. 2. Expression of RAR-delta during lens regeneration. A: A section through an eye with an intact lens. No expression is evident in the lens (4 ). B: A section through the retina of an intact eye. Some weak expression of RAR-delta is detected in the ganglion cells (g) (20 ). C: A section through a 10-day regenerating lens. Expression can be seen in the dedifferentiating dorsal iris as the lens vesicle is formed (arrowhead) (20 ). D: A section through a 15-day regenerating lens. Again, the expression is evident in the regenerating lens (20 ). E: A section though a regenerating lens 20 days postlentectomy. Note high expression in the lens epithelium and lens fibers (20 ). F: A section through a 15-day regenerating lens hybridized with the sense probe (negative control). Note the absence of any staining (20 ). G,H: Sections through the ventral iris corresponding to the same stages as in C and D. Even though the cells are obscured by the heavy pigmentation, not much purple color comparable to the dorsal counterparts (indicating expression) is apparent.

5 592 TSONIS ET AL. RARs in the newt eye. To address this question, we used a newt RAR-delta probe. This particular gene was selected because it has been shown to be instrumental for the effects of retinoic acid on limb regeneration in the newt (Pecorino et al., 1996). The in situ hybridization showed some very interesting results. RAR-delta is expressed in very low levels in the intact newt eye. Most of this expression is restricted in the ganglion cell layer, whereas the lens does not show any significant level above background. However, as the pigment epithelial cells dedifferentiate and start forming a vesicle, the receptor is expressed. Its expression reaches higher levels as the vesicle grows, with highest when lens fibers differentiate (Fig. 2). These results indicate that RAR-delta is important for the transdifferentiation process as well for the differentiation of lens fibers and can explain why inhibition of RAR receptors can affect the regenerating lens. The clear difference in expression patterns with the intact lens further strengthens the role of this receptor in the regeneration of the lens. This is the first transcription factor that seems to be specifically regulated in the regenerating lens when compared with the intact lens. Such a unique regulation could become an important tool in understanding the mechanisms involved in lens regeneration. EXPERIMENTAL PROCEDURES Animal Operations Newts (Notophthalmus viridescens) were lentectomized under general anesthesia by using 1% 3-aminobenzoic acid ethyl ester (Sigma). Eyes were collected at different stages of lens regeneration, fixed, embedded in paraffin, and processed for either histologic staining or in situ hybridization. Treatment With Exogenous Retinoids Newts were treated with 9-cis-retinoic acid and alltrans-retinoic acid at 100 g/g body weight by injection at 4 days postlentectomy and by immersing them in solution of 10 units/ml retinol palmitate for 5 days immediately after lentectomy. We used these concentrations based on the effects they elicit during limb regeneration (Tsonis, 1996). Newts were also treated with beads soaked in 9-cis-retinoic acid, all-trans-retinoic acid, an RAR agonist (AGN , Allergan), and an RXR agonist (AGN , Allergan). Beads were soaked in 10 or 20 mg/ml solution of these substances in DMSO. We used the AG1-X2 formate beads ( mesh) from Bio-Rad. Treatment With Disulfiram and RAR Antagonist Newts were treated with disulfiram, a compound that prevents the synthesis of retinoic acid (Vallari and Pietruszko, 1982; Maden, 1997). Disulfiram was administered in 10 M solution by first dissolving it in DMSO and then adding it directly to the water. Experimental animals were kept in disulfiram continuously after lentectomy, and control animals were kept in the same concentration of DMSO. Disulfiram was also administered by bead. Beads were soaked in DMSO overnight. Experimental beads were soaked overnight in either 50 mg/ml or 225 mg/ml of disulfiram in DMSO. Newts were also treated with a potent RAR-specific antagonist (193109, Allergan) (Standenev et al., 1996) by several different methods. Experimental beads were soaked overnight in the RAR antagonist at either 10 or 20 mg/ml in DMSO. Beads were then placed into the center of the eye immediately after lentectomy. Some newts received an additional bead inserted ventrally and posteriorly to the original cut 11 days postlentectomy. Control newts received DMSO-soaked beads. Newts were also treated by immersing them into a solution of the antagonist. The antagonist was dissolved in DMSO and was added to the water at either 22 Mor50 M. The newts in solution were treated for 24 hours once every 3 days up to 25 days postlentectomy. Newt RAR-delta Probe A newt probe for RAR-delta (homologue of mammalian gamma1) (Pecorino et al., 1996) was a gift from Dr. Jeremy P. Brockes (University College London). The probe was transcribed with T3 and T7 RNA polymerases to create sense and antisense transcripts and labeled with digoxigenin-11 UTP. The probes were then hydrolyzed with alkali and used for in situ hybridization with sections of regenerating lens taken at different times after lentectomy. In Situ Hybridization This technique was performed as described extensively in other studies (Del Rio-Tsonis et al., 1998, 1999). ACKNOWLEDGMENT P.A.T. received support from the National Institutes of Health. REFERENCES Del Rio-Tsonis K, Washabaugh CH, Tsonis PA Expression of pax-6 during urodele eye development and lens regeneration. Proc Natl Acad Sci USA 92: Del Rio-Tsonis K, Jung J-C, Chiu I-M, Tsonis PA Conservation of fibroblast growth factor function in lens regeneration. Proc Natl Acad Sci USA 94: Del Rio-Tsonis K, Trombley MT, McMahon G, Tsonis PA Regulation of lens regeneration by fibroblast growth factor receptor 1. Dev Dyn 213: Del Rio-Tsonis K, Tomarev SI, Tsonis PA Regulation of Prox-1 during lens regeneration. Invest Ophthalmol Vis Sci 40: Duncan MK, Cvekl A, Li, X, Piatigorsky J Truncated forms of Pax-6 disrupts lens morphology in transgenic mice. Invest. Ophthalmol. Vis. Sci. 41: Eguchi G, Abe S-I, Watanabe K Differentiation of lens-like structures from newt iris epithelial cells in vitro. Proc Natl Acad Sci USA 71: Enwright JF, Grainer RM Altered retinoid signaling in the heads of small eye mouse embryos. Dev Biol 221: Filoni S, Bernardini S, Cannata SM, D Alessio A Lens regeneration in larval Xenopus laevis: experimental analysis of the decline in the regenerative capacity during development. Dev Biol 187:13 24.

6 RETINOIC ACID IN LENS REGENERATION 593 Gopal-Srivastava R, Cvekl A, Piatigorsky J Involvement of retinoic acid/retinoid receptors in the regulation of murine alphabcrystallin/small heat shock protein gene expression in the lens. J Biol Chem 273: Hyatt GA, Schmitt EA, Marsh-Armstrong N, McCaffery P, Drayer UL, Dowling JE Retinoic acid establishes ventral retinal characteristics. Development 122: Kastner P, Gronodona JM, Mark M, Gansmuller A, LeMeur M, Decimo D, Vonesch J, Dolle P, Chambon P Genetic analysis of RXR developmental function: convergence of RXR and RAR in signaling pathways in heart and eye morphogenesis. Cell 78: Maden M Retinoic acid and its receptors in limb regeneration. Cell Dev Biol 8: Manns M, Fritzsch B The eye in the brain: retinoic acid effects morphogenesis of the eye and pathway selection of axons but not differentiation of the retina in Xenopus laevis. Neurosci Lett 127: McCaffery P, Lee M, Wagner MA, Sladek NE, Drager UC Asymmetrical retinoic acid synthesis in the dorsoventral axis of the retina. Development 115: McCaffery P, Posch KC, Napoli JL, Gudas L, Drager UC Changing patterns of the retinoic acid system in the developing retina. Dev Biol 158: Pecorino LT, Entwistle A, Brockes PA Activation of a single retinoic acid receptor isoform mediates proximodistal respecification. Curr Biol 6: Perissi V, Staszewski LM, McInerney EM, Kurokawa R, Krones A, Rose DW, Lambert MH, Milburn MV, Glass CK, Rosenfeld MG Molecular determinants of nuclear receptors- corepressor interactions. Genes Dev 13: Soderstrom M, Vo A, Heinzel T, Lavinsky RM, Yang WM, Seto E, Peterson DA, Rosenfeld MG, Glass CK Differential effects of nuclear corepressor (N-CoR) expression on retinoic acid receptormediated repression support the existence of dynamically regulated corepressor complexes. Mol Endocrinol 11: Standeven AM, Johnson AT, Escobar M, Chandraratna RAS Specific antagonist of retinoid toxicity in mice. Toxicol Appl Pharmacol 138: Ton CCT, Hirvonen H, Miwa H, Weil MM, Monaghan P, Jordan T, van Heyningen V, Hastie ND, Meijers-Heijboer H, Drechsler M, Royer-Pokora B, Collins F, Swarrop A, Strong LC, Saunders GF Positional cloning and characterization of a paired box and a homeobox-containing gene from the aniridia region. Cell 67: Tsonis PA Limb regeneration. Cambridge: Cambridge University Press. Tsonis PA Regeneration of the lens and other eye structures. In: Embryonic encyclopedia of life science. London: Nature Publishing Company. Available at: Tsonis PA. 2000a. Regeneration of the lens in amphibia. In: Fini E, editor. Vertebrate eye development. Heidelberg: Spinger-Verlag. Tsonis PA. 2000b. Regeneration in vertebrates. Dev Biol 221: Vallari RC, Pietruszko R Human aldehyde dehydrogenase: mechanism of inhibition of disulfiram. Science 216: Wagner E, McCaffery P, Drager UC Retinoic acid in the formation of the dorsoventral retina and its central projections. Dev Biol 222:

A unique aged human retinal pigmented epithelial cell line useful for studying lens differentiation in vitro

A unique aged human retinal pigmented epithelial cell line useful for studying lens differentiation in vitro Int. J. Dev. Biol. 45: 753-758 (2001) Original Article A unique aged human retinal pigmented epithelial cell line useful for studying lens differentiation in vitro PANAGIOTIS A. TSONIS* 1, WONHEE JANG

More information

Supplementary Fig. S1. Schematic representation of mouse lines Pax6 fl/fl and mrx-cre used in this study. (A) To generate Pax6 fl/ fl

Supplementary Fig. S1. Schematic representation of mouse lines Pax6 fl/fl and mrx-cre used in this study. (A) To generate Pax6 fl/ fl Supplementary Fig. S1. Schematic representation of mouse lines Pax6 fl/fl and mrx-cre used in this study. (A) To generate Pax6 fl/ fl, loxp sites flanking exons 3-6 (red arrowheads) were introduced into

More information

Lecture 20: Drosophila melanogaster

Lecture 20: Drosophila melanogaster Lecture 20: Drosophila melanogaster Model organisms Polytene chromosome Life cycle P elements and transformation Embryogenesis Read textbook: 732-744; Fig. 20.4; 20.10; 20.15-26 www.mhhe.com/hartwell3

More information

7.22 Example Problems for Exam 1 The exam will be of this format. It will consist of 2-3 sets scenarios.

7.22 Example Problems for Exam 1 The exam will be of this format. It will consist of 2-3 sets scenarios. Massachusetts Institute of Technology Department of Biology 7.22, Fall 2005 - Developmental Biology Instructors: Professor Hazel Sive, Professor Martha Constantine-Paton 1 of 10 7.22 Fall 2005 sample exam

More information

Concepts and Methods in Developmental Biology

Concepts and Methods in Developmental Biology Biology 4361 Developmental Biology Concepts and Methods in Developmental Biology June 16, 2009 Conceptual and Methodological Tools Concepts Genomic equivalence Differential gene expression Differentiation/de-differentiation

More information

2. Outline the levels of DNA packing in the eukaryotic nucleus below next to the diagram provided.

2. Outline the levels of DNA packing in the eukaryotic nucleus below next to the diagram provided. AP Biology Reading Packet 6- Molecular Genetics Part 2 Name Chapter 19: Eukaryotic Genomes 1. Define the following terms: a. Euchromatin b. Heterochromatin c. Nucleosome 2. Outline the levels of DNA packing

More information

Neural Induction. Chapter One

Neural Induction. Chapter One Neural Induction Chapter One Fertilization Development of the Nervous System Cleavage (Blastula, Gastrula) Neuronal Induction- Neuroblast Formation Cell Migration Mesodermal Induction Lateral Inhibition

More information

Readings. Lecture IV. Mechanisms of Neural. Neural Development. September 10, Bio 3411 Lecture IV. Mechanisms of Neural Development

Readings. Lecture IV. Mechanisms of Neural. Neural Development. September 10, Bio 3411 Lecture IV. Mechanisms of Neural Development Readings Lecture IV. Mechanisms of Neural NEUROSCIENCE: References : 5 th ed, pp 477-506 (sorta) 4 th ed, pp 545-575 (sorta) Fainsod, A., Steinbeisser, H., & De Robertis, E. M. (1994). EMBO J, 13(21),

More information

REGULATION OF GENE EXPRESSION

REGULATION OF GENE EXPRESSION REGULATION OF GENE EXPRESSION Each cell of a living organism contains thousands of genes. But all genes do not function at a time. Genes function according to requirements of the cell. Genes control the

More information

Xenopus gastrulation. Dorsal-Ventral Patterning - The Spemann Organizer. Two mesoderm inducing signals

Xenopus gastrulation. Dorsal-Ventral Patterning - The Spemann Organizer. Two mesoderm inducing signals Dorsal- atterning - The Spemann Organizer Two mesoderm inducing signals late-blastula early-gastrula nimal Blood Mesothelium Not Vegetal NC Endoderm Hans Spemann (1869-1941) Hilde Mangold (1898-1924) Dr

More information

Culture and differentiation of embryonic stem cells. Hong-Lin Su Department of Life Sciences, National Chung-Hsing University

Culture and differentiation of embryonic stem cells. Hong-Lin Su Department of Life Sciences, National Chung-Hsing University Culture and differentiation of embryonic stem cells Hong-Lin Su Department of Life Sciences, National Chung-Hsing University Topics-ES cell maintenance Establishment Culture condition, including the serum,

More information

Histological preparation of embryonic and adult zebrafish eyes

Histological preparation of embryonic and adult zebrafish eyes Histological preparation of embryonic and adult zebrafish eyes Richard J. Nuckels 1 and Jeffrey M. Gross 1,2,3 1 Section of Molecular Cell and Developmental Biology 2 Institute of Cell and Molecular Biology

More information

Neural Induction. Steven McLoon Department of Neuroscience University of Minnesota

Neural Induction. Steven McLoon Department of Neuroscience University of Minnesota Neural Induction Steven McLoon Department of Neuroscience University of Minnesota 1 Course News Coffee Hour (with Dr. Nakagawa) Friday, Sept 22 8:30-9:30am Surdyks Café in Northrop Auditorium Stop by for

More information

Fibroblast Growth Factor Hedgehog Interdependence During Retina Regeneration

Fibroblast Growth Factor Hedgehog Interdependence During Retina Regeneration DEVELOPMENTAL DYNAMICS 236:1161 1174, 2007 RESEARCH ARTICLE Fibroblast Growth Factor Hedgehog Interdependence During Retina Regeneration Jason R. Spence, Juan-Carlos Aycinena, and Katia Del Rio-Tsonis*

More information

Developmental Biology BY1101 P. Murphy

Developmental Biology BY1101 P. Murphy Developmental Biology BY1101 P. Murphy Lecture 7 Cellular differentiation and the regulation of gene expression. In this lecture we looked at two main questions: How is gene expression regulated? (revision

More information

The Effects of Scaffold Rigidity on Retinal Pigment Epithelial Cells. Corina White Symposium on Biomaterials Science 24 October 2016

The Effects of Scaffold Rigidity on Retinal Pigment Epithelial Cells. Corina White Symposium on Biomaterials Science 24 October 2016 The Effects of Scaffold Rigidity on Retinal Pigment Epithelial Cells Corina White Symposium on Biomaterials Science 24 October 2016 Background Physiology The retina is the light-responsive tissue layer

More information

Charles Shuler, Ph.D. University of Southern California Los Angeles, California Approved for Public Release; Distribution Unlimited

Charles Shuler, Ph.D. University of Southern California Los Angeles, California Approved for Public Release; Distribution Unlimited AD Award Number: DAMD17-01-1-0100 TITLE: Smad-Mediated Signaling During Prostate Growth and Development PRINCIPAL INVESTIGATOR: Charles Shuler, Ph.D. CONTRACTING ORGANIZATION: University of Southern California

More information

DNA Transcription. Visualizing Transcription. The Transcription Process

DNA Transcription. Visualizing Transcription. The Transcription Process DNA Transcription By: Suzanne Clancy, Ph.D. 2008 Nature Education Citation: Clancy, S. (2008) DNA transcription. Nature Education 1(1) If DNA is a book, then how is it read? Learn more about the DNA transcription

More information

We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo.

We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo. We are walking and standing with parts of our bodies which could have been used for thinking had they developed in another part of the embryo. Hans Spemann, 1943 Reading from Chapter 3 - types of cell

More information

Reading. Lecture III. Nervous System Embryology. Biology. Brain Diseases. September 5, Bio 3411 Lecture III. Nervous System Embryology

Reading. Lecture III. Nervous System Embryology. Biology. Brain Diseases. September 5, Bio 3411 Lecture III. Nervous System Embryology Reading NEUROSCIENCE: 5 th ed, pp. 477-506 NEUROSCIENCE: 4 th ed, pp. 545-575 Bio 3411 Wednesday 2 Summary from Lecture II Biology Understanding the brain is THE major question in biology and science.

More information

Green Fluorescent Protein (GFP) Purification. Hydrophobic Interaction Chromatography

Green Fluorescent Protein (GFP) Purification. Hydrophobic Interaction Chromatography Green Fluorescent Protein (GFP) Purification Hydrophobic Interaction Chromatography What is the GFP gene? GFP is a green fluorescent protein that is normally found in jellyfish. It has been engineered

More information

BIOLOGY. Chapter 16 GenesExpression

BIOLOGY. Chapter 16 GenesExpression BIOLOGY Chapter 16 GenesExpression CAMPBELL BIOLOGY TENTH EDITION Reece Urry Cain Wasserman Minorsky Jackson 18 Gene Expression 2014 Pearson Education, Inc. Figure 16.1 Differential Gene Expression results

More information

Lecture III. Nervous System Embryology

Lecture III. Nervous System Embryology Bio 3411 Wednesday Reading NEUROSCIENCE: 5 th ed, pp. 477-506 NEUROSCIENCE: 4 th ed, pp. 545-575 2 1 Summary from Lecture II Biology Understanding the brain is THE major question in biology and science.

More information

Facts and theories of organ regeneration in adults

Facts and theories of organ regeneration in adults Harvard-MIT Division of Health Sciences and Technology HST.535: Principles and Practice of Tissue Engineering Instructor: I. V. Yannas Facts and theories of organ regeneration in adults I.V.Yannas, PhD

More information

Non-mammalian animal models in developmental toxicology. Dr. Michael Oelgeschläger

Non-mammalian animal models in developmental toxicology. Dr. Michael Oelgeschläger FEDERAL INSTITUTE FOR RISK ASSESSMENT Non-mammalian animal models in developmental toxicology Dr. Michael Oelgeschläger Nick Hobgood, wikipedia Emergence of animal models in experimental developmental

More information

Gene Expression: Transcription

Gene Expression: Transcription Gene Expression: Transcription The majority of genes are expressed as the proteins they encode. The process occurs in two steps: Transcription = DNA RNA Translation = RNA protein Taken together, they make

More information

Exam 1 ID#: June 29, 2009

Exam 1 ID#: June 29, 2009 Biology 4361 Name: KEY Exam 1 ID#: June 29, 2009 Multiple choice (one point each; indicate the best answer) 1. According to von Baer s laws, developing embryos a. pass through the adult stages of lower

More information

Differential Gene Expression

Differential Gene Expression Biology 4361 Developmental Biology Differential Gene Expression September 28, 2006 Chromatin Structure ~140 bp ~60 bp Transcriptional Regulation: 1. Packing prevents access CH 3 2. Acetylation ( C O )

More information

Zool 3200: Cell Biology Exam 2 2/20/15

Zool 3200: Cell Biology Exam 2 2/20/15 Name: TRASK Zool 3200: Cell Biology Exam 2 2/20/15 Answer each of the following short and longer answer questions in the space provided; circle the BEST answer or answers for each multiple choice question

More information

Learning Objectives. Define RNA interference. Define basic terminology. Describe molecular mechanism. Define VSP and relevance

Learning Objectives. Define RNA interference. Define basic terminology. Describe molecular mechanism. Define VSP and relevance Learning Objectives Define RNA interference Define basic terminology Describe molecular mechanism Define VSP and relevance Describe role of RNAi in antigenic variation A Nobel Way to Regulate Gene Expression

More information

Fertilization. Animal hemisphere. Sperm entry point

Fertilization. Animal hemisphere. Sperm entry point Fertilization Animal hemisphere Sperm entry point Establishes the dorsal/ventral axis Ventral side sperm entry Dorsal side gray crescent Organized by sperm centriole Cleavage Unequal radial holoblastic

More information

Chapter 18: Regulation of Gene Expression. 1. Gene Regulation in Bacteria 2. Gene Regulation in Eukaryotes 3. Gene Regulation & Cancer

Chapter 18: Regulation of Gene Expression. 1. Gene Regulation in Bacteria 2. Gene Regulation in Eukaryotes 3. Gene Regulation & Cancer Chapter 18: Regulation of Gene Expression 1. Gene Regulation in Bacteria 2. Gene Regulation in Eukaryotes 3. Gene Regulation & Cancer Gene Regulation Gene regulation refers to all aspects of controlling

More information

Transcription in Prokaryotes. Jörg Bungert, PhD Phone:

Transcription in Prokaryotes. Jörg Bungert, PhD Phone: Transcription in Prokaryotes Jörg Bungert, PhD Phone: 352-273-8098 Email: jbungert@ufl.edu Objectives Understand the basic mechanism of transcription. Know the function of promoter elements and associating

More information

Early Development and Axis Formation in Amphibians

Early Development and Axis Formation in Amphibians Biology 4361 Early Development and Axis Formation in Amphibians October 25, 2006 Overview Cortical rotation Cleavage Gastrulation Determination the Organizer mesoderm induction Setting up the axes: dorsal/ventral

More information

Chapter 25: Regulating Eukaryotic Transcription The Ligand Responsive Activators

Chapter 25: Regulating Eukaryotic Transcription The Ligand Responsive Activators Chapter 25: Regulating Eukaryotic Transcription The Ligand Responsive Activators At least 5 potential gene expression control points Superfamily of Gene Regulators Activation of gene structure Initiation

More information

A Discovery Laboratory Investigating Bacterial Gene Regulation

A Discovery Laboratory Investigating Bacterial Gene Regulation Chapter 8 A Discovery Laboratory Investigating Bacterial Gene Regulation Robert Moss Wofford College 429 N. Church Street Spartanburg, SC 29307 mosssre@wofford.edu Bob Moss is an Associate Professor of

More information

Developmental Zoology (ZOO ) Gatrulation

Developmental Zoology (ZOO ) Gatrulation Developmental Zoology (ZOO 228.1.0) Gatrulation 1 Developmental Stages Ø Early Development Fertilization Cleavage Gastrulation Neurulation Ø Later Development Organogenesis Larval molts Metamorphosis Aging

More information

Genetics Lecture Notes Lectures 17 19

Genetics Lecture Notes Lectures 17 19 Genetics Lecture Notes 7.03 2005 Lectures 17 19 Lecture 17 Gene Regulation We are now going to look at ways that genetics can be used to study gene regulation. The issue is how cells adjust the expression

More information

CHAPTER 13 LECTURE SLIDES

CHAPTER 13 LECTURE SLIDES CHAPTER 13 LECTURE SLIDES Prepared by Brenda Leady University of Toledo To run the animations you must be in Slideshow View. Use the buttons on the animation to play, pause, and turn audio/text on or off.

More information

Fluorescent in-situ Hybridization

Fluorescent in-situ Hybridization Fluorescent in-situ Hybridization Presented for: Presented by: Date: 2 Definition In situ hybridization is the method of localizing/ detecting specific nucleotide sequences in morphologically preserved

More information

What s the most complex problem in biology?

What s the most complex problem in biology? Chapter 47. Development What s the most complex problem in biology? 1 The most complex problem How to get from here to there Development: cellular level Cell division Differentiation cells become specialized

More information

Chapter 47. Development

Chapter 47. Development Chapter 47. Development What s the most complex problem in biology? The most complex problem How to get from here to there Development: cellular level Cell division Differentiation cells become specialized

More information

Biotechnology, Synthetic Biology, and Genetic Circuit Design Module Lesson Plan. 1 day. 1 P age

Biotechnology, Synthetic Biology, and Genetic Circuit Design Module Lesson Plan. 1 day. 1 P age 1 P age Biotechnology, Synthetic Biology, and Genetic Circuit Design Module Lesson Plan 1 day 2 P age Introduction In this single module students will build upon their previous knowledge of basic molecular

More information

7.1 The lac Operon 7-1

7.1 The lac Operon 7-1 7.1 The lac Operon The lac operon was the first operon discovered It contains 3 genes coding for E. coli proteins that permit the bacteria to use the sugar lactose Galactoside permease (lacy) which transports

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION a before amputation regeneration regenerated limb DERMIS SKELETON MUSCLE SCHWANN CELLS EPIDERMIS DERMIS SKELETON MUSCLE SCHWANN CELLS EPIDERMIS developmental origin: lateral plate mesoderm presomitic mesoderm

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/331/6018/753/dc1 Supporting Online Material for Embryological Evidence Identifies Wing Digits in Birds as Digits 1, 2, and 3 Koji Tamura,* Naoki Nomura, Ryohei Seki,

More information

Role of Bmi-1 in Epigenetic Regulation. During Early Neural Crest Development

Role of Bmi-1 in Epigenetic Regulation. During Early Neural Crest Development Role of Bmi-1 in Epigenetic Regulation During Early Neural Crest Development Thesis by Jane I. Khudyakov In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy California Institute

More information

Differential Gene Expression

Differential Gene Expression Biology 4361 Developmental Biology Differential Gene Expression June 19, 2008 Differential Gene Expression Overview Chromatin structure Gene anatomy RNA processing and protein production Initiating transcription:

More information

In vivo and in vitro experimental analysis of lens epithelium differentiative capacity in Xenopus laevis

In vivo and in vitro experimental analysis of lens epithelium differentiative capacity in Xenopus laevis Italian Journal of Zoology ISSN: 1- (Print) 14-1 (Online) Journal homepage: http://www.tandfonline.com/loi/tizo2 In vivo and in vitro experimental analysis of lens epithelium differentiative capacity in

More information

Activity 47.1 What common events occur in the early development of animals? 1. What key events occur at each stage of development?

Activity 47.1 What common events occur in the early development of animals? 1. What key events occur at each stage of development? Notes to Instructors Chapter 47 Animal Development What is the focus of this activity? Chapter 21 provided a review of how genes act to control development. Chapter 47 reviews some of the major morphological

More information

John Gurdon was testing the hypothesis of genomic equivalence or that when cells divide they retain a full genomic compliment.

John Gurdon was testing the hypothesis of genomic equivalence or that when cells divide they retain a full genomic compliment. 1. (15 pts) John Gurdon won the 2012 Nobel Prize in Physiology or Medicine for work he did in the 1960 s. What was the major developmental hypothesis he set out to test? What techniques did he development

More information

What is RNA? Another type of nucleic acid A working copy of DNA Does not matter if it is damaged or destroyed

What is RNA? Another type of nucleic acid A working copy of DNA Does not matter if it is damaged or destroyed RNA Section 3.1 What is RNA? Another type of nucleic acid A working copy of DNA Does not matter if it is damaged or destroyed Used to direct the production of proteins that determines an organisms characteristics

More information

Eukaryotic Transcription

Eukaryotic Transcription Eukaryotic Transcription I. Differences between eukaryotic versus prokaryotic transcription. II. (core vs holoenzyme): RNA polymerase II - Promotor elements. - General Pol II transcription factors (GTF).

More information

Trasposable elements: Uses of P elements Problem set B at the end

Trasposable elements: Uses of P elements Problem set B at the end Trasposable elements: Uses of P elements Problem set B at the end P-elements have revolutionized the way Drosophila geneticists conduct their research. Here, we will discuss just a few of the approaches

More information

Reversibility of the Differentiated State: Regeneration in Amphibians

Reversibility of the Differentiated State: Regeneration in Amphibians Artificial Organs 30(10):743 755, Blackwell Publishing, Inc. 2006, Copyright the Authors Journal compilation 2006, International Center for Artificial Organs and Transplantation Reversibility of the Differentiated

More information

Lab Module 7: Cell Adhesion

Lab Module 7: Cell Adhesion Lab Module 7: Cell Adhesion Tissues are made of cells and materials secreted by cells that occupy the spaces between the individual cells. This material outside of cells is called the Extracellular Matrix

More information

Protocol INTRODUCTION RELATED INFORMATION MATERIALS. Histological Preparation of Embryonic and Adult Zebrafish Eyes

Protocol INTRODUCTION RELATED INFORMATION MATERIALS. Histological Preparation of Embryonic and Adult Zebrafish Eyes Please cite as: CSH Protocols; 2007; doi:10.1101/pdb.prot4846 Protocol Histological Preparation of Embryonic and Adult Zebrafish Eyes Richard J. Nuckels 1 and Jeffrey M. Gross 1,2,3,4 1 Section of Molecular

More information

Epigenetics, Environment and Human Health

Epigenetics, Environment and Human Health Epigenetics, Environment and Human Health A. Karim Ahmed National Council for Science and the Environment Washington, DC May, 2015 Epigenetics A New Biological Paradigm A Question about Cells: All cells

More information

The Effect of Chloroacetophenone on the Inducing Capacity of Hensen's Node

The Effect of Chloroacetophenone on the Inducing Capacity of Hensen's Node The Effect of Chloroacetophenone on the Inducing Capacity of Hensen's Node by M. S. LAKSHMI 1 From the Department of Zoology, University ofpoona RODUCTION IN a previous paper (Lakshmi, 1962) the effects

More information

Read the question carefully before answering. Think before you write. If I can not read your handwriting, I will count the question wrong.

Read the question carefully before answering. Think before you write. If I can not read your handwriting, I will count the question wrong. Name KEY Note Total points added up to only 98 points so everyone received 2 free points to make total points 100. Biology 201 (Genetics) Exam #3 23 November 2004 Read the question carefully before answering.

More information

sides of the aleurone (Al) but it is excluded from the basal endosperm transfer layer

sides of the aleurone (Al) but it is excluded from the basal endosperm transfer layer Supplemental Data. Gómez et al. (2009). The maize transcription factor MRP-1 (Myb-Related-Protein-1) is a key regulator of the differentiation of transfer cells. Supplemental Figure 1. Expression analyses

More information

Name Class Date. Practice Test

Name Class Date. Practice Test Name Class Date 12 DNA Practice Test Multiple Choice Write the letter that best answers the question or completes the statement on the line provided. 1. What do bacteriophages infect? a. mice. c. viruses.

More information

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity

The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity Promega Notes Magazine Number 62, 1997, p. 02 The GeneEditor TM in vitro Mutagenesis System: Site- Directed Mutagenesis Using Altered Beta-Lactamase Specificity By Christine Andrews and Scott Lesley Promega

More information

Intravitreal and sub-retinal injections of plasmid DNA and electroporation in P0 pups

Intravitreal and sub-retinal injections of plasmid DNA and electroporation in P0 pups Intravitreal and sub-retinal injections of plasmid DNA and electroporation in P0 pups Protocol modified from: Retinal Gene Delivery by raav and DNA Electroporation, Aditya Venkatesh et all, Current Protocols

More information

Advances in understanding tissue regenerative capacity and mechanisms in animals

Advances in understanding tissue regenerative capacity and mechanisms in animals Advances in understanding tissue regenerative capacity and mechanisms in animals Kenneth D. Poss Abstract Questions about how and why tissue regeneration occurs have captured the attention of countless

More information

Lecture 9 Controlling gene expression

Lecture 9 Controlling gene expression Lecture 9 Controlling gene expression BIOLOGY Campbell, Reece and Mitchell Chapter 18 334- (352-356) Every cell in your body contains the same number of genes approximately 35, 000 DNA is wound around

More information

Chapter 12 Packet DNA 1. What did Griffith conclude from his experiment? 2. Describe the process of transformation.

Chapter 12 Packet DNA 1. What did Griffith conclude from his experiment? 2. Describe the process of transformation. Chapter 12 Packet DNA and RNA Name Period California State Standards covered by this chapter: Cell Biology 1. The fundamental life processes of plants and animals depend on a variety of chemical reactions

More information

DNA Replication in Eukaryotes

DNA Replication in Eukaryotes OpenStax-CNX module: m44517 1 DNA Replication in Eukaryotes OpenStax College This work is produced by OpenStax-CNX and licensed under the Creative Commons Attribution License 3.0 By the end of this section,

More information

Chapter 15 Gene Technologies and Human Applications

Chapter 15 Gene Technologies and Human Applications Chapter Outline Chapter 15 Gene Technologies and Human Applications Section 1: The Human Genome KEY IDEAS > Why is the Human Genome Project so important? > How do genomics and gene technologies affect

More information

Enhancers mutations that make the original mutant phenotype more extreme. Suppressors mutations that make the original mutant phenotype less extreme

Enhancers mutations that make the original mutant phenotype more extreme. Suppressors mutations that make the original mutant phenotype less extreme Interactomics and Proteomics 1. Interactomics The field of interactomics is concerned with interactions between genes or proteins. They can be genetic interactions, in which two genes are involved in the

More information

Methods of Biomaterials Testing Lesson 3-5. Biochemical Methods - Molecular Biology -

Methods of Biomaterials Testing Lesson 3-5. Biochemical Methods - Molecular Biology - Methods of Biomaterials Testing Lesson 3-5 Biochemical Methods - Molecular Biology - Chromosomes in the Cell Nucleus DNA in the Chromosome Deoxyribonucleic Acid (DNA) DNA has double-helix structure The

More information

Solution Key Problem Set

Solution Key Problem Set Solution Key- 7.013 Problem Set 5-2013 Question 1 During a summer hike you suddenly spot a huge grizzly bear. This emergency situation triggers a fight or flight response through a signaling pathway as

More information

Supplementary Materials and Methods:

Supplementary Materials and Methods: Supplementary Materials and Methods: Preclinical chemoprevention experimental design Mice were weighed and each mammary tumor was manually palpated and measured with digital calipers once a week from 4

More information

Artificial Nucleic Acids -Their Developments and Recent Applications

Artificial Nucleic Acids -Their Developments and Recent Applications Artificial Nucleic Acids -Their Developments and Recent Applications Bioorganic Chemistry Laboratory D2 Kenichiro Ito Organic Seminar 2012/5/7 1 Nucleic acids play central roles in life Replication Transcription

More information

Genetic Labeling Techniques

Genetic Labeling Techniques Genetic Labeling Techniques CRRT 2012 San Diego, California February 14, 2012 Benjamin D. Humphreys, M.D., Ph.D. Principal Faculty and Co-Director, Harvard Stem Cell Institute Kidney Program Assistant

More information

DNA Transcription. Dr Aliwaini

DNA Transcription. Dr Aliwaini DNA Transcription 1 DNA Transcription-Introduction The synthesis of an RNA molecule from DNA is called Transcription. All eukaryotic cells have five major classes of RNA: ribosomal RNA (rrna), messenger

More information

Developmental Biology 3230 Exam 1 (Feb. 6) NAME

Developmental Biology 3230 Exam 1 (Feb. 6) NAME DevelopmentalBiology3230Exam1(Feb.6)NAME 1. (10pts) What is a Fate Map? How would you experimentally acquire the data to draw a Fate Map? Explain what a Fate Map does and does not tell you about the mechanisms

More information

GENE REGULATION slide shows by Kim Foglia modified Slides with blue edges are Kim s

GENE REGULATION slide shows by Kim Foglia modified Slides with blue edges are Kim s GENE REGULATION slide shows by Kim Foglia modified Slides with blue edges are Kim s 2007-2008 Bacterial metabolism Bacteria need to respond quickly to changes in their environment STOP GO if they have

More information

BIOTECHNOLOGY. Unit 8

BIOTECHNOLOGY. Unit 8 BIOTECHNOLOGY Unit 8 PART 1 BASIC/FUNDAMENTAL SCIENCE VS. APPLIED SCIENCE! Basic/Fundamental Science the development and establishment of information to aid our understanding of the world.! Applied Science

More information

Differential Gene Expression

Differential Gene Expression Biology 4361 - Developmental Biology Differential Gene Expression June 18, 2009 Differential Gene Expression Overview Chromatin structure Gene anatomy RNA processing and protein production Initiating transcription:

More information

Highly efficient genome engineering in flowering plants ~ Development of a rapid method to knockout genes in Arabidopsis thaliana ~

Highly efficient genome engineering in flowering plants ~ Development of a rapid method to knockout genes in Arabidopsis thaliana ~ Highly efficient genome engineering in flowering plants ~ Development of a rapid method to knockout genes in Arabidopsis thaliana ~ December 5, 2016 Plant biologists at ITbM, Nagoya University have developed

More information

Biotech Applications Nucleic acid therapeutics, Antibiotics, Transgenics. BIT 220 End of Chapter 22 (Snustad/Simmons)

Biotech Applications Nucleic acid therapeutics, Antibiotics, Transgenics. BIT 220 End of Chapter 22 (Snustad/Simmons) Biotech Applications Nucleic acid therapeutics, Antibiotics, Transgenics BIT 220 End of Chapter 22 (Snustad/Simmons) Nucleic Acids as Therapeutic Agents Many diseases (cancer, inflammatory diseases) from

More information

(pp , these PROCEEDINGS) suggested to him to test the effects of the antiserum DESTRUCTION OF THE SYMPATHETIC GANGLIA IN MAMMALS BY

(pp , these PROCEEDINGS) suggested to him to test the effects of the antiserum DESTRUCTION OF THE SYMPATHETIC GANGLIA IN MAMMALS BY 384 ZOOLOGY: LEVI-MONTALC'INI AND BOOKER PROC. N. A. S. * This work has been supported by a grant from the National Science Foundation and by a contribution from an Institutional grant of the American

More information

ANIMAL MODELS OF DIAPHRAGMATIC HERNIA TERATOGENIC DIETARY (VITAMIN A DEFICIENT) GENETIC CONGENITAL DIAPHRAGMATIC HERNIA

ANIMAL MODELS OF DIAPHRAGMATIC HERNIA TERATOGENIC DIETARY (VITAMIN A DEFICIENT) GENETIC CONGENITAL DIAPHRAGMATIC HERNIA CONGENITAL DIAPHRAGMATIC HERNIA JOHN J. GREER UNIVERSITY OF ALBERTA ANIMAL MODELS OF DIAPHRAGMATIC HERNIA MAIN TOPICS 1. ORIGIN OF DIAPHRAGM DEFECT 2. RETINOID SIGNALLING AND GENES LINKED TO CDH TERATOGENIC

More information

Xeno-Free Systems for hesc & hipsc. Facilitating the shift from Stem Cell Research to Clinical Applications

Xeno-Free Systems for hesc & hipsc. Facilitating the shift from Stem Cell Research to Clinical Applications Xeno-Free Systems for hesc & hipsc Facilitating the shift from Stem Cell Research to Clinical Applications NutriStem Defined, xeno-free (XF), serum-free media (SFM) specially formulated for growth and

More information

Enhancer genetics Problem set E

Enhancer genetics Problem set E Enhancer genetics Problem set E How are specific cell types generated during development? There are thought to be 10,000 different types of neurons in the human nervous system. How are all of these neural

More information

IN THE UNITED STATES PATENT AND TRADEMARK OFFICE

IN THE UNITED STATES PATENT AND TRADEMARK OFFICE IN THE UNITED STATES PATENT AND TRADEMARK OFFICE In the matter of: Reexamination Control. No. 95/000,154 Art Unit: 3991 U.S. Patent No. 7,029,913 Issued: April 18, 2006 Examiner: Gary L. Kunz Inventor:

More information

Supplemental Information Inventory

Supplemental Information Inventory Cell Stem Cell, Volume 6 Supplemental Information Distinct Hematopoietic Stem Cell Subtypes Are Differentially Regulated by TGF-β1 Grant A. Challen, Nathan C. Boles, Stuart M. Chambers, and Margaret A.

More information

GM130 Is Required for Compartmental Organization of Dendritic Golgi Outposts

GM130 Is Required for Compartmental Organization of Dendritic Golgi Outposts Current Biology, Volume 24 Supplemental Information GM130 Is Required for Compartmental Organization of Dendritic Golgi Outposts Wei Zhou, Jin Chang, Xin Wang, Masha G. Savelieff, Yinyin Zhao, Shanshan

More information

Lecture 5: Multicellular Organization and Hydra Regeneration

Lecture 5: Multicellular Organization and Hydra Regeneration Lecture 5: Multicellular Organization and Hydra Regeneration Jordi Soriano Fradera Dept. Física de la Matèria Condensada, Universitat de Barcelona UB Institute of Complex Systems September 2016 1. Framework:

More information

Guided differentiation of ES cell into mesenchymal stem cell

Guided differentiation of ES cell into mesenchymal stem cell Guided differentiation of ES cell into mesenchymal stem cell Takumi Era Division of Molecular Neurobiology Institute of Molecular Embryology and Genetics, Kumamoto University Differentiation pathways of

More information

Gene Regulation & Mutation 8.6,8.7

Gene Regulation & Mutation 8.6,8.7 Gene Regulation & Mutation 8.6,8.7 Eukaryotic Gene Regulation Transcription factors: ensure proteins are made at right time and in right amounts. One type forms complexes that guide & stabilize binding

More information

Summary of Mutagenic Toxicity Test Results for EvaGreen

Summary of Mutagenic Toxicity Test Results for EvaGreen Summary of Mutagenic Toxicity Test Results for EvaGreen Compiled by Biotium, Inc. from the results of an independent testing service: Litron Laboratories, Inc., Rochester, NY Overview When our scientists

More information

GENE REGULATION IN PROKARYOTES

GENE REGULATION IN PROKARYOTES GENE REGULATION IN PROKARYOTES Prepared by Brenda Leady, University of Toledo Copyright (c) The McGraw-Hill Companies, Inc. Permission required for reproduction or display. 1 Gene regulation refers to

More information

Gene Expression Technology

Gene Expression Technology Gene Expression Technology Bing Zhang Department of Biomedical Informatics Vanderbilt University bing.zhang@vanderbilt.edu Gene expression Gene expression is the process by which information from a gene

More information

NPTEL Biotechnology Tissue Engineering. Stem cells

NPTEL Biotechnology Tissue Engineering. Stem cells Stem cells S. Swaminathan Director Centre for Nanotechnology & Advanced Biomaterials School of Chemical & Biotechnology SASTRA University Thanjavur 613 401 Tamil Nadu Joint Initiative of IITs and IISc

More information